From 6413bdbcf3456261d48ada7b563c6abed72545c4 Mon Sep 17 00:00:00 2001
From: Igor Sfiligoi <isfiligoi@ucsd.edu>
Date: Mon, 13 Jan 2025 09:37:51 -0800
Subject: [PATCH] Remove mkl-include dependency, use blas-devel instead

---
 .github/workflows/main.yml | 4 ++--
 README.md                  | 2 +-
 src/skbio_alt.cpp          | 5 ++---
 3 files changed, 5 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 2ff744c..21f88af 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -28,9 +28,9 @@ jobs:
         df -h .
         if [[ "$(uname -s)" == "Linux" ]];
         then
-          conda create -q --yes --strict-channel-priority -n unifrac -c conda-forge -c bioconda gxx_linux-64 gfortran_linux-64 hdf5 mkl-include lz4 zlib hdf5-static libcblas liblapacke make curl
+          conda create -q --yes --strict-channel-priority -n unifrac -c conda-forge -c bioconda gxx_linux-64 gfortran_linux-64 hdf5 lz4 zlib hdf5-static libcblas liblapacke blas-devel make curl
         else
-          conda create -q --yes --strict-channel-priority -n unifrac -c conda-forge -c bioconda clangxx_osx-64 hdf5 mkl-include lz4 hdf5-static libcblas liblapacke make curl
+          conda create -q --yes --strict-channel-priority -n unifrac -c conda-forge -c bioconda clangxx_osx-64 hdf5 lz4 hdf5-static libcblas liblapacke blas-devel make curl
         fi 
         conda clean --yes -t
         df -h .
diff --git a/README.md b/README.md
index a879a7a..a7f0002 100644
--- a/README.md
+++ b/README.md
@@ -68,7 +68,7 @@ make install
 `conda-forge` channel, for example (on Linux):
 
 ```
-conda create --strict-channel-priority -n unifrac-binaries -c conda-forge -c bioconda gxx_linux-64 gfortran_linux-64 hdf5 mkl-include lz4 zlib hdf5-static libcblas liblapacke make curl
+conda create --strict-channel-priority -n unifrac-binaries -c conda-forge -c bioconda gxx_linux-64 gfortran_linux-64 hdf5 lz4 zlib hdf5-static libcblas liblapacke blas-devel make curl
 conda activate unifrac-binaries
 ```
 
diff --git a/src/skbio_alt.cpp b/src/skbio_alt.cpp
index 1db2713..474ecfc 100644
--- a/src/skbio_alt.cpp
+++ b/src/skbio_alt.cpp
@@ -9,9 +9,8 @@
 #include <random>
 #include <algorithm>
 
-// Not using anything mkl specific, but this is what we get from Conda
-#include <mkl_cblas.h>
-#include <mkl_lapacke.h>
+#include <cblas.h>
+#include <lapacke.h>
 
 static std::mt19937 myRandomGenerator;