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Subset table with a multicolumn id File #587

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jwdebelius opened this issue Jan 26, 2015 · 0 comments
Closed

Subset table with a multicolumn id File #587

jwdebelius opened this issue Jan 26, 2015 · 0 comments

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@jwdebelius
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Qiime scripts for filtering (i.e. filter_distance_matrix.py) allows the user to pass a tab-delimited mapping file with multiple columns. biom subset-table requires the file be a single column, and throws a read error if a tab-delimited file is passed.

Would it be possible to pass a multi-column file and harvest the sample ids in biom as well as Qiime?
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