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NIfTI images from t1-linear are saved as float64 #622

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SimonaBottani opened this issue Mar 17, 2022 · 14 comments
Open

NIfTI images from t1-linear are saved as float64 #622

SimonaBottani opened this issue Mar 17, 2022 · 14 comments
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@SimonaBottani
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Outputs of the pipeline t1-linear are saved as float64, which is heavier than saving them using uint8
(as done by SPM pipeline t1-volume)

Information is available in the header of the DICOM in the field datatype

@SimonaBottani SimonaBottani added the bug Something isn't working label Mar 17, 2022
@SimonaBottani SimonaBottani changed the title NIfTI images in Output of t1-linear are saved as float64 NIfTI images from t1-linear are saved as float64 Mar 17, 2022
@ghisvail
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Which raises the following question: in which precision do we want our NifTi stored in the end? Aka, the file size vs dynamic range dilemma.

@ghisvail
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Back in my PhD days, we were using short integers (int16 / uint16). I don't know the rationales for this choice at the time.

@ghisvail
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As discussed with @nburgos, short integers should be enough for storing MRI and PET modalities with a reasonable dynamic range.

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This issue is considered stale because it has not received further activity for the last 14 days. You may remove the inactive label or add a comment, otherwise it will be closed after the next 14 days.

@github-actions github-actions bot added the inactive Issue or request has gone stale label Jun 17, 2022
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This issue is considered stale because it has not received further activity for the last 14 days. You may remove the inactive label or add a comment, otherwise it will be closed after the next 14 days.

@github-actions github-actions bot added the inactive Issue or request has gone stale label Sep 26, 2022
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This issue is considered stale because it has not received further activity for the last 14 days. You may remove the inactive label or add a comment, otherwise it will be closed after the next 14 days.

@github-actions github-actions bot added the inactive Issue or request has gone stale label Dec 27, 2022
@github-actions github-actions bot closed this as not planned Won't fix, can't repro, duplicate, stale Jan 10, 2023
@NicolasGensollen NicolasGensollen removed the inactive Issue or request has gone stale label Jan 10, 2023
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This issue is considered stale because it has not received further activity for the last 14 days. You may remove the inactive label or add a comment, otherwise it will be closed after the next 14 days.

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