Documentation Link Broken in FAQs 2

[ziquangan]

I am currently working on a project involving scATAC-seq data, which has been annotated with cell types using ArchR. I am interested in further analyzing this data using pycisTopic/SCENIC+. While reviewing the FAQs on your documentation page, specifically the section on integrating scATAC-seq data analyzed with tools like Signac/ArchR with pycisTopic/SCENIC+ (Question 2), I encountered an issue. The FAQ suggests that one can directly start with the creation of a cisTopic object if the QC steps and fragment count matrix are already prepared using another tool. However, the hyperlink that should lead to the tutorial within the answer is broken. This link redirects to a "404 Documentation page not found," which prevents me from accessing the detailed code instructions needed to proceed.

I had expected the link to direct me to a tutorial page where I could find example code on how to use pycisTopic/SCENIC+ after initial data processing with tools like Signac/ArchR.

It would be greatly appreciated if the documentation could be updated or if an alternative resource could be provided. Thank you for your assistance.

[SeppeDeWinter]

Hi @ziquangan

You can still find this tutorial here: https://github.com/aertslab/pycisTopic/blob/old/notebooks/Toy_melanoma-RTD.ipynb

Best,

Seppe