Code

Test gnu#1

Code

Closed

alperaltuntas wants to merge 86 commits intodev/ncaralperaltuntas/MOM6:dev/ncarfrom test_gnualperaltuntas/MOM6:test_gnuCopy head branch name to clipboard

+2,472-1,522

Commits

Commits on Mar 9, 2018

• Changed multi-word names from camelCase to snake_case

  gustavo-marques

  committed
  71ff26b

  Copy full SHA for 71ff26b

Commits on Mar 12, 2018

• Copy OBLdepth from KPP into visc%MLD and Hml

  gustavo-marques

  committed
  c6327d6

  Copy full SHA for c6327d6

• Add comments for adding additonal CVMix components and clean module

  gustavo-marques

  committed
  dca5736

  Copy full SHA for dca5736

• Adding first version of convection calls via CVMix

  gustavo-marques

  committed
  97152b1

  Copy full SHA for 97152b1

• Updates visc%Kd_turb and visc%Kv_turb after convection is applied

  gustavo-marques

  committed
  c99e94b

  Copy full SHA for c99e94b

Commits on Mar 13, 2018

• Added function to copy KPP surface boundary layer depth into BLD

  gustavo-marques

  committed
  fc00e77

  Copy full SHA for fc00e77

• Added call to KPP_get_BLD

  gustavo-marques

  committed
  7f6d8f1

  Copy full SHA for 7f6d8f1

• Fix array allocattion/dealocation

  Show description for e84f706
  gustavo-marques

  committed
  e84f706

  Copy full SHA for e84f706

• Added a call to diabatic_driver_end

  gustavo-marques

  committed
  a209b7a

  Copy full SHA for a209b7a

• Dealocate memory via cvmix_shear_end and changed some var names to snake_case convention

  gustavo-marques

  committed
  f12702c

  Copy full SHA for f12702c

• Fixed a bug in the deallocate call

  gustavo-marques

  committed
  a77d114

  Copy full SHA for a77d114

• Fixed a bug in the deallocate call

  gustavo-marques

  committed
  afd8f59

  Copy full SHA for afd8f59

Commits on Mar 14, 2018

• Changed hbl to an optional pointer; do not apply mixing due to convection within the boundary layer

  gustavo-marques

  committed
  1d850a6

  Copy full SHA for 1d850a6

Commits on Mar 15, 2018

• Add the new module MOM_cvmix_tidal

  alperaltuntas

  committed
  c78ac9a

  Copy full SHA for c78ac9a

• Added function cvmix_conv_is_used and register restart fields.

  Show description for ba2a0a4
  gustavo-marques

  committed
  ba2a0a4

  Copy full SHA for ba2a0a4

• Updated mixing coeff. due to convection

  Show description for 941bfb6
  gustavo-marques

  committed
  941bfb6

  Copy full SHA for 941bfb6

Commits on Mar 16, 2018

• update diabatic driver for MOM_cvmix_tidal module

  alperaltuntas

  committed
  c2dea88

  Copy full SHA for c2dea88

• Rename MOM_cvmix_tidal module as MOM_tidal_mixing (for now)

  alperaltuntas

  committed
  95406ff

  Copy full SHA for 95406ff

• Move tidal mixing initialization to MOM_tidal_mixing

  alperaltuntas

  committed
  76546aa

  Copy full SHA for 76546aa

Commits on Mar 19, 2018

• Move diags back from MOM_tidal_mixing to MOM_set_diffusivity (for now)

  alperaltuntas

  committed
  c34ab63

  Copy full SHA for c34ab63

• Mv add_int_tide_diffusivity to tidal_mixing module

  alperaltuntas

  committed
  22902de

  Copy full SHA for 22902de

• uncomment cvmix_init_tidal

  alperaltuntas

  committed
  0bb899a

  Copy full SHA for 0bb899a

• Deleted module MOM_diffConvection

  Show description for 53004ec
  gustavo-marques

  committed
  53004ec

  Copy full SHA for 53004ec

Commits on Mar 20, 2018

• Reduced the numbers of characters in a line

  gustavo-marques

  committed
  a101e49

  Copy full SHA for a101e49

Commits on Mar 21, 2018

• Updated CVMix

  gustavo-marques

  committed
  83089ff

  Copy full SHA for 83089ff

Commits on Mar 22, 2018

• Fixed a problem in cvmix_init_bkgnd_BryanLewis_low

  gustavo-marques

  committed
  1116f49

  Copy full SHA for 1116f49

• Added first version of MOM_bkgnd_mixing

  Show description for 1be0248
  gustavo-marques

  committed
  1be0248

  Copy full SHA for 1be0248

• Deleted code that has been moved to MOM_bkgnd_mixing.F90

  gustavo-marques

  committed
  08db85c

  Copy full SHA for 08db85c

Commits on Mar 23, 2018

• Renamed Bryan&Lewis coeffs and added a 3D array for depth

  gustavo-marques

  committed
  8ef5a1b

  Copy full SHA for 8ef5a1b

• Added a if statement to check if Int_tide_dissipation and Bryan_Lewis are used at the same time.

  gustavo-marques

  committed
  4e8dd5a

  Copy full SHA for 4e8dd5a

Commits on Mar 26, 2018

• Read in tidal energy dissipation

  alperaltuntas

  committed
  f361002

  Copy full SHA for f361002

• Update to new CVMix tag with tidal mixing changes

  alperaltuntas

  committed
  3fcdb4c

  Copy full SHA for 3fcdb4c

• Re-structured MOM_bkgnd_mixing

  Show description for 7a81871
  gustavo-marques

  committed
  7a81871

  Copy full SHA for 7a81871

Commits on Mar 27, 2018

• Add timestep initializations to calculate_cvmix_tidal

  alperaltuntas

  committed
  d1cee89

  Copy full SHA for d1cee89

Commits on Mar 28, 2018

• Added calculate_cvmix_tidal interface

  alperaltuntas

  committed
  e992292

  Copy full SHA for e992292

Commits on Mar 30, 2018

• Renamed variables (KH to kd; KM to kv) and added diagnostics

  gustavo-marques

  committed
  4cac1e1

  Copy full SHA for 4cac1e1

• Added a unique Prandtl # for convection and background

  gustavo-marques

  committed
  69ab998

  Copy full SHA for 69ab998

• update Kd

  alperaltuntas

  committed
  7376f49

  Copy full SHA for 7376f49

• Replaced Kd_turb -> Kd_shear and Kv_turb -> Kv_shear

  gustavo-marques

  committed
  6a2e864

  Copy full SHA for 6a2e864

• Replaced Kv_turb -> Kv_shear

  gustavo-marques

  committed
  644f200

  Copy full SHA for 644f200

• Replaced Kv_turb -> Kv_shear

  gustavo-marques

  committed
  80c33a4

  Copy full SHA for 80c33a4

Commits on Mar 31, 2018

• Add tidal parameter consistency checks.

  alperaltuntas

  committed
  a3155d6

  Copy full SHA for a3155d6

Commits on Apr 1, 2018

• correct tidal energy file dir

  alperaltuntas

  committed
  2430f6e

  Copy full SHA for 2430f6e

Commits on Apr 2, 2018

• Move tidal diagnostics to MOM_tidal_mixing module

  alperaltuntas

  committed
  8977888

  Copy full SHA for 8977888

• Added variable Kv_slow in visc type

  gustavo-marques

  committed
  801a86a

  Copy full SHA for 801a86a

Commits on Apr 3, 2018

• Allocated/deallocate visc%Kv_slow

  gustavo-marques

  committed
  e544290

  Copy full SHA for e544290

• Add viscosities due to convection into visc%Kv_slow

  gustavo-marques

  committed
  105094f

  Copy full SHA for 105094f

• Renamed kd_bkgnd_3d -> kd_bkgnd; kv_bkgnd_3d -> kv_bkgnd

  gustavo-marques

  committed
  37ca38f

  Copy full SHA for 37ca38f

• Changed name in register_diag_field kd_shear -> kd_shear_cvmix; kv_shear -> kv_shear_cvmix

  gustavo-marques

  committed
  a2498a1

  Copy full SHA for a2498a1

• Add vertical background viscosity into visc%Kv_slow

  gustavo-marques

  committed
  c1acec8

  Copy full SHA for c1acec8

• Rename kv_conv -> kv_conv_const; kd_conv -> kd_conv_const

  gustavo-marques

  committed
  648018e

  Copy full SHA for 648018e

• add tidal diagnostics for cvmix

  alperaltuntas

  committed
  ea813b8

  Copy full SHA for ea813b8

• Raname variables Kd -> kd_lay; visc%Kv_slow - > kv

  gustavo-marques

  committed
  1218973

  Copy full SHA for 1218973

Commits on Apr 4, 2018

• By pass reading BULKMIXEDLAYER via get_param

  Show description for 0ce9980
  gustavo-marques

  committed
  0ce9980

  Copy full SHA for 0ce9980

• Changed kv to a pointer since it might not always be associated

  gustavo-marques

  committed
  36f7a06

  Copy full SHA for 36f7a06

• Avoided a possible seg. fault in set_diffusivity_end

  gustavo-marques

  committed
  4dde603

  Copy full SHA for 4dde603

Commits on Apr 5, 2018

• Merge pull request NCAR#44 from NCAR/adding_cvmix

  Show description for 78bb40c
  alperaltuntas

  authored
  78bb40c

  Copy full SHA for 78bb40c

• debug calculate_cvmix_tidal

  alperaltuntas

  committed
  3e7cab8

  Copy full SHA for 3e7cab8

• MOM_tidal_mixing. cleaanup

  alperaltuntas

  committed
  696462c

  Copy full SHA for 696462c

• Merged with latest master

  alperaltuntas

  committed
  81a5ef8

  Copy full SHA for 81a5ef8

• add tidal mixing-specific prandtl number

  alperaltuntas

  committed
  bf322c8

  Copy full SHA for bf322c8

Commits on Apr 6, 2018

• Merge pull request NCAR#46 from alperaltuntas/introduce_cvmix_tidal

  Show description for 86e7074
  gustavo-marques

  authored
  86e7074

  Copy full SHA for 86e7074

Commits on Apr 17, 2018

• fix tidal_mixing_init return

  alperaltuntas

  committed
  01578c5

  Copy full SHA for 01578c5

• Merge pull request NCAR#47 from alperaltuntas/introduce_cvmix_tidal

  Show description for 869d32f
  gustavo-marques

  authored
  869d32f

  Copy full SHA for 869d32f

Commits on Apr 18, 2018

• Fixes bug and renames variables

  gustavo-marques

  committed
  caf1d1e

  Copy full SHA for caf1d1e

• Merge pull request NCAR#48 from gustavo-marques/fix_cvmix_convection

  Show description for 5f19507
  gustavo-marques

  authored
  5f19507

  Copy full SHA for 5f19507

• Updates CVMix

  gustavo-marques

  committed
  69bf4fa

  Copy full SHA for 69bf4fa

• Remove trailing space

  gustavo-marques

  committed
  d07120c

  Copy full SHA for d07120c

• Merge pull request NCAR#49 from gustavo-marques/update_cvmix

  Show description for 93eee52
  gustavo-marques

  authored
  93eee52

  Copy full SHA for 93eee52

• Attempt to fix deallocating unallocated arrays

  Show description for 5640daf
  gustavo-marques

  committed
  5640daf

  Copy full SHA for 5640daf

• Update CVMix

  gustavo-marques

  committed
  dabe31b

  Copy full SHA for dabe31b

• Return call if CS is not allocated

  gustavo-marques

  committed
  dc82c48

  Copy full SHA for dc82c48

• Commenting out deallocation of KPP related arrays

  gustavo-marques

  committed
  dde5a59

  Copy full SHA for dde5a59

• Commenting out call to diabatic_driver_end in MOM.F90

  gustavo-marques

  committed
  43b7968

  Copy full SHA for 43b7968

Commits on Apr 19, 2018

• initialize boolean control vars in tidal mixing mod

  alperaltuntas

  committed
  5153869

  Copy full SHA for 5153869

• Merge remote-tracking branch 'gmarques/fix_travis_deallocation' into initialize_tidal_ctrl_vars

  alperaltuntas

  committed
  334f124

  Copy full SHA for 334f124

• Merge pull request NCAR#52 from alperaltuntas/initialize_tidal_ctrl_vars

  Show description for dab30b6
  gustavo-marques

  authored
  dab30b6

  Copy full SHA for dab30b6

• Uncomment calls to deallocate KPP related arrays

  gustavo-marques

  committed
  2800524

  Copy full SHA for 2800524

• Set useKPP = .false. (default) and comment call to diag_grid_storage_end

  gustavo-marques

  committed
  65527d6

  Copy full SHA for 65527d6

• Return if CS is not associated

  gustavo-marques

  committed
  e90fbe9

  Copy full SHA for e90fbe9

• Comment call diabatic_driver_end to check if Travis still fails

  gustavo-marques

  committed
  4671c07

  Copy full SHA for 4671c07

• Un-comment call diabatic_driver_end

  gustavo-marques

  committed
  9f4ce3a

  Copy full SHA for 9f4ce3a

Commits on Apr 20, 2018

• Comment call diabatic_driver_end

  gustavo-marques

  committed
  165a5eb

  Copy full SHA for 165a5eb

• Merge pull request NCAR#54 from gustavo-marques/deallocate_diabatic

  Show description for 4b21263
  gustavo-marques

  authored
  4b21263

  Copy full SHA for 4b21263

Commits on Apr 23, 2018

• Replace cvmix with CVMix

  gustavo-marques

  committed
  648f31b

  Copy full SHA for 648f31b

• Merge pull request NCAR#55 from gustavo-marques/deallocate_diabatic

  Show description for 8050958
  gustavo-marques

  authored
  8050958

  Copy full SHA for 8050958