diff --git a/NAMESPACE b/NAMESPACE index 590c4b2f..44baa2a4 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -1,29 +1,40 @@ # Generated by roxygen2: do not edit by hand -export(label_log) -export(length_log) -export(type_log) -export(var_names_log) -export(var_ord_msg) +export(xportr) export(xportr_df_label) export(xportr_format) export(xportr_label) export(xportr_length) -export(xportr_logger) export(xportr_metadata) +export(xportr_options) export(xportr_order) export(xportr_type) export(xportr_write) export(xpt_validate) import(haven) import(rlang) +importFrom(checkmate,assert) +importFrom(checkmate,assert_character) +importFrom(checkmate,assert_choice) +importFrom(checkmate,assert_data_frame) +importFrom(checkmate,assert_integer) +importFrom(checkmate,assert_logical) +importFrom(checkmate,assert_string) +importFrom(checkmate,check_data_frame) +importFrom(checkmate,check_r6) +importFrom(checkmate,makeAssertion) +importFrom(checkmate,test_data_frame) +importFrom(checkmate,test_string) +importFrom(checkmate,vname) importFrom(cli,cli_alert_danger) importFrom(cli,cli_alert_info) importFrom(cli,cli_alert_success) importFrom(cli,cli_div) importFrom(cli,cli_h2) importFrom(cli,cli_text) +importFrom(dplyr,across) importFrom(dplyr,arrange) +importFrom(dplyr,as_tibble) importFrom(dplyr,bind_cols) importFrom(dplyr,case_when) importFrom(dplyr,distinct) @@ -46,6 +57,7 @@ importFrom(graphics,stem) importFrom(lifecycle,deprecated) importFrom(magrittr,"%>%") importFrom(magrittr,extract2) +importFrom(purrr,iwalk) importFrom(purrr,map) importFrom(purrr,map2_chr) importFrom(purrr,map_chr) @@ -60,6 +72,7 @@ importFrom(stringr,str_replace) importFrom(stringr,str_replace_all) importFrom(tidyselect,all_of) importFrom(tidyselect,any_of) +importFrom(tidyselect,where) importFrom(utils,capture.output) importFrom(utils,packageVersion) importFrom(utils,str) diff --git a/man/metadata.Rd b/man/metadata.Rd index 9df1c6c8..30918a0c 100644 --- a/man/metadata.Rd +++ b/man/metadata.Rd @@ -12,7 +12,7 @@ xportr_metadata(.df, metadata = NULL, domain = NULL, verbose = NULL) \item{metadata}{A data frame containing variable level metadata. See 'Metadata' section for details.} -\item{domain}{Appropriate CDISC dataset name, e.g. ADAE, DM. Used to subset +\item{domain}{Appropriate CDSIC dataset name, e.g. ADAE, DM. Used to subset the metadata object. If none is passed, then name of the dataset passed as .df will be used.} diff --git a/man/xportr-package.Rd b/man/xportr-package.Rd index 2f38a255..bcd0521d 100644 --- a/man/xportr-package.Rd +++ b/man/xportr-package.Rd @@ -85,7 +85,8 @@ coerce R classes to numeric XPT types. Default: c("integer", "numeric", "num", " } \item{ xportr.numeric_types - The default character vector used to explicitly -coerce R classes to numeric XPT types. Default: c("integer", "float", "numeric", "posixct", "posixt", "time", "date") +coerce R classes to numeric XPT types. Default: c("integer", "float", +"numeric", "posixct", "posixt", "time", "date") } } } diff --git a/man/xportr_df_label.Rd b/man/xportr_df_label.Rd index 5f95d771..691de990 100644 --- a/man/xportr_df_label.Rd +++ b/man/xportr_df_label.Rd @@ -12,7 +12,7 @@ xportr_df_label(.df, metadata = NULL, domain = NULL, metacore = deprecated()) \item{metadata}{A data frame containing dataset. See 'Metadata' section for details.} -\item{domain}{Appropriate CDISC dataset name, e.g. ADAE, DM. Used to subset +\item{domain}{Appropriate CDSIC dataset name, e.g. ADAE, DM. Used to subset the metadata object. If none is passed, then name of the dataset passed as .df will be used.} diff --git a/man/xportr_format.Rd b/man/xportr_format.Rd index 0c00da1b..e085a345 100644 --- a/man/xportr_format.Rd +++ b/man/xportr_format.Rd @@ -12,7 +12,7 @@ xportr_format(.df, metadata = NULL, domain = NULL, metacore = deprecated()) \item{metadata}{A data frame containing variable level metadata. See 'Metadata' section for details.} -\item{domain}{Appropriate CDISC dataset name, e.g. ADAE, DM. Used to subset +\item{domain}{Appropriate CDSIC dataset name, e.g. ADAE, DM. Used to subset the metadata object. If none is passed, then name of the dataset passed as .df will be used.} diff --git a/man/xportr_label.Rd b/man/xportr_label.Rd index a61e0583..eb03df81 100644 --- a/man/xportr_label.Rd +++ b/man/xportr_label.Rd @@ -18,7 +18,7 @@ xportr_label( \item{metadata}{A data frame containing variable level metadata. See 'Metadata' section for details.} -\item{domain}{Appropriate CDISC dataset name, e.g. ADAE, DM. Used to subset +\item{domain}{Appropriate CDSIC dataset name, e.g. ADAE, DM. Used to subset the metadata object. If none is passed, then name of the dataset passed as .df will be used.} diff --git a/man/xportr_length.Rd b/man/xportr_length.Rd index 93425808..8d034eb8 100644 --- a/man/xportr_length.Rd +++ b/man/xportr_length.Rd @@ -19,7 +19,7 @@ xportr_length( \item{metadata}{A data frame containing variable level metadata. See 'Metadata' section for details.} -\item{domain}{Appropriate CDISC dataset name, e.g. ADAE, DM. Used to subset +\item{domain}{Appropriate CDSIC dataset name, e.g. ADAE, DM. Used to subset the metadata object. If none is passed, then name of the dataset passed as .df will be used.} diff --git a/man/xportr_order.Rd b/man/xportr_order.Rd index 03617d4f..26b87f42 100644 --- a/man/xportr_order.Rd +++ b/man/xportr_order.Rd @@ -18,7 +18,7 @@ xportr_order( \item{metadata}{A data frame containing variable level metadata. See 'Metadata' section for details.} -\item{domain}{Appropriate CDISC dataset name, e.g. ADAE, DM. Used to subset +\item{domain}{Appropriate CDSIC dataset name, e.g. ADAE, DM. Used to subset the metadata object. If none is passed, then name of the dataset passed as .df will be used.} diff --git a/man/xportr_type.Rd b/man/xportr_type.Rd index 05489fcf..736fe0c6 100644 --- a/man/xportr_type.Rd +++ b/man/xportr_type.Rd @@ -18,7 +18,7 @@ xportr_type( \item{metadata}{A data frame containing variable level metadata. See 'Metadata' section for details.} -\item{domain}{Appropriate CDISC dataset name, e.g. ADAE, DM. Used to subset +\item{domain}{Appropriate CDSIC dataset name, e.g. ADAE, DM. Used to subset the metadata object. If none is passed, then name of the dataset passed as .df will be used.} diff --git a/man/xportr_write.Rd b/man/xportr_write.Rd index bde66844..c6bd4a1d 100644 --- a/man/xportr_write.Rd +++ b/man/xportr_write.Rd @@ -22,7 +22,7 @@ used as \code{xpt} name.} \item{metadata}{A data frame containing dataset. See 'Metadata' section for details.} -\item{domain}{Appropriate CDISC dataset name, e.g. ADAE, DM. Used to subset +\item{domain}{Appropriate CDSIC dataset name, e.g. ADAE, DM. Used to subset the metadata object. If none is passed, then name of the dataset passed as .df will be used.}