diff --git a/.github/workflows/python-package-conda.yml b/.github/workflows/python-package-conda.yml index f8cfd11..78dc25d 100644 --- a/.github/workflows/python-package-conda.yml +++ b/.github/workflows/python-package-conda.yml @@ -14,9 +14,9 @@ jobs: steps: - uses: actions/checkout@v4 - name: Check out Repo - # uses: actions/setup-python@v5 - # with: - # python-version: 3.9 + uses: actions/setup-python@v5 + with: + python-version: 3.9.19 # - name: Install dependencies # run: | # # $CONDA is an environment variable pointing to the root of the miniconda directory @@ -32,16 +32,13 @@ jobs: # $CONDA/bin/conda info --base # $CONDA/bin/conda info --envs # #CONDA_PREFIX=/usr/share/miniconda/envs/testenv - - name: Initiate conda channels uses: conda-incubator/setup-miniconda@v3 with: channels: conda-forge,bioconda,default # activate-environment: testenv auto-activate-base: true - - - - name: Set up environment + - name: Set up QIIME Conda environment run: | ls pwd @@ -55,7 +52,6 @@ jobs: pip install pyzstd pip install pytest pip install . - - name: Test with pytest run: | conda activate activate testenv