_pkgdown.yml

url: https://www.open-systems-pharmacology.org/TLF-Library/

template:
  bootstrap: 5

development:
  mode: devel

reference:
- title: "Atom Plots"
  desc: "Functions for creating base plots"
  contents:
  - has_concept("atom plots")
- title: "Molecule Plots"
  desc: "Functions for creating advanced plots"
  contents:
  - has_concept("molecule plots")
- title: "Updating Plots"
  desc: "Functions for updating plot properties"
  contents:
  - starts_with("setBackground")
  - starts_with("setCaption")
  - starts_with("setLegend")
  - starts_with("setPlot")
  - starts_with("setX")
  - starts_with("setY")
  - matches("setGrid")
  - matches("addWatermark")
  - matches("createWatermarkGrob")
  - matches("setWatermark")
  - starts_with("update")
  - starts_with("get")
- title: "PlotConfiguration Classes"
  desc: "Classes defining plot properties"
  contents:
  - has_concept("PlotConfiguration classes")
  - ends_with("Label")
  - matches("Font")
- title: "DataMapping Classes"
  desc: "Classes defining what data to plot"
  contents:
  - has_concept("DataMapping classes")
  - matches("getLinesFromFoldDistance")
- title: "Summary and Aggregation Helpers"
  desc: "Classes, functions and objects summarizing data"
  contents:
  - has_concept("stat functions")
  - starts_with("Aggregation")
  - ends_with("Measure")
  - matches("isBetween")
  - starts_with("getGuestValues")
- title: "Enum Helpers"
  desc: "Enums listing available values for specific properties"
  contents:
  - has_concept("enum helpers")
- title: "Shiny Apps"
  desc: "Shiny applications"
  contents:
  - has_concept("shiny apps")
- title: "Themes"
  desc: "Functions and classes defining default plot properties."
  contents:
  - ends_with("Theme")
  - starts_with("Theme")
  - matches("saveThemeToJson")
  - matches("loadThemeFromJson")
  - matches("runThemeMaker")
- title: "Default Settings"
  desc: "Functions defining default package settings."
  contents:
  - starts_with("setDefault")
  - starts_with("getDefault")
- title: "Exporting Plots"
  desc: "Functions for saving and exporting plots."
  contents:
  - starts_with("export")

articles:

  - title: Primary plots
    contents:
    - atom-plots
    - box-whisker-vignette
    - histogram
    - pk-ratio-vignette
    - plot-time-profile

  - title: Plot configuration
    contents:
    - plot-configuration

  - title: Shiny apps
    contents:
    - plot-maker
    - theme-maker