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RNA alignment #105

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akmorrow13 opened this issue Feb 9, 2018 · 2 comments
Closed

RNA alignment #105

akmorrow13 opened this issue Feb 9, 2018 · 2 comments
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0.5.0

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@akmorrow13
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We should add some algorithm for RNA alignment
@heuermh
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heuermh commented Feb 14, 2018

What were you thinking? Any external tool(s) will need to be smart about handling stdin and stdout.

@heuermh heuermh added this to the 0.5.0 milestone May 23, 2019
@heuermh
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heuermh commented May 23, 2019

Closing as WontFix. Neither STAR nor HISAT2 will work with Cannoli, as neither can handle interleaved FASTQ or unaligned BAM on standard input.

@heuermh heuermh closed this as completed May 23, 2019
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@heuermh @akmorrow13