- concept recognition pipeline refresh
- updates based on comprehensive error analysis and updated ontologies
- incorporation of abbreviation information
- various pipeline fixes
- incorporated pipelines for creating input files for the Turku dependency parsing code (to be run via docker via AI-platform) and pipelines to parse the Turku dependency output and store the results in cloud datastore
- also added Dockerfile for running the Turku English dependency parser on AI-platform
- updates to publication metadata code
- export of months and days is now more standardized
- months are exported as their 3-letter abbreviation
- days are exported a 2-digit strings, e.g. 03
- there is now a dedicated airflow pipeline for keeping the pub metadata api up-to-date
- export of months and days is now more standardized
- updates to handling of embedded HTML tags in the title and abstract text of Medline records
- adjusted treatment of whitespace around HTML tags
- added annotations for sub/sup tags to the
sectionsdocument for each PMID
- this version represents all development through March 2023