Many bugs in different packages compatibility in the previous version and building failed in the new version

[idkaavan]

$ pip install .
Processing /scenicplus
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting loomxpy@ git+https://github.com/aertslab/LoomXpy@main (from scenicplus==1.0a1)
Cloning https://github.com/aertslab/LoomXpy (to revision main) to /tmp/pip-install-txiceqqw/loomxpy_5f54f984aca3446193d1ee31ece04295
Running command git clone --filter=blob:none --quiet https://github.com/aertslab/LoomXpy /tmp/pip-install-txiceqqw/loomxpy_5f54f984aca3446193d1ee31ece04295
Resolved https://github.com/aertslab/LoomXpy to commit 61995ff10940968eac2cee8fe48300ab477a15d0
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting pycistarget@ git+https://github.com/aertslab/pycistarget (from scenicplus==1.0a1)
Cloning https://github.com/aertslab/pycistarget to /tmp/pip-install-txiceqqw/pycistarget_6de02b8b706741208a420a630acaac78
Running command git clone --filter=blob:none --quiet https://github.com/aertslab/pycistarget /tmp/pip-install-txiceqqw/pycistarget_6de02b8b706741208a420a630acaac78
Resolved https://github.com/aertslab/pycistarget to commit 8cd78f110f4eeeb38d8f7006a1100a13d636d984
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting pycistopic@ git+https://github.com/aertslab/pycisTopic (from scenicplus==1.0a1)
Cloning https://github.com/aertslab/pycisTopic to /tmp/pip-install-txiceqqw/pycistopic_5b0307fe9b244a25b0e253df5fd06880
Running command git clone --filter=blob:none --quiet https://github.com/aertslab/pycisTopic /tmp/pip-install-txiceqqw/pycistopic_5b0307fe9b244a25b0e253df5fd06880
Resolved https://github.com/aertslab/pycisTopic to commit 787ce422a37f5975b0ebb9e7b19eeaed44847501
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting pyscenic@ git+https://github.com/aertslab/pySCENIC@master (from scenicplus==1.0a1)
Cloning https://github.com/aertslab/pySCENIC (to revision master) to /tmp/pip-install-txiceqqw/pyscenic_afb5a5827351424dbe10c974e4701022
Running command git clone --filter=blob:none --quiet https://github.com/aertslab/pySCENIC /tmp/pip-install-txiceqqw/pyscenic_afb5a5827351424dbe10c974e4701022
Resolved https://github.com/aertslab/pySCENIC to commit d2309fed83759a0e66e0a995ef3d2f40bf4d6c1a
Preparing metadata (setup.py) ... done
Collecting adjusttext==1.0.4 (from scenicplus==1.0a1)
Using cached adjustText-1.0.4-py3-none-any.whl.metadata (3.0 kB)
Collecting aiohttp==3.9.3 (from scenicplus==1.0a1)
Using cached aiohttp-3.9.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.4 kB)
Collecting aiosignal==1.3.1 (from scenicplus==1.0a1)
Using cached aiosignal-1.3.1-py3-none-any.whl.metadata (4.0 kB)
Collecting anndata==0.10.5.post1 (from scenicplus==1.0a1)
Using cached anndata-0.10.5.post1-py3-none-any.whl.metadata (6.5 kB)
Collecting annoy==1.17.3 (from scenicplus==1.0a1)
Using cached annoy-1.17.3-cp311-cp311-linux_x86_64.whl
Collecting appdirs==1.4.4 (from scenicplus==1.0a1)
Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
Collecting arboreto==0.1.6 (from scenicplus==1.0a1)
Using cached arboreto-0.1.6-py2.py3-none-any.whl.metadata (5.4 kB)
Collecting argparse-dataclass==2.0.0 (from scenicplus==1.0a1)
Using cached argparse_dataclass-2.0.0-py3-none-any.whl.metadata (7.2 kB)
Collecting array-api-compat==1.5.1 (from scenicplus==1.0a1)
Using cached array_api_compat-1.5.1-py3-none-any.whl.metadata (1.3 kB)
Collecting asttokens==2.4.1 (from scenicplus==1.0a1)
Using cached asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB)
Collecting attr==0.3.2 (from scenicplus==1.0a1)
Using cached attr-0.3.2-py2.py3-none-any.whl.metadata (1.2 kB)
Collecting attrs==23.2.0 (from scenicplus==1.0a1)
Using cached attrs-23.2.0-py3-none-any.whl.metadata (9.5 kB)
Collecting bbknn==1.6.0 (from scenicplus==1.0a1)
Using cached bbknn-1.6.0-py3-none-any.whl.metadata (8.2 kB)
Collecting beautifulsoup4==4.12.3 (from scenicplus==1.0a1)
Using cached beautifulsoup4-4.12.3-py3-none-any.whl.metadata (3.8 kB)
Collecting bidict==0.23.1 (from scenicplus==1.0a1)
Using cached bidict-0.23.1-py3-none-any.whl.metadata (8.7 kB)
Collecting bioservices==1.11.2 (from scenicplus==1.0a1)
Using cached bioservices-1.11.2-py3-none-any.whl
Collecting blosc2==2.5.1 (from scenicplus==1.0a1)
Using cached blosc2-2.5.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
Collecting bokeh==3.4.0 (from scenicplus==1.0a1)
Using cached bokeh-3.4.0-py3-none-any.whl.metadata (12 kB)
Collecting boltons==23.1.1 (from scenicplus==1.0a1)
Using cached boltons-23.1.1-py2.py3-none-any.whl.metadata (1.4 kB)
Collecting bs4==0.0.2 (from scenicplus==1.0a1)
Using cached bs4-0.0.2-py2.py3-none-any.whl.metadata (411 bytes)
Collecting cattrs==23.2.3 (from scenicplus==1.0a1)
Using cached cattrs-23.2.3-py3-none-any.whl.metadata (10 kB)
Collecting certifi==2024.2.2 (from scenicplus==1.0a1)
Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
Collecting charset-normalizer==3.3.2 (from scenicplus==1.0a1)
Using cached charset_normalizer-3.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting click==8.1.7 (from scenicplus==1.0a1)
Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB)
Collecting cloudpickle==3.0.0 (from scenicplus==1.0a1)
Using cached cloudpickle-3.0.0-py3-none-any.whl.metadata (7.0 kB)
Collecting colorama==0.4.6 (from scenicplus==1.0a1)
Using cached colorama-0.4.6-py2.py3-none-any.whl.metadata (17 kB)
Collecting colorlog==6.8.2 (from scenicplus==1.0a1)
Using cached colorlog-6.8.2-py3-none-any.whl.metadata (10 kB)
Collecting conda-inject==1.3.1 (from scenicplus==1.0a1)
Using cached conda_inject-1.3.1-py3-none-any.whl.metadata (855 bytes)
Collecting configargparse==1.7 (from scenicplus==1.0a1)
Using cached ConfigArgParse-1.7-py3-none-any.whl.metadata (23 kB)
Collecting connection-pool==0.0.3 (from scenicplus==1.0a1)
Using cached connection_pool-0.0.3-py3-none-any.whl
Collecting contourpy==1.2.0 (from scenicplus==1.0a1)
Using cached contourpy-1.2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB)
Collecting ctxcore==0.2.0 (from scenicplus==1.0a1)
Using cached ctxcore-0.2.0-py3-none-any.whl.metadata (3.1 kB)
Collecting cycler==0.12.1 (from scenicplus==1.0a1)
Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting cython==0.29.37 (from scenicplus==1.0a1)
Using cached Cython-0.29.37-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (3.1 kB)
Collecting cytoolz==0.12.3 (from scenicplus==1.0a1)
Using cached cytoolz-0.12.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.6 kB)
Collecting dask==2024.2.1 (from dask[array,complete,dataframe,diagnostics,distributed]==2024.2.1->scenicplus==1.0a1)
Using cached dask-2024.2.1-py3-none-any.whl.metadata (3.7 kB)
Collecting dataclasses-json==0.6.4 (from scenicplus==1.0a1)
Using cached dataclasses_json-0.6.4-py3-none-any.whl.metadata (25 kB)
Collecting datrie==0.8.2 (from scenicplus==1.0a1)
Using cached datrie-0.8.2-cp311-cp311-linux_x86_64.whl
Collecting decorator==5.1.1 (from scenicplus==1.0a1)
Using cached decorator-5.1.1-py3-none-any.whl.metadata (4.0 kB)
Collecting dill==0.3.8 (from scenicplus==1.0a1)
Using cached dill-0.3.8-py3-none-any.whl.metadata (10 kB)
Collecting distributed==2024.2.1 (from scenicplus==1.0a1)
Using cached distributed-2024.2.1-py3-none-any.whl.metadata (3.4 kB)
Collecting docutils==0.20.1 (from scenicplus==1.0a1)
Using cached docutils-0.20.1-py3-none-any.whl.metadata (2.8 kB)
Collecting dpath==2.1.6 (from scenicplus==1.0a1)
Using cached dpath-2.1.6-py3-none-any.whl.metadata (15 kB)
Collecting easydev==0.13.1 (from scenicplus==1.0a1)
Using cached easydev-0.13.1-py3-none-any.whl.metadata (3.5 kB)
Collecting et-xmlfile==1.1.0 (from scenicplus==1.0a1)
Using cached et_xmlfile-1.1.0-py3-none-any.whl.metadata (1.8 kB)
Collecting executing==2.0.1 (from scenicplus==1.0a1)
Using cached executing-2.0.1-py2.py3-none-any.whl.metadata (9.0 kB)
Collecting fastjsonschema==2.19.1 (from scenicplus==1.0a1)
Using cached fastjsonschema-2.19.1-py3-none-any.whl.metadata (2.1 kB)
Collecting fbpca==1.0 (from scenicplus==1.0a1)
Using cached fbpca-1.0-py3-none-any.whl
Collecting filelock==3.13.1 (from scenicplus==1.0a1)
Using cached filelock-3.13.1-py3-none-any.whl.metadata (2.8 kB)
Collecting fonttools==4.50.0 (from scenicplus==1.0a1)
Using cached fonttools-4.50.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (159 kB)
Collecting frozendict==2.4.0 (from scenicplus==1.0a1)
Using cached frozendict-2.4.0-py3-none-any.whl
Collecting frozenlist==1.4.1 (from scenicplus==1.0a1)
Using cached frozenlist-1.4.1-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (12 kB)
Collecting fsspec==2024.3.1 (from scenicplus==1.0a1)
Using cached fsspec-2024.3.1-py3-none-any.whl.metadata (6.8 kB)
Collecting future==1.0.0 (from scenicplus==1.0a1)
Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting gensim==4.3.2 (from scenicplus==1.0a1)
Using cached gensim-4.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.3 kB)
Collecting geosketch==1.2 (from scenicplus==1.0a1)
Using cached geosketch-1.2-py3-none-any.whl.metadata (406 bytes)
Collecting gevent==24.2.1 (from scenicplus==1.0a1)
Using cached gevent-24.2.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (13 kB)
Collecting gitdb==4.0.11 (from scenicplus==1.0a1)
Using cached gitdb-4.0.11-py3-none-any.whl.metadata (1.2 kB)
Collecting gitpython==3.1.42 (from scenicplus==1.0a1)
Using cached GitPython-3.1.42-py3-none-any.whl.metadata (12 kB)
Collecting globre==0.1.5 (from scenicplus==1.0a1)
Using cached globre-0.1.5-py3-none-any.whl
Collecting greenlet==3.0.3 (from scenicplus==1.0a1)
Using cached greenlet-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.8 kB)
Collecting grequests==0.7.0 (from scenicplus==1.0a1)
Using cached grequests-0.7.0-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting gseapy==0.10.8 (from scenicplus==1.0a1)
Using cached gseapy-0.10.8-py3-none-any.whl.metadata (11 kB)
Collecting h5py==3.10.0 (from scenicplus==1.0a1)
Using cached h5py-3.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB)
Collecting harmonypy==0.0.9 (from scenicplus==1.0a1)
Using cached harmonypy-0.0.9-py3-none-any.whl.metadata (3.7 kB)
Collecting humanfriendly==10.0 (from scenicplus==1.0a1)
Using cached humanfriendly-10.0-py2.py3-none-any.whl.metadata (9.2 kB)
Collecting idna==3.6 (from scenicplus==1.0a1)
Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)
Collecting igraph==0.11.4 (from scenicplus==1.0a1)
Using cached igraph-0.11.4-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.9 kB)
Collecting imageio==2.34.0 (from scenicplus==1.0a1)
Using cached imageio-2.34.0-py3-none-any.whl.metadata (4.9 kB)
Collecting immutables==0.20 (from scenicplus==1.0a1)
Using cached immutables-0.20-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.6 kB)
Collecting importlib-metadata==7.0.1 (from scenicplus==1.0a1)
Using cached importlib_metadata-7.0.1-py3-none-any.whl.metadata (4.9 kB)
Collecting importlib-resources==6.1.2 (from scenicplus==1.0a1)
Using cached importlib_resources-6.1.2-py3-none-any.whl.metadata (3.9 kB)
Collecting interlap==0.2.7 (from scenicplus==1.0a1)
Using cached interlap-0.2.7-py3-none-any.whl
Collecting intervaltree==3.1.0 (from scenicplus==1.0a1)
Using cached intervaltree-3.1.0-py2.py3-none-any.whl
Collecting ipython==8.22.2 (from scenicplus==1.0a1)
Using cached ipython-8.22.2-py3-none-any.whl.metadata (4.8 kB)
Collecting jedi==0.19.1 (from scenicplus==1.0a1)
Using cached jedi-0.19.1-py2.py3-none-any.whl.metadata (22 kB)
Collecting jinja2==3.1.3 (from scenicplus==1.0a1)
Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
Collecting joblib==1.3.2 (from scenicplus==1.0a1)
Using cached joblib-1.3.2-py3-none-any.whl.metadata (5.4 kB)
Collecting jsonpickle==3.0.3 (from scenicplus==1.0a1)
Using cached jsonpickle-3.0.3-py3-none-any.whl.metadata (7.3 kB)
Collecting jsonschema==4.21.1 (from scenicplus==1.0a1)
Using cached jsonschema-4.21.1-py3-none-any.whl.metadata (7.8 kB)
Collecting jsonschema-specifications==2023.12.1 (from scenicplus==1.0a1)
Using cached jsonschema_specifications-2023.12.1-py3-none-any.whl.metadata (3.0 kB)
Collecting jupyter-core==5.7.2 (from scenicplus==1.0a1)
Using cached jupyter_core-5.7.2-py3-none-any.whl.metadata (3.4 kB)
Collecting kaleido==0.2.1 (from scenicplus==1.0a1)
Using cached kaleido-0.2.1-py2.py3-none-manylinux1_x86_64.whl.metadata (15 kB)
Collecting kiwisolver==1.4.5 (from scenicplus==1.0a1)
Using cached kiwisolver-1.4.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB)
Collecting lazy-loader==0.3 (from scenicplus==1.0a1)
Using cached lazy_loader-0.3-py3-none-any.whl.metadata (4.3 kB)
Collecting lda==3.0.0 (from scenicplus==1.0a1)
Using cached lda-3.0.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB)
Collecting leidenalg==0.10.2 (from scenicplus==1.0a1)
Using cached leidenalg-0.10.2-cp38-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (10 kB)
Collecting line-profiler==4.1.2 (from scenicplus==1.0a1)
Using cached line_profiler-4.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (31 kB)
Collecting llvmlite==0.42.0 (from scenicplus==1.0a1)
Using cached llvmlite-0.42.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.8 kB)
Collecting locket==1.0.0 (from scenicplus==1.0a1)
Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
Collecting loompy==3.0.7 (from scenicplus==1.0a1)
Using cached loompy-3.0.7-py3-none-any.whl
Collecting lxml==5.1.0 (from scenicplus==1.0a1)
Using cached lxml-5.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.5 kB)
Collecting lz4==4.3.3 (from scenicplus==1.0a1)
Using cached lz4-4.3.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.7 kB)
Collecting macs2==2.2.9.1 (from scenicplus==1.0a1)
Using cached MACS2-2.2.9.1-cp311-cp311-linux_x86_64.whl
Collecting markdown-it-py==3.0.0 (from scenicplus==1.0a1)
Using cached markdown_it_py-3.0.0-py3-none-any.whl.metadata (6.9 kB)
Collecting markupsafe==2.1.5 (from scenicplus==1.0a1)
Using cached MarkupSafe-2.1.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
Collecting marshmallow==3.21.1 (from scenicplus==1.0a1)
Using cached marshmallow-3.21.1-py3-none-any.whl.metadata (7.2 kB)
Collecting matplotlib==3.6.3 (from scenicplus==1.0a1)
Using cached matplotlib-3.6.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.8 kB)
Collecting matplotlib-inline==0.1.6 (from scenicplus==1.0a1)
Using cached matplotlib_inline-0.1.6-py3-none-any.whl.metadata (2.8 kB)
Collecting mdurl==0.1.2 (from scenicplus==1.0a1)
Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
Collecting mizani==0.9.3 (from scenicplus==1.0a1)
Using cached mizani-0.9.3-py3-none-any.whl.metadata (4.6 kB)
Collecting msgpack==1.0.8 (from scenicplus==1.0a1)
Using cached msgpack-1.0.8-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
Collecting mudata==0.2.3 (from scenicplus==1.0a1)
Using cached mudata-0.2.3-py3-none-any.whl.metadata (4.7 kB)
Collecting multidict==6.0.5 (from scenicplus==1.0a1)
Using cached multidict-6.0.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.2 kB)
Collecting multiprocessing-on-dill==3.5.0a4 (from scenicplus==1.0a1)
Using cached multiprocessing_on_dill-3.5.0a4-py3-none-any.whl
Collecting mypy-extensions==1.0.0 (from scenicplus==1.0a1)
Using cached mypy_extensions-1.0.0-py3-none-any.whl.metadata (1.1 kB)
Collecting natsort==8.4.0 (from scenicplus==1.0a1)
Using cached natsort-8.4.0-py3-none-any.whl.metadata (21 kB)
Collecting nbformat==5.10.3 (from scenicplus==1.0a1)
Using cached nbformat-5.10.3-py3-none-any.whl.metadata (3.6 kB)
Collecting ncls==0.0.68 (from scenicplus==1.0a1)
Using cached ncls-0.0.68-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.6 kB)
Collecting ndindex==1.8 (from scenicplus==1.0a1)
Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
Collecting networkx==3.2.1 (from scenicplus==1.0a1)
Using cached networkx-3.2.1-py3-none-any.whl.metadata (5.2 kB)
Collecting numba==0.59.0 (from scenicplus==1.0a1)
Using cached numba-0.59.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.7 kB)
Collecting numexpr==2.9.0 (from scenicplus==1.0a1)
Using cached numexpr-2.9.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
Collecting numpy==1.26.4 (from scenicplus==1.0a1)
Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
Collecting numpy-groupies==0.10.2 (from scenicplus==1.0a1)
Using cached numpy_groupies-0.10.2-py3-none-any.whl.metadata (18 kB)
Collecting openpyxl==3.1.2 (from scenicplus==1.0a1)
Using cached openpyxl-3.1.2-py2.py3-none-any.whl.metadata (2.5 kB)
Collecting packaging==24.0 (from scenicplus==1.0a1)
Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
Collecting pandas==1.5.0 (from scenicplus==1.0a1)
Using cached pandas-1.5.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB)
Collecting parso==0.8.3 (from scenicplus==1.0a1)
Using cached parso-0.8.3-py2.py3-none-any.whl.metadata (7.5 kB)
Collecting partd==1.4.1 (from scenicplus==1.0a1)
Using cached partd-1.4.1-py3-none-any.whl.metadata (4.6 kB)
Collecting patsy==0.5.6 (from scenicplus==1.0a1)
Using cached patsy-0.5.6-py2.py3-none-any.whl.metadata (3.5 kB)
Collecting pexpect==4.9.0 (from scenicplus==1.0a1)
Using cached pexpect-4.9.0-py2.py3-none-any.whl.metadata (2.5 kB)
Collecting pillow==10.2.0 (from scenicplus==1.0a1)
Using cached pillow-10.2.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (9.7 kB)
Collecting plac==1.4.3 (from scenicplus==1.0a1)
Using cached plac-1.4.3-py2.py3-none-any.whl.metadata (5.9 kB)
Collecting platformdirs==4.2.0 (from scenicplus==1.0a1)
Using cached platformdirs-4.2.0-py3-none-any.whl.metadata (11 kB)
Collecting plotly==5.19.0 (from scenicplus==1.0a1)
Using cached plotly-5.19.0-py3-none-any.whl.metadata (7.0 kB)
Collecting plotnine==0.12.4 (from scenicplus==1.0a1)
Using cached plotnine-0.12.4-py3-none-any.whl.metadata (8.9 kB)
Collecting polars==0.20.13 (from scenicplus==1.0a1)
Using cached polars-0.20.13-cp38-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (15 kB)
Collecting progressbar2==4.4.2 (from scenicplus==1.0a1)
Using cached progressbar2-4.4.2-py3-none-any.whl.metadata (17 kB)
Collecting prompt-toolkit==3.0.43 (from scenicplus==1.0a1)
Using cached prompt_toolkit-3.0.43-py3-none-any.whl.metadata (6.5 kB)
Collecting protobuf==5.26.0 (from scenicplus==1.0a1)
Using cached protobuf-5.26.0-cp37-abi3-manylinux2014_x86_64.whl.metadata (592 bytes)
Collecting psutil==5.9.8 (from scenicplus==1.0a1)
Using cached psutil-5.9.8-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (21 kB)
Collecting ptyprocess==0.7.0 (from scenicplus==1.0a1)
Using cached ptyprocess-0.7.0-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting pulp==2.8.0 (from scenicplus==1.0a1)
Using cached PuLP-2.8.0-py3-none-any.whl.metadata (5.4 kB)
Collecting pure-eval==0.2.2 (from scenicplus==1.0a1)
Using cached pure_eval-0.2.2-py3-none-any.whl.metadata (6.2 kB)
Collecting py-cpuinfo==9.0.0 (from scenicplus==1.0a1)
Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
Collecting pyarrow==15.0.0 (from scenicplus==1.0a1)
Using cached pyarrow-15.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
Collecting pyarrow-hotfix==0.6 (from scenicplus==1.0a1)
Using cached pyarrow_hotfix-0.6-py3-none-any.whl.metadata (3.6 kB)
Collecting pybedtools==0.9.1 (from scenicplus==1.0a1)
Using cached pybedtools-0.9.1-cp311-cp311-linux_x86_64.whl
Collecting pybigtools==0.1.2 (from scenicplus==1.0a1)
Using cached pybigtools-0.1.2-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (1.2 kB)
Collecting pybigwig==0.3.22 (from scenicplus==1.0a1)
Using cached pyBigWig-0.3.22-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
Collecting pybiomart==0.2.0 (from scenicplus==1.0a1)
Using cached pybiomart-0.2.0-py3-none-any.whl.metadata (1.1 kB)
Collecting pyfasta==0.5.2 (from scenicplus==1.0a1)
Using cached pyfasta-0.5.2-py3-none-any.whl
Collecting pygam==0.9.0 (from scenicplus==1.0a1)
Using cached pygam-0.9.0-py3-none-any.whl.metadata (7.0 kB)
Collecting pygments==2.17.2 (from scenicplus==1.0a1)
Using cached pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB)
Collecting pynndescent==0.5.11 (from scenicplus==1.0a1)
Using cached pynndescent-0.5.11-py3-none-any.whl.metadata (6.8 kB)
Collecting pyparsing==3.1.2 (from scenicplus==1.0a1)
Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB)
Collecting pyranges==0.0.111 (from scenicplus==1.0a1)
Using cached pyranges-0.0.111-py3-none-any.whl
Collecting pyrle==0.0.39 (from scenicplus==1.0a1)
Using cached pyrle-0.0.39-cp311-cp311-linux_x86_64.whl
Collecting pysam==0.22.0 (from scenicplus==1.0a1)
Using cached pysam-0.22.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (1.5 kB)
Collecting python-dateutil==2.9.0.post0 (from scenicplus==1.0a1)
Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting python-utils==3.8.2 (from scenicplus==1.0a1)
Using cached python_utils-3.8.2-py2.py3-none-any.whl.metadata (9.7 kB)
Collecting pytz==2024.1 (from scenicplus==1.0a1)
Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
Collecting pyvis==0.3.2 (from scenicplus==1.0a1)
Using cached pyvis-0.3.2-py3-none-any.whl.metadata (1.7 kB)
Collecting pyyaml==6.0.1 (from scenicplus==1.0a1)
Using cached PyYAML-6.0.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Collecting ray==2.9.3 (from scenicplus==1.0a1)
Using cached ray-2.9.3-cp311-cp311-manylinux2014_x86_64.whl.metadata (13 kB)
Collecting referencing==0.34.0 (from scenicplus==1.0a1)
Using cached referencing-0.34.0-py3-none-any.whl.metadata (2.8 kB)
Collecting requests==2.31.0 (from scenicplus==1.0a1)
Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
Collecting requests-cache==1.2.0 (from scenicplus==1.0a1)
Using cached requests_cache-1.2.0-py3-none-any.whl.metadata (9.9 kB)
Collecting reretry==0.11.8 (from scenicplus==1.0a1)
Using cached reretry-0.11.8-py2.py3-none-any.whl.metadata (5.5 kB)
Collecting rich==13.7.1 (from scenicplus==1.0a1)
Using cached rich-13.7.1-py3-none-any.whl.metadata (18 kB)
Collecting rich-argparse==1.4.0 (from scenicplus==1.0a1)
Using cached rich_argparse-1.4.0-py3-none-any.whl.metadata (14 kB)
Collecting rpds-py==0.18.0 (from scenicplus==1.0a1)
Using cached rpds_py-0.18.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.1 kB)
Collecting scanorama==1.7.4 (from scenicplus==1.0a1)
Using cached scanorama-1.7.4-py3-none-any.whl.metadata (525 bytes)
Collecting scanpy==1.8.2 (from scenicplus==1.0a1)
Using cached scanpy-1.8.2-py3-none-any.whl.metadata (5.8 kB)
Collecting scatac-fragment-tools==0.1.0 (from scenicplus==1.0a1)
Using cached scatac_fragment_tools-0.1.0-cp38-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.6 kB)
Collecting scikit-image==0.22.0 (from scenicplus==1.0a1)
Using cached scikit_image-0.22.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (13 kB)
Collecting scikit-learn==1.3.2 (from scenicplus==1.0a1)
Using cached scikit_learn-1.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB)
Collecting scipy==1.12.0 (from scenicplus==1.0a1)
Using cached scipy-1.12.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
Collecting scrublet==0.2.3 (from scenicplus==1.0a1)
Using cached scrublet-0.2.3-py3-none-any.whl.metadata (3.1 kB)
Collecting seaborn==0.13.2 (from scenicplus==1.0a1)
Using cached seaborn-0.13.2-py3-none-any.whl.metadata (5.4 kB)
Collecting sinfo==0.3.4 (from scenicplus==1.0a1)
Using cached sinfo-0.3.4-py3-none-any.whl
Collecting six==1.16.0 (from scenicplus==1.0a1)
Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting smart-open==6.4.0 (from scenicplus==1.0a1)
Using cached smart_open-6.4.0-py3-none-any.whl.metadata (21 kB)
Collecting smmap==5.0.1 (from scenicplus==1.0a1)
Using cached smmap-5.0.1-py3-none-any.whl.metadata (4.3 kB)
Collecting snakemake==8.5.5 (from scenicplus==1.0a1)
Using cached snakemake-8.5.5-py3-none-any.whl.metadata (2.5 kB)
Collecting snakemake-interface-common==1.17.1 (from scenicplus==1.0a1)
Using cached snakemake_interface_common-1.17.1-py3-none-any.whl.metadata (760 bytes)
Collecting snakemake-interface-executor-plugins==8.2.0 (from scenicplus==1.0a1)
Using cached snakemake_interface_executor_plugins-8.2.0-py3-none-any.whl.metadata (7.7 kB)
Collecting snakemake-interface-report-plugins==1.0.0 (from scenicplus==1.0a1)
Using cached snakemake_interface_report_plugins-1.0.0-py3-none-any.whl.metadata (3.4 kB)
Collecting snakemake-interface-storage-plugins==3.1.1 (from scenicplus==1.0a1)
Using cached snakemake_interface_storage_plugins-3.1.1-py3-none-any.whl.metadata (9.4 kB)
Collecting sorted-nearest==0.0.39 (from scenicplus==1.0a1)
Using cached sorted_nearest-0.0.39-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (964 bytes)
Collecting sortedcontainers==2.4.0 (from scenicplus==1.0a1)
Using cached sortedcontainers-2.4.0-py2.py3-none-any.whl.metadata (10 kB)
Collecting soupsieve==2.5 (from scenicplus==1.0a1)
Using cached soupsieve-2.5-py3-none-any.whl.metadata (4.7 kB)
Collecting stack-data==0.6.3 (from scenicplus==1.0a1)
Using cached stack_data-0.6.3-py3-none-any.whl.metadata (18 kB)
Collecting statistics==1.0.3.5 (from scenicplus==1.0a1)
Using cached statistics-1.0.3.5-py3-none-any.whl
Collecting statsmodels==0.14.1 (from scenicplus==1.0a1)
Using cached statsmodels-0.14.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.5 kB)
Collecting stdlib-list==0.10.0 (from scenicplus==1.0a1)
Using cached stdlib_list-0.10.0-py3-none-any.whl.metadata (3.3 kB)
Collecting stopit==1.1.2 (from scenicplus==1.0a1)
Using cached stopit-1.1.2-py3-none-any.whl
Collecting suds-community==1.1.2 (from scenicplus==1.0a1)
Using cached suds_community-1.1.2-py3-none-any.whl.metadata (1.7 kB)
Collecting tables==3.9.2 (from scenicplus==1.0a1)
Using cached tables-3.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
Collecting tabulate==0.9.0 (from scenicplus==1.0a1)
Using cached tabulate-0.9.0-py3-none-any.whl.metadata (34 kB)
Collecting tblib==3.0.0 (from scenicplus==1.0a1)
Using cached tblib-3.0.0-py3-none-any.whl.metadata (25 kB)
Collecting tenacity==8.2.3 (from scenicplus==1.0a1)
Using cached tenacity-8.2.3-py3-none-any.whl.metadata (1.0 kB)
Collecting texttable==1.7.0 (from scenicplus==1.0a1)
Using cached texttable-1.7.0-py2.py3-none-any.whl.metadata (9.8 kB)
Collecting threadpoolctl==3.4.0 (from scenicplus==1.0a1)
Using cached threadpoolctl-3.4.0-py3-none-any.whl.metadata (13 kB)
Collecting throttler==1.2.2 (from scenicplus==1.0a1)
Using cached throttler-1.2.2-py3-none-any.whl.metadata (7.4 kB)
Collecting tifffile==2024.2.12 (from scenicplus==1.0a1)
Using cached tifffile-2024.2.12-py3-none-any.whl.metadata (31 kB)
Collecting tmtoolkit==0.12.0 (from scenicplus==1.0a1)
Using cached tmtoolkit-0.12.0-py3-none-any.whl.metadata (14 kB)
Collecting toolz==0.12.1 (from scenicplus==1.0a1)
Using cached toolz-0.12.1-py3-none-any.whl.metadata (5.1 kB)
Collecting toposort==1.10 (from scenicplus==1.0a1)
Using cached toposort-1.10-py3-none-any.whl.metadata (4.1 kB)
Collecting tornado==6.4 (from scenicplus==1.0a1)
Using cached tornado-6.4-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB)
Collecting tqdm==4.66.2 (from scenicplus==1.0a1)
Using cached tqdm-4.66.2-py3-none-any.whl.metadata (57 kB)
Collecting traitlets==5.14.2 (from scenicplus==1.0a1)
Using cached traitlets-5.14.2-py3-none-any.whl.metadata (10 kB)
Collecting tspex==0.6.3 (from scenicplus==1.0a1)
Using cached tspex-0.6.3-py3-none-any.whl
Collecting typing==3.7.4.3 (from scenicplus==1.0a1)
Using cached typing-3.7.4.3-py3-none-any.whl
Collecting typing-extensions==4.10.0 (from scenicplus==1.0a1)
Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB)
Collecting typing-inspect==0.9.0 (from scenicplus==1.0a1)
Using cached typing_inspect-0.9.0-py3-none-any.whl.metadata (1.5 kB)
Collecting umap-learn==0.5.5 (from scenicplus==1.0a1)
Using cached umap_learn-0.5.5-py3-none-any.whl
Collecting url-normalize==1.4.3 (from scenicplus==1.0a1)
Using cached url_normalize-1.4.3-py2.py3-none-any.whl.metadata (3.1 kB)
Collecting urllib3==2.2.1 (from scenicplus==1.0a1)
Using cached urllib3-2.2.1-py3-none-any.whl.metadata (6.4 kB)
Collecting wcwidth==0.2.13 (from scenicplus==1.0a1)
Using cached wcwidth-0.2.13-py2.py3-none-any.whl.metadata (14 kB)
Collecting wheel==0.43.0 (from scenicplus==1.0a1)
Using cached wheel-0.43.0-py3-none-any.whl.metadata (2.2 kB)
Collecting wrapt==1.16.0 (from scenicplus==1.0a1)
Using cached wrapt-1.16.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
Collecting xlrd==2.0.1 (from scenicplus==1.0a1)
Using cached xlrd-2.0.1-py2.py3-none-any.whl.metadata (3.4 kB)
Collecting xmltodict==0.13.0 (from scenicplus==1.0a1)
Using cached xmltodict-0.13.0-py2.py3-none-any.whl.metadata (7.7 kB)
Collecting xyzservices==2023.10.1 (from scenicplus==1.0a1)
Using cached xyzservices-2023.10.1-py3-none-any.whl.metadata (4.0 kB)
Collecting yarl==1.9.4 (from scenicplus==1.0a1)
Using cached yarl-1.9.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (31 kB)
Collecting yte==1.5.4 (from scenicplus==1.0a1)
Using cached yte-1.5.4-py3-none-any.whl.metadata (3.4 kB)
Collecting zict==3.0.0 (from scenicplus==1.0a1)
Using cached zict-3.0.0-py2.py3-none-any.whl.metadata (899 bytes)
Collecting zipp==3.18.1 (from scenicplus==1.0a1)
Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
Collecting zope-event==5.0 (from scenicplus==1.0a1)
Using cached zope.event-5.0-py3-none-any.whl.metadata (4.4 kB)
Collecting zope-interface==6.2 (from scenicplus==1.0a1)
Using cached zope.interface-6.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (41 kB)
Requirement already satisfied: setuptools in /miniconda3/envs/scenicplus_new/lib/python3.11/site-packages (from loompy==3.0.7->scenicplus==1.0a1) (75.6.0)
Using cached adjustText-1.0.4-py3-none-any.whl (11 kB)
Using cached aiohttp-3.9.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.3 MB)
Downloading aiosignal-1.3.1-py3-none-any.whl (7.6 kB)
Using cached anndata-0.10.5.post1-py3-none-any.whl (121 kB)
Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
Using cached arboreto-0.1.6-py2.py3-none-any.whl (15 kB)
Using cached argparse_dataclass-2.0.0-py3-none-any.whl (8.8 kB)
Using cached array_api_compat-1.5.1-py3-none-any.whl (35 kB)
Using cached asttokens-2.4.1-py2.py3-none-any.whl (27 kB)
Using cached attr-0.3.2-py2.py3-none-any.whl (3.3 kB)
Using cached attrs-23.2.0-py3-none-any.whl (60 kB)
Using cached bbknn-1.6.0-py3-none-any.whl (14 kB)
Using cached beautifulsoup4-4.12.3-py3-none-any.whl (147 kB)
Using cached bidict-0.23.1-py3-none-any.whl (32 kB)
Using cached blosc2-2.5.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
Using cached bokeh-3.4.0-py3-none-any.whl (7.0 MB)
Using cached boltons-23.1.1-py2.py3-none-any.whl (195 kB)
Using cached bs4-0.0.2-py2.py3-none-any.whl (1.2 kB)
Using cached cattrs-23.2.3-py3-none-any.whl (57 kB)
Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
Using cached charset_normalizer-3.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (140 kB)
Using cached click-8.1.7-py3-none-any.whl (97 kB)
Using cached cloudpickle-3.0.0-py3-none-any.whl (20 kB)
Using cached colorama-0.4.6-py2.py3-none-any.whl (25 kB)
Using cached colorlog-6.8.2-py3-none-any.whl (11 kB)
Using cached conda_inject-1.3.1-py3-none-any.whl (4.1 kB)
Using cached ConfigArgParse-1.7-py3-none-any.whl (25 kB)
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Using cached ctxcore-0.2.0-py3-none-any.whl (5.8 MB)
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
Using cached Cython-0.29.37-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (1.9 MB)
Using cached cytoolz-0.12.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
Using cached dask-2024.2.1-py3-none-any.whl (1.2 MB)
Using cached dataclasses_json-0.6.4-py3-none-any.whl (28 kB)
Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB)
Using cached dill-0.3.8-py3-none-any.whl (116 kB)
Using cached distributed-2024.2.1-py3-none-any.whl (1.0 MB)
Using cached docutils-0.20.1-py3-none-any.whl (572 kB)
Using cached dpath-2.1.6-py3-none-any.whl (17 kB)
Using cached easydev-0.13.1-py3-none-any.whl (56 kB)
Using cached et_xmlfile-1.1.0-py3-none-any.whl (4.7 kB)
Using cached executing-2.0.1-py2.py3-none-any.whl (24 kB)
Using cached fastjsonschema-2.19.1-py3-none-any.whl (23 kB)
Using cached filelock-3.13.1-py3-none-any.whl (11 kB)
Using cached fonttools-4.50.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.9 MB)
Using cached frozenlist-1.4.1-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (272 kB)
Using cached fsspec-2024.3.1-py3-none-any.whl (171 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached gensim-4.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (26.7 MB)
Using cached geosketch-1.2-py3-none-any.whl (8.2 kB)
Using cached gevent-24.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (6.7 MB)
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Building wheels for collected packages: scenicplus, loomxpy, pyscenic, pycistarget, pycistopic
Building wheel for scenicplus (pyproject.toml) ... error
error: subprocess-exited-with-error

× Building wheel for scenicplus (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [125 lines of output]
running bdist_wheel
running build
running build_py
creating build/lib/scenicplus
copying src/scenicplus/networks.py -> build/lib/scenicplus
copying src/scenicplus/triplet_score.py -> build/lib/scenicplus
copying src/scenicplus/differentiation_potential.py -> build/lib/scenicplus
copying src/scenicplus/RSS.py -> build/lib/scenicplus
copying src/scenicplus/simulation.py -> build/lib/scenicplus
copying src/scenicplus/scenicplus_class.py -> build/lib/scenicplus
copying src/scenicplus/BASCA.py -> build/lib/scenicplus
copying src/scenicplus/TF_to_gene.py -> build/lib/scenicplus
copying src/scenicplus/scenicplus_mudata.py -> build/lib/scenicplus
copying src/scenicplus/utils.py -> build/lib/scenicplus
copying src/scenicplus/init.py -> build/lib/scenicplus
copying src/scenicplus/enhancer_to_gene.py -> build/lib/scenicplus
copying src/scenicplus/loom.py -> build/lib/scenicplus
copying src/scenicplus/eregulon_enrichment.py -> build/lib/scenicplus
creating build/lib/scenicplus/wrappers
copying src/scenicplus/wrappers/init.py -> build/lib/scenicplus/wrappers
copying src/scenicplus/wrappers/run_pycistarget.py -> build/lib/scenicplus/wrappers
creating build/lib/scenicplus/plotting
copying src/scenicplus/plotting/grn_plot.py -> build/lib/scenicplus/plotting
copying src/scenicplus/plotting/coverageplot.py -> build/lib/scenicplus/plotting
copying src/scenicplus/plotting/correlation_plot.py -> build/lib/scenicplus/plotting
copying src/scenicplus/plotting/init.py -> build/lib/scenicplus/plotting
copying src/scenicplus/plotting/dotplot.py -> build/lib/scenicplus/plotting
creating build/lib/scenicplus/cli
copying src/scenicplus/cli/gfx.py -> build/lib/scenicplus/cli
copying src/scenicplus/cli/commands.py -> build/lib/scenicplus/cli
copying src/scenicplus/cli/init.py -> build/lib/scenicplus/cli
copying src/scenicplus/cli/scenicplus.py -> build/lib/scenicplus/cli
creating build/lib/scenicplus/regulon_qc
copying src/scenicplus/regulon_qc/quality_metrics.py -> build/lib/scenicplus/regulon_qc
copying src/scenicplus/regulon_qc/init.py -> build/lib/scenicplus/regulon_qc
creating build/lib/scenicplus/data_wrangling
copying src/scenicplus/data_wrangling/cistarget_wrangling.py -> build/lib/scenicplus/data_wrangling
copying src/scenicplus/data_wrangling/adata_cistopic_wrangling.py -> build/lib/scenicplus/data_wrangling
copying src/scenicplus/data_wrangling/gene_search_space.py -> build/lib/scenicplus/data_wrangling
copying src/scenicplus/data_wrangling/init.py -> build/lib/scenicplus/data_wrangling
creating build/lib/scenicplus/tangram
copying src/scenicplus/tangram/utils.py -> build/lib/scenicplus/tangram
copying src/scenicplus/tangram/init.py -> build/lib/scenicplus/tangram
copying src/scenicplus/tangram/projections.py -> build/lib/scenicplus/tangram
creating build/lib/scenicplus/preprocessing
copying src/scenicplus/preprocessing/init.py -> build/lib/scenicplus/preprocessing
copying src/scenicplus/preprocessing/filtering.py -> build/lib/scenicplus/preprocessing
creating build/lib/scenicplus/snakemake
copying src/scenicplus/snakemake/init.py -> build/lib/scenicplus/snakemake
creating build/lib/scenicplus/grn_builder
copying src/scenicplus/grn_builder/gsea.py -> build/lib/scenicplus/grn_builder
copying src/scenicplus/grn_builder/modules.py -> build/lib/scenicplus/grn_builder
copying src/scenicplus/grn_builder/init.py -> build/lib/scenicplus/grn_builder
copying src/scenicplus/grn_builder/gsea_approach.py -> build/lib/scenicplus/grn_builder
running egg_info
writing src/scenicplus.egg-info/PKG-INFO
writing dependency_links to src/scenicplus.egg-info/dependency_links.txt
writing entry points to src/scenicplus.egg-info/entry_points.txt
writing requirements to src/scenicplus.egg-info/requires.txt
writing top-level names to src/scenicplus.egg-info/top_level.txt
adding license file 'LICENCE.txt'
writing manifest file 'src/scenicplus.egg-info/SOURCES.txt'
copying src/scenicplus/snakemake/Snakefile -> build/lib/scenicplus/snakemake
copying src/scenicplus/snakemake/config.yaml -> build/lib/scenicplus/snakemake
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/scenicplus
copying build/lib/scenicplus/networks.py -> build/bdist.linux-x86_64/wheel/./scenicplus
creating build/bdist.linux-x86_64/wheel/scenicplus/wrappers
copying build/lib/scenicplus/wrappers/init.py -> build/bdist.linux-x86_64/wheel/./scenicplus/wrappers
copying build/lib/scenicplus/wrappers/run_pycistarget.py -> build/bdist.linux-x86_64/wheel/./scenicplus/wrappers
copying build/lib/scenicplus/triplet_score.py -> build/bdist.linux-x86_64/wheel/./scenicplus
copying build/lib/scenicplus/differentiation_potential.py -> build/bdist.linux-x86_64/wheel/./scenicplus
copying build/lib/scenicplus/RSS.py -> build/bdist.linux-x86_64/wheel/./scenicplus
copying build/lib/scenicplus/simulation.py -> build/bdist.linux-x86_64/wheel/./scenicplus
creating build/bdist.linux-x86_64/wheel/scenicplus/plotting
copying build/lib/scenicplus/plotting/grn_plot.py -> build/bdist.linux-x86_64/wheel/./scenicplus/plotting
copying build/lib/scenicplus/plotting/coverageplot.py -> build/bdist.linux-x86_64/wheel/./scenicplus/plotting
copying build/lib/scenicplus/plotting/correlation_plot.py -> build/bdist.linux-x86_64/wheel/./scenicplus/plotting
copying build/lib/scenicplus/plotting/init.py -> build/bdist.linux-x86_64/wheel/./scenicplus/plotting
copying build/lib/scenicplus/plotting/dotplot.py -> build/bdist.linux-x86_64/wheel/./scenicplus/plotting
copying build/lib/scenicplus/scenicplus_class.py -> build/bdist.linux-x86_64/wheel/./scenicplus
creating build/bdist.linux-x86_64/wheel/scenicplus/cli
copying build/lib/scenicplus/cli/gfx.py -> build/bdist.linux-x86_64/wheel/./scenicplus/cli
copying build/lib/scenicplus/cli/commands.py -> build/bdist.linux-x86_64/wheel/./scenicplus/cli
copying build/lib/scenicplus/cli/init.py -> build/bdist.linux-x86_64/wheel/./scenicplus/cli
copying build/lib/scenicplus/cli/scenicplus.py -> build/bdist.linux-x86_64/wheel/./scenicplus/cli
copying build/lib/scenicplus/BASCA.py -> build/bdist.linux-x86_64/wheel/./scenicplus
copying build/lib/scenicplus/TF_to_gene.py -> build/bdist.linux-x86_64/wheel/./scenicplus
creating build/bdist.linux-x86_64/wheel/scenicplus/regulon_qc
copying build/lib/scenicplus/regulon_qc/quality_metrics.py -> build/bdist.linux-x86_64/wheel/./scenicplus/regulon_qc
copying build/lib/scenicplus/regulon_qc/init.py -> build/bdist.linux-x86_64/wheel/./scenicplus/regulon_qc
creating build/bdist.linux-x86_64/wheel/scenicplus/data_wrangling
copying build/lib/scenicplus/data_wrangling/cistarget_wrangling.py -> build/bdist.linux-x86_64/wheel/./scenicplus/data_wrangling
copying build/lib/scenicplus/data_wrangling/adata_cistopic_wrangling.py -> build/bdist.linux-x86_64/wheel/./scenicplus/data_wrangling
copying build/lib/scenicplus/data_wrangling/gene_search_space.py -> build/bdist.linux-x86_64/wheel/./scenicplus/data_wrangling
copying build/lib/scenicplus/data_wrangling/init.py -> build/bdist.linux-x86_64/wheel/./scenicplus/data_wrangling
creating build/bdist.linux-x86_64/wheel/scenicplus/tangram
copying build/lib/scenicplus/tangram/utils.py -> build/bdist.linux-x86_64/wheel/./scenicplus/tangram
copying build/lib/scenicplus/tangram/init.py -> build/bdist.linux-x86_64/wheel/./scenicplus/tangram
copying build/lib/scenicplus/tangram/projections.py -> build/bdist.linux-x86_64/wheel/./scenicplus/tangram
creating build/bdist.linux-x86_64/wheel/scenicplus/preprocessing
copying build/lib/scenicplus/preprocessing/init.py -> build/bdist.linux-x86_64/wheel/./scenicplus/preprocessing
copying build/lib/scenicplus/preprocessing/filtering.py -> build/bdist.linux-x86_64/wheel/./scenicplus/preprocessing
copying build/lib/scenicplus/scenicplus_mudata.py -> build/bdist.linux-x86_64/wheel/./scenicplus
copying build/lib/scenicplus/utils.py -> build/bdist.linux-x86_64/wheel/./scenicplus
copying build/lib/scenicplus/init.py -> build/bdist.linux-x86_64/wheel/./scenicplus
creating build/bdist.linux-x86_64/wheel/scenicplus/snakemake
copying build/lib/scenicplus/snakemake/config.yaml -> build/bdist.linux-x86_64/wheel/./scenicplus/snakemake
copying build/lib/scenicplus/snakemake/Snakefile -> build/bdist.linux-x86_64/wheel/./scenicplus/snakemake
copying build/lib/scenicplus/snakemake/init.py -> build/bdist.linux-x86_64/wheel/./scenicplus/snakemake
creating build/bdist.linux-x86_64/wheel/scenicplus/grn_builder
copying build/lib/scenicplus/grn_builder/gsea.py -> build/bdist.linux-x86_64/wheel/./scenicplus/grn_builder
copying build/lib/scenicplus/grn_builder/modules.py -> build/bdist.linux-x86_64/wheel/./scenicplus/grn_builder
copying build/lib/scenicplus/grn_builder/init.py -> build/bdist.linux-x86_64/wheel/./scenicplus/grn_builder
copying build/lib/scenicplus/grn_builder/gsea_approach.py -> build/bdist.linux-x86_64/wheel/./scenicplus/grn_builder
copying build/lib/scenicplus/enhancer_to_gene.py -> build/bdist.linux-x86_64/wheel/./scenicplus
copying build/lib/scenicplus/loom.py -> build/bdist.linux-x86_64/wheel/./scenicplus
copying build/lib/scenicplus/eregulon_enrichment.py -> build/bdist.linux-x86_64/wheel/./scenicplus
running install_egg_info
Copying src/scenicplus.egg-info to build/bdist.linux-x86_64/wheel/./scenicplus-1.0a1-py3.11.egg-info
running install_scripts
error: [Errno 13] Permission denied: 'SOURCES.txt'
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for scenicplus
Building wheel for loomxpy (pyproject.toml) ... done
Created wheel for loomxpy: filename=loomxpy-0.4.2-py3-none-any.whl size=28486 sha256=1c540a867e0ee0425c035610fdcc9961a0bb2da46af5c278b38d2e3645ad4958
Stored in directory: /tmp/pip-ephem-wheel-cache-ggdov374/wheels/7a/3a/8a/21d26a485464c1c66d81da84ae8c8536ebf9629f2d4ec480da
Building wheel for pyscenic (setup.py) ... done
Created wheel for pyscenic: filename=pyscenic-0.12.1+8.gd2309fe-py3-none-any.whl size=7100117 sha256=704ef8b6f235ca5ddcbe2e86e733ac28af7dd78b074f5da617725f04c6f3bc32
Stored in directory: /tmp/pip-ephem-wheel-cache-ggdov374/wheels/34/b0/cc/4961f5e29900a4e897551d3390658f02f1f34d13813d49b852
Building wheel for pycistarget (pyproject.toml) ... done
Created wheel for pycistarget: filename=pycistarget-1.0a2-py3-none-any.whl size=29092 sha256=615dc310a6f6c4f379189485fdb00fc63598291a5a3a9d2c1f22aceb554c9ad9
Stored in directory: /tmp/pip-ephem-wheel-cache-ggdov374/wheels/9e/f3/f1/783c17fdf05516179f2f66a088ea6b41ab2c7d8afe8e40e090
Building wheel for pycistopic (pyproject.toml) ... done
Created wheel for pycistopic: filename=pycisTopic-2.0a0-py3-none-any.whl size=125401 sha256=4810bb8b540a79eddc364e2400e2beb97f4681bea0fc34775a06d3eccc983758
Stored in directory: /tmp/pip-ephem-wheel-cache-ggdov374/wheels/c1/c7/24/a73f70fa0e8797e75a8feaad32c6ad3730d8ca2b6809158ca0
Successfully built loomxpy pyscenic pycistarget pycistopic
Failed to build scenicplus
ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (scenicplus)

[Melody-cell]

I have the same problem.
Did anyone know how to solve it