fenr 0.99.0

• Preparing for Bioconductor submission

fenr 0.1.17

• New units tests added

fenr 0.1.16

Version 0.1.16

• Added a fix to work correctly with integer feature IDs.

fenr 0.1.15

• Fixed a bug where there are some features at a term that are not present in the universe (all features). This could happen when the universe was particularly small. Potentially a serious bug.

fenr 0.1.14

• Added functions get_term_features and get_feature_terms to access data safely
• HACK: BioPlanet server's SSL certificate expired, so switched to insecure download
• Ditched large and clunky Rfast and using native R environments as fast hashes
• A few tweaks and improvements

fenr 0.1.11

• Significant speed-up of enrichment by using Rfast::Hash in place of R lists
• KEGG improvements, recognising flat file genes with no gene synonym
• Additional tests for Reactome
• Minor improvements and fixes

fenr 0.1.10

• Style changes for BiocCheck
• Adding more tests
• Fixing a bug in parse_kegg_genes

fenr 0.1.9

• Replacing ontologyIndex::get_ontology with a simpler parser
• Replacing KEGGREST with own simple API parsers
• Applying BiocStyle to the vignette
• improving test_functional_enrichment

fenr 0.1.8

• fetch_reactome provides two ways of retrieving data, via one downloadable file or via APIs.

fenr 0.1.7

• small fixes
• link to a separate GitHub Shiny app added
• added support for WikiPathways
• improved robustness
• more tests