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publications.html
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<!doctype html>
<html lang="en">
<head>
<!-- Required meta tags -->
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="description" content="Portfolio of Arun Kumar Boddapati, a versatile full-stack bioinformatics scientist with expertise in NGS data analysis, pipeline development, and machine learning.">
<meta name="keywords" content="Arun Kumar Boddapati, bioinformatics, NGS, data analysis, machine learning, portfolio">
<title>Arun Kumar Boddapati | Portfolio</title>
<link rel="icon" href="images/bar-chart-line.svg" type="image/svg+xml">
<!-- Bootstrap CSS -->
<link href="https://cdn.jsdelivr.net/npm/bootstrap@5.3.3/dist/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-QWTKZyjpPEjISv5WaRU9OFeRpok6YctnYmDr5pNlyT2bRjXh0JMhjY6hW+ALEwIH" crossorigin="anonymous">
<!-- Bootstrap Icons CSS -->
<link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/bootstrap-icons@1.10.5/font/bootstrap-icons.css">
<!-- FontAwesome CSS -->
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.0/css/all.min.css">
<!-- Google Fonts -->
<link href="https://fonts.googleapis.com/css2?family=Roboto:wght@400;700&display=swap" rel="stylesheet">
<!-- Custom CSS -->
<link rel="stylesheet" href="styles.css">
<!-- Bootstrap Bundle with Popper -->
<script src="https://cdn.jsdelivr.net/npm/bootstrap@5.3.3/dist/js/bootstrap.bundle.min.js" integrity="sha384-YvpcrYf0tY3lHB60NNkmXc5s9fDVZLESaAA55NDzOxhy9GkcIdslK1eN7N6jIeHz" crossorigin="anonymous"></script>
<!-- Custom JavaScript -->
<script src="scripts.js"></script>
</head>
<!--Nav-bar-->
<nav class="navbar navbar-expand-lg navbar-dark bg-dark fixed-top">
<div class="container-fluid">
<a class="navbar-brand" href="index.html">
<span class="brand-name">𝗔B.</span>
<span class="dna-emoji">🧬</span>
</a>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarNav"
aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>
<div class="collapse navbar-collapse" id="navbarNav">
<ul class="navbar-nav ms-auto">
<li class="nav-item">
<a class="nav-link" href="index.html">About</a>
</li>
<li class="nav-item">
<a class="nav-link" href="education.html">Education</a>
</li>
<li class="nav-item">
<a class="nav-link" href="experience.html">Experience</a>
</li>
<li class="nav-item">
<a class="nav-link" href="skills.html">Skills</a>
</li>
<li class="nav-item">
<a class="nav-link" href="strengths.html">Strengths</a>
</li>
<li class="nav-item">
<a class="nav-link" href="publications.html">Publications</a>
</li>
<li class="nav-item">
<a class="nav-link" href="contact.html">Contact</a>
</li>
</ul>
</div>
</div>
</nav>
<!-- Publications Section -->
<section id="publications" class="publications mt-5">
<h1>Publications</h1>
<div class="container publication-container">
<div class="row">
<div class="col-md-6 mb-4">
<a href="https://doi.org/10.1016/j.cell.2020.11.007" target="_blank" class="card-link">
<div class="card publication-card">
<img src="images/Baricitinib_fig4.jpg" alt="Baricitinib treatment" class="card-img-top">
<div class="card-body">
<h5 class="card-title">Baricitinib treatment resolves lower-airway macrophage inflammation and neutrophil recruitment in SARS-CoV-2-infected rhesus macaques</h5>
<p class="card-text">SARS-CoV-2 infection models show that Baricitinib treatment reduces inflammation and neutrophil recruitment in the lungs. The study supports its potential as a frontline treatment for COVID-19-related inflammation.</p>
</div>
</div>
</a>
</div>
<div class="col-md-6 mb-4">
<a href="https://doi.org/10.1016/j.immuni.2021.02.001" target="_blank" class="card-link">
<div class="card publication-card">
<img src="images/MVA_S_vaccine.jpg" alt="MVA/S Vaccine" class="card-img-top">
<div class="card-body">
<h5 class="card-title">A modified vaccinia Ankara vector-based vaccine protects macaques from SARS-CoV-2 infection, immune pathology, and dysfunction in the lungs</h5>
<p class="card-text">This study demonstrates that an MVA-based COVID-19 vaccine induces strong immune responses and provides protection against SARS-CoV-2 infection and related lung pathology in macaques.</p>
</div>
</div>
</a>
</div>
<div class="col-md-6 mb-4">
<a href="https://www.science.org/doi/10.1126/sciadv.abg8384" target="_blank" class="card-link">
<div class="card publication-card">
<img src="images/AtypicalB_cells.jpeg" alt="Shared Transcriptional Profiles" class="card-img-top">
<div class="card-body">
<h5 class="card-title">Shared transcriptional profiles of atypical B cells suggest common drivers of expansion and function in malaria, HIV, and autoimmunity</h5>
<p class="card-text">Identifies common transcriptional profiles in atypical B cells across malaria, HIV, and autoimmune diseases, revealing shared mechanisms driving their expansion and function.</p>
</div>
</div>
</a>
</div>
<div class="col-md-6 mb-4">
<a href="https://academic.oup.com/jid/article/224/9/1599/6179305" target="_blank" class="card-link">
<div class="card publication-card">
<img src="images/TIGIT_CD8.jpg" alt="TIGIT_CD8" class="card-img-top">
<div class="card-body">
<h5 class="card-title">Correlation Between TIGIT Expression on CD8+ T Cells and Higher Cytotoxic Capacity</h5>
<p class="card-text">Explores how TIGIT expression on CD8+ T cells correlates with cytotoxic capacity in HIV-infected and healthy individuals, suggesting TIGIT+ cells maintain intrinsic cytotoxicity despite exhaustion markers.</p>
</div>
</div>
</a>
</div>
<div class="col-md-6 mb-4">
<a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336021/" target="_blank" class="card-link">
<div class="card publication-card">
<img src="images/tautyping.jpeg" alt="Tau-typing" class="card-img-top">
<div class="card-body">
<h5 class="card-title">Tau-typing: a Nextflow pipeline for finding the best phylogenetic markers in the genome for molecular typing of microbial species</h5>
<p class="card-text">Introduces Tau-typing, a Nextflow pipeline for identifying genomic markers with high phylogenetic resolution, particularly useful for organisms with limited culture-based methods.</p>
</div>
</div>
</a>
</div>
</div>
</div>
</section>
</html>