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environment.yml
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name: MLPM
channels:
- bioconda
- anaconda
- https://levinthal:paradox@conda.graylab.jhu.edu
- https://conda.graylab.jhu.edu/
- conda-forge
- defaults
dependencies:
- absl-py=0.11.0=py38h50d1736_0
- alabaster=0.7.12=py_0
- appdirs=1.4.4=pyh9f0ad1d_0
- appnope=0.1.0=py38_1001
- argon2-cffi=20.1.0=py38haf1e3a3_1
- async_generator=1.10=py_0
- babel=2.9.0=pyhd3deb0d_0
- backcall=0.2.0=py_0
- beautifulsoup4=4.9.3=pyhb0f4dca_0
- biopython=1.78=py38h5406a74_1
- bioservices=1.7.11=pyh3252c3a_0
- blas=1.0=mkl
- bleach=3.2.1=py_0
- brotlipy=0.7.0=py38h5406a74_1001
- c-ares=1.17.1=hc929b4f_0
- ca-certificates=2020.12.5=h033912b_0
- certifi=2020.12.5=py38h50d1736_1
- cffi=1.14.3=py38hed5b41f_0
- chardet=4.0.0=py38h50d1736_1
- colorama=0.4.4=pyh9f0ad1d_0
- cryptography=3.3.1=py38h6b4ec92_1
- cycler=0.10.0=py_2
- dbus=1.13.18=h18a8e69_0
- decorator=4.4.2=py_0
- defusedxml=0.6.0=py_0
- docutils=0.16=py38h50d1736_3
- easydev=0.10.1=pyh9f0ad1d_0
- entrypoints=0.3=py38_0
- expat=2.2.10=hb1e8313_2
- freetype=2.10.4=h4cff582_1
- gettext=0.19.8.1=h15daf44_3
- gevent=21.1.2=py38h5406a74_0
- glib=2.66.1=h9bbe63b_0
- greenlet=0.4.17=py38h5406a74_2
- grequests=0.6.0=pyh9f0ad1d_0
- icu=58.2=h0a44026_3
- idna=2.10=pyh9f0ad1d_0
- imagesize=1.2.0=py_0
- importlib-metadata=2.0.0=py_1
- importlib_metadata=2.0.0=1
- intel-openmp=2020.2=258
- ipykernel=5.3.4=py38h5ca1d4c_0
- ipython=7.18.1=py38h5ca1d4c_0
- ipython_genutils=0.2.0=py38_0
- ipywidgets=7.5.1=py_1
- jaxlib=0.1.59=py38h50d1736_0
- jedi=0.18.0=py38h50d1736_2
- jinja2=2.11.2=py_0
- jpeg=9b=he5867d9_2
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=3.2.0=py_2
- jupyter=1.0.0=py38_7
- jupyter_client=6.1.7=py_0
- jupyter_console=6.2.0=py_0
- jupyter_core=4.6.3=py38_0
- jupyterlab=2.2.9=pyhd8ed1ab_0
- jupyterlab_pygments=0.1.2=py_0
- jupyterlab_server=1.2.0=py_0
- kiwisolver=1.3.1=py38h23ab428_0
- libcxx=10.0.0=1
- libedit=3.1.20191231=h1de35cc_1
- libev=4.33=haf1e3a3_1
- libffi=3.3=hb1e8313_2
- libgfortran=3.0.1=0
- libiconv=1.16=h1de35cc_0
- libpng=1.6.37=ha441bb4_0
- libsodium=1.0.18=h1de35cc_0
- libuv=1.40.0=h35c211d_0
- markupsafe=1.1.1=py38h1de35cc_1
- matplotlib=3.2.2=1
- matplotlib-base=3.2.2=py38h1300a51_1
- mistune=0.8.4=py38h1de35cc_1001
- mkl=2019.4=233
- mkl-service=2.3.0=py38hfbe908c_0
- mkl_fft=1.2.0=py38hc64f4ea_0
- mkl_random=1.1.1=py38h959d312_0
- nbclient=0.5.1=py_0
- nbconvert=6.0.7=py38_0
- nbformat=5.0.8=py_0
- ncurses=6.2=h0a44026_1
- nest-asyncio=1.4.1=py_0
- notebook=6.1.4=py38_0
- numpy=1.19.1=py38h3b9f5b6_0
- numpy-base=1.19.1=py38hcfb5961_0
- numpydoc=1.1.0=py_1
- openssl=1.1.1i=h35c211d_0
- opt_einsum=3.3.0=py_0
- pandas=1.1.3=py38hb1e8313_0
- pandoc=2.11=h0dc7051_0
- pandocfilters=1.4.2=py38_1
- parso=0.8.0=py_0
- pcre=8.44=hb1e8313_0
- pexpect=4.8.0=py38_1
- pickleshare=0.7.5=py38_1001
- pip=20.2.4=py38_0
- prometheus_client=0.8.0=py_0
- prompt-toolkit=3.0.8=py_0
- prompt_toolkit=3.0.8=0
- ptyprocess=0.6.0=py38_0
- pycparser=2.20=py_2
- pygments=2.7.1=py_0
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyparsing=2.4.7=py_0
- pyqt=5.9.2=py38h655552a_2
- pyrsistent=0.17.3=py38haf1e3a3_0
- pysocks=1.7.1=py38h50d1736_3
- python=3.8.5=h26836e1_1
- python-dateutil=2.8.1=py_0
- python-flatbuffers=1.12=pyhd8ed1ab_0
- python_abi=3.8=1_cp38
- pytz=2020.1=py_0
- pyzmq=19.0.2=py38hb1e8313_1
- qt=5.9.7=h468cd18_1
- qtconsole=4.7.7=py_0
- qtpy=1.9.0=py_0
- readline=8.0=h1de35cc_0
- requests=2.25.1=pyhd3deb0d_0
- requests-cache=0.5.0=py_0
- scipy=1.6.0=py38h2515648_0
- seaborn=0.11.0=py_0
- send2trash=1.5.0=py38_0
- setuptools=50.3.0=py38h0dc7051_1
- sip=4.19.8=py38h0a44026_0
- six=1.15.0=py_0
- snowballstemmer=2.1.0=pyhd8ed1ab_0
- soupsieve=2.0.1=py_1
- sphinx=3.4.3=pyhd8ed1ab_0
- sphinxcontrib-applehelp=1.0.2=py_0
- sphinxcontrib-devhelp=1.0.2=py_0
- sphinxcontrib-htmlhelp=1.0.3=py_0
- sphinxcontrib-jsmath=1.0.1=py_0
- sphinxcontrib-qthelp=1.0.3=py_0
- sphinxcontrib-serializinghtml=1.1.4=py_0
- sqlite=3.33.0=hffcf06c_0
- suds-jurko=0.6=py38h50d1736_1005
- terminado=0.9.1=py38_0
- testpath=0.4.4=py_0
- tk=8.6.10=hb0a8c7a_0
- tornado=6.0.4=py38h1de35cc_1
- traitlets=5.0.5=py_0
- urllib3=1.26.3=pyhd8ed1ab_0
- wcwidth=0.2.5=py_0
- webencodings=0.5.1=py38_1
- wheel=0.35.1=py_0
- widgetsnbextension=3.5.1=py38_0
- wrapt=1.12.1=py38h5406a74_3
- xz=5.2.5=h1de35cc_0
- zeromq=4.3.3=hb1e8313_3
- zipp=3.3.1=py_0
- zlib=1.2.11=h1de35cc_3
- zope.event=4.5.0=pyh9f0ad1d_0
- zope.interface=5.2.0=py38h5406a74_1
- pip:
- alembic==1.5.4
- attrs==20.3.0
- cliff==3.6.0
- cmaes==0.8.0
- cmd2==1.5.0
- colorlog==4.7.2
- jax==0.1.77
- jax-unirep==2.0.1
- joblib==1.0.0
- mako==1.1.4
- multipledispatch==0.6.0
- optuna==2.5.0
- packaging==20.9
- pbr==5.5.1
- prettytable==0.7.2
- pyperclip==1.8.1
- python-editor==1.0.4
- pyyaml==5.4.1
- scikit-learn==0.24.1
- sqlalchemy==1.3.23
- stevedore==3.3.0
- threadpoolctl==2.1.0
- tqdm==4.56.0
- uniprot==1.3
prefix: /Users/andrew/anaconda3/envs/MLPM