diff --git a/airflow/models/dag.py b/airflow/models/dag.py
index e3bde16bcb5d51..8177025c2d8ed7 100644
--- a/airflow/models/dag.py
+++ b/airflow/models/dag.py
@@ -974,6 +974,7 @@ def get_task_instances(
             state=state or (),
             include_dependent_dags=False,
             exclude_task_ids=(),
+            exclude_run_ids=None,
             session=session,
         )
         return session.scalars(cast(Select, query).order_by(DagRun.logical_date)).all()
@@ -989,6 +990,7 @@ def _get_task_instances(
         state: TaskInstanceState | Sequence[TaskInstanceState],
         include_dependent_dags: bool,
         exclude_task_ids: Collection[str | tuple[str, int]] | None,
+        exclude_run_ids: frozenset[str] | None,
         session: Session,
         dag_bag: DagBag | None = ...,
     ) -> Iterable[TaskInstance]: ...  # pragma: no cover
@@ -1005,6 +1007,7 @@ def _get_task_instances(
         state: TaskInstanceState | Sequence[TaskInstanceState],
         include_dependent_dags: bool,
         exclude_task_ids: Collection[str | tuple[str, int]] | None,
+        exclude_run_ids: frozenset[str] | None,
         session: Session,
         dag_bag: DagBag | None = ...,
         recursion_depth: int = ...,
@@ -1023,6 +1026,7 @@ def _get_task_instances(
         state: TaskInstanceState | Sequence[TaskInstanceState],
         include_dependent_dags: bool,
         exclude_task_ids: Collection[str | tuple[str, int]] | None,
+        exclude_run_ids: frozenset[str] | None,
         session: Session,
         dag_bag: DagBag | None = None,
         recursion_depth: int = 0,
@@ -1080,6 +1084,9 @@ def _get_task_instances(
                 else:
                     tis = tis.where(TaskInstance.state.in_(state))
 
+        if exclude_run_ids:
+            tis = tis.where(not_(TaskInstance.run_id.in_(exclude_run_ids)))
+
         if include_dependent_dags:
             # Recursively find external tasks indicated by ExternalTaskMarker
             from airflow.sensors.external_task import ExternalTaskMarker
@@ -1152,6 +1159,7 @@ def _get_task_instances(
                             include_dependent_dags=include_dependent_dags,
                             as_pk_tuple=True,
                             exclude_task_ids=exclude_task_ids,
+                            exclude_run_ids=exclude_run_ids,
                             dag_bag=dag_bag,
                             session=session,
                             recursion_depth=recursion_depth + 1,
@@ -1270,9 +1278,9 @@ def set_task_instance_state(
             # Exclude the task itself from being cleared.
             "exclude_task_ids": frozenset((task_id,)),
         }
-
         if not future and not past:  # Simple case 1: we're only dealing with exactly one run.
             clear_kwargs["run_id"] = run_id
+            subdag.clear(**clear_kwargs)
         elif future and past:  # Simple case 2: we're clearing ALL runs.
             subdag.clear(**clear_kwargs)
         else:  # Complex cases: we may have more than one run, based on a date range.
@@ -1287,7 +1295,6 @@ def set_task_instance_state(
                 clear_kwargs["end_date"] = logical_date
                 exclude_run_id_stmt = exclude_run_id_stmt.where(DagRun.id < dr_id)
             subdag.clear(exclude_run_ids=frozenset(session.scalars(exclude_run_id_stmt)), **clear_kwargs)
-
         return altered
 
     @provide_session
@@ -1395,6 +1402,7 @@ def clear(
         session: Session = NEW_SESSION,
         dag_bag: DagBag | None = None,
         exclude_task_ids: frozenset[str] | frozenset[tuple[str, int]] | None = frozenset(),
+        exclude_run_ids: frozenset[str] | None = frozenset(),
     ) -> list[TaskInstance]: ...  # pragma: no cover
 
     @overload
@@ -1412,6 +1420,7 @@ def clear(
         session: Session = NEW_SESSION,
         dag_bag: DagBag | None = None,
         exclude_task_ids: frozenset[str] | frozenset[tuple[str, int]] | None = frozenset(),
+        exclude_run_ids: frozenset[str] | None = frozenset(),
     ) -> int: ...  # pragma: no cover
 
     @provide_session
@@ -1448,6 +1457,7 @@ def clear(
         :param dag_bag: The DagBag used to find the dags (Optional)
         :param exclude_task_ids: A set of ``task_id`` or (``task_id``, ``map_index``)
             tuples that should not be cleared
+        :param exclude_run_ids: A set of ``run_id`` or (``run_id``)
         """
         state: list[TaskInstanceState] = []
         if only_failed:
@@ -1466,6 +1476,7 @@ def clear(
             session=session,
             dag_bag=dag_bag,
             exclude_task_ids=exclude_task_ids,
+            exclude_run_ids=exclude_run_ids,
         )
 
         if dry_run: