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'export_pseudobulk' output difference log #172

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GGboy-Zzz opened this issue Sep 23, 2024 · 1 comment
Open

'export_pseudobulk' output difference log #172

GGboy-Zzz opened this issue Sep 23, 2024 · 1 comment

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@GGboy-Zzz
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Hi,
I processed a batch of scATACseq data using pycistopic last year, at that time, the export_pseudobulk output in the juypter lab is as follows,
image
yet, When I was using pycistopic recently, the export_pseudobulk output changed to
image
Both generated pseudobulk bed files for each cell type. I'm confused about its change, because I dont update it. So, I would like to ask if this output is normal?Thanks for your reply.

@ghuls
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ghuls commented Oct 1, 2024

The implementation of export_pseudobulk was rewritten to be faster, hence the slightly different logging lines.

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