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Rpackages.bib
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@Manual{utils,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2022},
url = {https://www.R-project.org/},
}
@Manual{matrixStats,
title = {matrixStats: Functions that Apply to Rows and Columns of Matrices (and to
Vectors)},
author = {Henrik Bengtsson},
year = {2022},
note = {R package version 0.62.0},
url = {https://CRAN.R-project.org/package=matrixStats},
}
@Manual{fontawesome,
title = {fontawesome: Easily Work with 'Font Awesome' Icons},
author = {Richard Iannone},
year = {2022},
note = {R package version 0.3.0},
url = {https://CRAN.R-project.org/package=fontawesome},
}
@Article{lubridate,
title = {Dates and Times Made Easy with {lubridate}},
author = {Garrett Grolemund and Hadley Wickham},
journal = {Journal of Statistical Software},
year = {2011},
volume = {40},
number = {3},
pages = {1--25},
url = {https://www.jstatsoft.org/v40/i03/},
}
@Manual{httr,
title = {httr: Tools for Working with URLs and HTTP},
author = {Hadley Wickham},
year = {2022},
note = {R package version 1.4.4},
url = {https://CRAN.R-project.org/package=httr},
}
@Misc{rstan,
title = {{RStan}: the {R} interface to {Stan}},
author = {{Stan Development Team}},
note = {R package version 2.21.7},
year = {2022},
url = {https://mc-stan.org/},
}
@Manual{bslib,
title = {bslib: Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'},
author = {Carson Sievert and Joe Cheng},
year = {2022},
note = {R package version 0.4.0},
url = {https://CRAN.R-project.org/package=bslib},
}
@Manual{tools,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2022},
url = {https://www.R-project.org/},
}
@Manual{backports,
title = {backports: Reimplementations of Functions Introduced Since R-3.0.0},
author = {Michel Lang and {R Core Team}},
year = {2021},
note = {R package version 1.4.1},
url = {https://CRAN.R-project.org/package=backports},
}
@Manual{utf8,
title = {utf8: Unicode Text Processing},
author = {Patrick O. Perry},
year = {2021},
note = {R package version 1.2.2},
url = {https://CRAN.R-project.org/package=utf8},
}
@Manual{R6,
title = {R6: Encapsulated Classes with Reference Semantics},
author = {Winston Chang},
year = {2021},
note = {R package version 2.5.1},
url = {https://CRAN.R-project.org/package=R6},
}
@Manual{DT,
title = {DT: A Wrapper of the JavaScript Library 'DataTables'},
author = {Yihui Xie and Joe Cheng and Xianying Tan},
year = {2022},
note = {R package version 0.25},
url = {https://CRAN.R-project.org/package=DT},
}
@Manual{DBI,
title = {DBI: R Database Interface},
author = {{R Special Interest Group on Databases (R-SIG-DB)} and Hadley Wickham and Kirill Müller},
year = {2022},
note = {R package version 1.1.3},
url = {https://CRAN.R-project.org/package=DBI},
}
@Manual{lazyeval,
title = {lazyeval: Lazy (Non-Standard) Evaluation},
author = {Hadley Wickham},
year = {2019},
note = {R package version 0.2.2},
url = {https://CRAN.R-project.org/package=lazyeval},
}
@Article{colorspace1,
title = {{colorspace}: A Toolbox for Manipulating and Assessing Colors and Palettes},
author = {Achim Zeileis and Jason C. Fisher and Kurt Hornik and Ross Ihaka and Claire D. McWhite and Paul Murrell and Reto Stauffer and Claus O. Wilke},
journal = {Journal of Statistical Software},
year = {2020},
volume = {96},
number = {1},
pages = {1--49},
doi = {10.18637/jss.v096.i01},
}
@Article{colorspace2,
title = {Escaping {RGB}land: Selecting Colors for Statistical Graphics},
author = {Achim Zeileis and Kurt Hornik and Paul Murrell},
journal = {Computational Statistics \& Data Analysis},
year = {2009},
volume = {53},
number = {9},
pages = {3259--3270},
doi = {10.1016/j.csda.2008.11.033},
}
@Article{colorspace3,
title = {Somewhere over the Rainbow: How to Make Effective Use of Colors in Meteorological Visualizations},
author = {Reto Stauffer and Georg J. Mayr and Markus Dabernig and Achim Zeileis},
journal = {Bulletin of the American Meteorological Society},
year = {2009},
volume = {96},
number = {2},
pages = {203--216},
doi = {10.1175/BAMS-D-13-00155.1},
}
@Manual{withr,
title = {withr: Run Code 'With' Temporarily Modified Global State},
author = {Jim Hester and Lionel Henry and Kirill Müller and Kevin Ushey and Hadley Wickham and Winston Chang},
year = {2022},
note = {R package version 2.5.0},
url = {https://CRAN.R-project.org/package=withr},
}
@Manual{tidyselect,
title = {tidyselect: Select from a Set of Strings},
author = {Lionel Henry and Hadley Wickham},
year = {2022},
note = {R package version 1.1.2},
url = {https://CRAN.R-project.org/package=tidyselect},
}
@Manual{gridExtra,
title = {gridExtra: Miscellaneous Functions for "Grid" Graphics},
author = {Baptiste Auguie},
year = {2017},
note = {R package version 2.3},
url = {https://CRAN.R-project.org/package=gridExtra},
}
@Manual{prettyunits,
title = {prettyunits: Pretty, Human Readable Formatting of Quantities},
author = {Gabor Csardi},
year = {2020},
note = {R package version 1.1.1},
url = {https://CRAN.R-project.org/package=prettyunits},
}
@Manual{processx,
title = {processx: Execute and Control System Processes},
author = {Gábor Csárdi and Winston Chang},
year = {2022},
note = {R package version 3.7.0},
url = {https://CRAN.R-project.org/package=processx},
}
@Manual{compiler,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2022},
url = {https://www.R-project.org/},
}
@Manual{cli,
title = {cli: Helpers for Developing Command Line Interfaces},
author = {Gábor Csárdi},
year = {2022},
note = {R package version 3.4.1},
url = {https://CRAN.R-project.org/package=cli},
}
@Manual{datasets,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2022},
url = {https://www.R-project.org/},
}
@Manual{xml2,
title = {xml2: Parse XML},
author = {Hadley Wickham and Jim Hester and Jeroen Ooms},
year = {2021},
note = {R package version 1.3.3},
url = {https://CRAN.R-project.org/package=xml2},
}
@Manual{humaniformat,
title = {humaniformat: A Parser for Human Names},
author = {Oliver Keyes},
year = {2016},
note = {R package version 0.6.0},
url = {https://CRAN.R-project.org/package=humaniformat},
}
@Book{plotly,
author = {Carson Sievert},
title = {Interactive Web-Based Data Visualization with R, plotly, and shiny},
publisher = {Chapman and Hall/CRC},
year = {2020},
isbn = {9781138331457},
url = {https://plotly-r.com},
}
@Manual{sass,
title = {sass: Syntactically Awesome Style Sheets ('Sass')},
author = {Joe Cheng and Timothy Mastny and Richard Iannone and Barret Schloerke and Carson Sievert},
year = {2022},
note = {R package version 0.4.2},
url = {https://CRAN.R-project.org/package=sass},
}
@Manual{base,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2022},
url = {https://www.R-project.org/},
}
@Article{checkmate,
title = {{checkmate}: Fast Argument Checks for Defensive {R} Programming},
author = {Michel Lang},
journal = {The R Journal},
year = {2017},
doi = {10.32614/RJ-2017-028},
pages = {437--445},
volume = {9},
number = {1},
}
@Manual{scales,
title = {scales: Scale Functions for Visualization},
author = {Hadley Wickham and Dana Seidel},
year = {2022},
note = {R package version 1.2.1},
url = {https://CRAN.R-project.org/package=scales},
}
@Manual{ggridges,
title = {ggridges: Ridgeline Plots in 'ggplot2'},
author = {Claus O. Wilke},
year = {2021},
note = {R package version 0.5.3},
url = {https://CRAN.R-project.org/package=ggridges},
}
@Manual{callr,
title = {callr: Call R from R},
author = {Gábor Csárdi and Winston Chang},
year = {2022},
note = {R package version 3.7.2},
url = {https://CRAN.R-project.org/package=callr},
}
@Manual{stringr,
title = {stringr: Simple, Consistent Wrappers for Common String Operations},
author = {Hadley Wickham},
year = {2022},
note = {R package version 1.4.1},
url = {https://CRAN.R-project.org/package=stringr},
}
@Manual{digest,
title = {digest: Create Compact Hash Digests of R Objects},
author = {Dirk Eddelbuettel with contributions by Antoine Lucas and Jarek Tuszynski and Henrik Bengtsson and Simon Urbanek and Mario Frasca and Bryan Lewis and Murray Stokely and Hannes Muehleisen and Duncan Murdoch and Jim Hester and Wush Wu and Qiang Kou and Thierry Onkelinx and Michel Lang and Viliam Simko and Kurt Hornik and Radford Neal and Kendon Bell and Matthew {de Queljoe} and Ion Suruceanu and Bill Denney and Dirk Schumacher and and Winston Chang.},
year = {2021},
note = {R package version 0.6.29},
url = {https://CRAN.R-project.org/package=digest},
}
@Misc{StanHeaders,
title = {{StanHeaders}: Headers for the {R} interface to {Stan}},
author = {{Stan Development Team}},
note = {R package version 2.21.0-6},
year = {2020},
url = {https://mc-stan.org/},
}
@Manual{shinydashboardPlus,
title = {shinydashboardPlus: Add More 'AdminLTE2' Components to 'shinydashboard'},
author = {David Granjon},
year = {2021},
note = {R package version 2.0.3},
url = {https://CRAN.R-project.org/package=shinydashboardPlus},
}
@Manual{shinyBS,
title = {shinyBS: Twitter Bootstrap Components for Shiny},
author = {Eric Bailey},
year = {2022},
note = {R package version 0.61.1},
url = {https://CRAN.R-project.org/package=shinyBS},
}
@Manual{rmarkdown1,
title = {rmarkdown: Dynamic Documents for R},
author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
year = {2022},
note = {R package version 2.16},
url = {https://github.com/rstudio/rmarkdown},
}
@Book{rmarkdown2,
title = {R Markdown: The Definitive Guide},
author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2018},
note = {ISBN 9781138359338},
url = {https://bookdown.org/yihui/rmarkdown},
}
@Book{rmarkdown3,
title = {R Markdown Cookbook},
author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2020},
note = {ISBN 9780367563837},
url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}
@Manual{dashboardthemes,
title = {dashboardthemes: Customise the Appearance of 'shinydashboard' Applications using
Themes},
author = {Nik Lilovski},
year = {2022},
note = {R package version 1.1.6},
url = {https://CRAN.R-project.org/package=dashboardthemes},
}
@Manual{pkgconfig,
title = {pkgconfig: Private Configuration for 'R' Packages},
author = {Gábor Csárdi},
year = {2019},
note = {R package version 2.0.3},
url = {https://CRAN.R-project.org/package=pkgconfig},
}
@Manual{htmltools,
title = {htmltools: Tools for HTML},
author = {Joe Cheng and Carson Sievert and Barret Schloerke and Winston Chang and Yihui Xie and Jeff Allen},
year = {2021},
note = {R package version 0.5.2},
url = {https://CRAN.R-project.org/package=htmltools},
}
@Manual{bibtex,
title = {bibtex: Bibtex Parser},
author = {Romain Francois},
year = {2020},
note = {R package version 0.4.2.3},
url = {https://CRAN.R-project.org/package=bibtex},
}
@Manual{fastmap,
title = {fastmap: Fast Data Structures},
author = {Winston Chang},
year = {2021},
note = {R package version 1.1.0},
url = {https://CRAN.R-project.org/package=fastmap},
}
@Manual{grDevices,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2022},
url = {https://www.R-project.org/},
}
@Manual{htmlwidgets,
title = {htmlwidgets: HTML Widgets for R},
author = {Ramnath Vaidyanathan and Yihui Xie and JJ Allaire and Joe Cheng and Carson Sievert and Kenton Russell},
year = {2021},
note = {R package version 1.5.4},
url = {https://CRAN.R-project.org/package=htmlwidgets},
}
@Manual{rlang,
title = {rlang: Functions for Base Types and Core R and 'Tidyverse' Features},
author = {Lionel Henry and Hadley Wickham},
year = {2022},
note = {R package version 1.0.6},
url = {https://CRAN.R-project.org/package=rlang},
}
@Manual{readxl,
title = {readxl: Read Excel Files},
author = {Hadley Wickham and Jennifer Bryan},
year = {2022},
note = {R package version 1.4.1},
url = {https://CRAN.R-project.org/package=readxl},
}
@Manual{rstudioapi,
title = {rstudioapi: Safely Access the RStudio API},
author = {Kevin Ushey and JJ Allaire and Hadley Wickham and Gary Ritchie},
year = {2022},
note = {R package version 0.14},
url = {https://CRAN.R-project.org/package=rstudioapi},
}
@Manual{shiny,
title = {shiny: Web Application Framework for R},
author = {Winston Chang and Joe Cheng and JJ Allaire and Carson Sievert and Barret Schloerke and Yihui Xie and Jeff Allen and Jonathan McPherson and Alan Dipert and Barbara Borges},
year = {2022},
note = {R package version 1.7.2},
url = {https://CRAN.R-project.org/package=shiny},
}
@Manual{farver,
title = {farver: High Performance Colour Space Manipulation},
author = {Thomas Lin Pedersen and Berendea Nicolae and Romain François},
year = {2022},
note = {R package version 2.1.1},
url = {https://CRAN.R-project.org/package=farver},
}
@Manual{jquerylib,
title = {jquerylib: Obtain 'jQuery' as an HTML Dependency Object},
author = {Carson Sievert and Joe Cheng},
year = {2021},
note = {R package version 0.1.4},
url = {https://CRAN.R-project.org/package=jquerylib},
}
@Manual{generics,
title = {generics: Common S3 Generics not Provided by Base R Methods Related to
Model Fitting},
author = {Hadley Wickham and Max Kuhn and Davis Vaughan},
year = {2022},
note = {R package version 0.1.3},
url = {https://CRAN.R-project.org/package=generics},
}
@Article{jsonlite,
title = {The jsonlite Package: A Practical and Consistent Mapping Between JSON Data and R Objects},
author = {Jeroen Ooms},
journal = {arXiv:1403.2805 [stat.CO]},
year = {2014},
url = {https://arxiv.org/abs/1403.2805},
}
@Manual{crosstalk,
title = {crosstalk: Inter-Widget Interactivity for HTML Widgets},
author = {Joe Cheng and Carson Sievert},
year = {2021},
note = {R package version 1.2.0},
url = {https://CRAN.R-project.org/package=crosstalk},
}
@Manual{dplyr,
title = {dplyr: A Grammar of Data Manipulation},
author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller},
year = {2022},
note = {R package version 1.0.10},
url = {https://CRAN.R-project.org/package=dplyr},
}
@Manual{zip,
title = {zip: Cross-Platform 'zip' Compression},
author = {Gábor Csárdi and Kuba Podgórski and Rich Geldreich},
year = {2021},
note = {R package version 2.2.0},
url = {https://CRAN.R-project.org/package=zip},
}
@Book{car,
title = {An {R} Companion to Applied Regression},
edition = {Third},
author = {John Fox and Sanford Weisberg},
year = {2019},
publisher = {Sage},
address = {Thousand Oaks {CA}},
url = {https://socialsciences.mcmaster.ca/jfox/Books/Companion/},
}
@Manual{inline,
title = {inline: Functions to Inline C, C++, Fortran Function Calls from R},
author = {Oleg Sklyar and Duncan Murdoch and Mike Smith and Dirk Eddelbuettel and Romain Francois and Karline Soetaert and Johannes Ranke},
year = {2021},
note = {R package version 0.3.19},
url = {https://CRAN.R-project.org/package=inline},
}
@Manual{magrittr,
title = {magrittr: A Forward-Pipe Operator for R},
author = {Stefan Milton Bache and Hadley Wickham},
year = {2022},
note = {R package version 2.0.3},
url = {https://CRAN.R-project.org/package=magrittr},
}
@Misc{loo1,
title = {loo: Efficient leave-one-out cross-validation and WAIC for Bayesian models},
author = {Aki Vehtari and Jonah Gabry and Mans Magnusson and Yuling Yao and Paul-Christian Bürkner and Topi Paananen and Andrew Gelman},
year = {2022},
note = {R package version 2.5.1},
url = {https://mc-stan.org/loo/},
}
@Article{loo2,
title = {Practical Bayesian model evaluation using leave-one-out cross-validation and WAIC},
author = {Aki Vehtari and Andrew Gelman and Jonah Gabry},
year = {2017},
journal = {Statistics and Computing},
volume = {27},
issue = {5},
pages = {1413--1432},
doi = {10.1007/s11222-016-9696-4},
}
@Article{loo3,
title = {Using stacking to average Bayesian predictive distributions},
author = {Yuling Yao and Aki Vehtari and Daniel Simpson and Andrew Gelman},
year = {2017},
journal = {Bayesian Analysis},
doi = {10.1214/17-BA1091},
}
@Article{Rcpp1,
title = {{Rcpp}: Seamless {R} and {C++} Integration},
author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
journal = {Journal of Statistical Software},
year = {2011},
volume = {40},
number = {8},
pages = {1--18},
doi = {10.18637/jss.v040.i08},
}
@Book{Rcpp2,
title = {Seamless {R} and {C++} Integration with {Rcpp}},
author = {Dirk Eddelbuettel},
publisher = {Springer},
address = {New York},
year = {2013},
note = {ISBN 978-1-4614-6867-7},
doi = {10.1007/978-1-4614-6868-4},
}
@Article{Rcpp3,
title = {{Extending extit{R} with extit{C++}: A Brief Introduction to extit{Rcpp}}},
author = {Dirk Eddelbuettel and James Joseph Balamuta},
journal = {The American Statistician},
year = {2018},
volume = {72},
number = {1},
pages = {28-36},
doi = {10.1080/00031305.2017.1375990},
}
@Manual{munsell,
title = {munsell: Utilities for Using Munsell Colours},
author = {Charlotte Wickham},
year = {2018},
note = {R package version 0.5.0},
url = {https://CRAN.R-project.org/package=munsell},
}
@Manual{fansi,
title = {fansi: ANSI Control Sequence Aware String Functions},
author = {Brodie Gaslam},
year = {2022},
note = {R package version 1.0.3},
url = {https://CRAN.R-project.org/package=fansi},
}
@Manual{abind,
title = {abind: Combine Multidimensional Arrays},
author = {Tony Plate and Richard Heiberger},
year = {2016},
note = {R package version 1.4-5},
url = {https://CRAN.R-project.org/package=abind},
}
@Article{RefManageR1,
author = {Mathew William McLean},
title = {RefManageR: Import and Manage BibTeX and BibLaTeX References in R},
journal = {The Journal of Open Source Software},
year = {2017},
doi = {10.21105/joss.00338},
}
@Manual{RefManageR2,
author = {Mathew William McLean},
title = {Straightforward Bibliography Management in R Using the RefManager Package},
note = {arXiv: 1403.2036 [cs.DL]},
year = {2014},
url = {https://arxiv.org/abs/1403.2036},
}
@Manual{viridis,
title = {{viridis} - Colorblind-Friendly Color Maps for R},
author = {{Garnier} and {Simon} and {Ross} and {Noam} and {Rudis} and {Robert} and {Camargo} and Antônio Pedro and {Sciaini} and {Marco} and {Scherer} and {Cédric}},
year = {2021},
note = {R package version 0.6.2},
url = {https://sjmgarnier.github.io/viridis/},
doi = {10.5281/zenodo.4679424},
doi = {10.5281/zenodo.4679424},
}
@Manual{lifecycle,
title = {lifecycle: Manage the Life Cycle of your Package Functions},
author = {Lionel Henry and Hadley Wickham},
year = {2022},
note = {R package version 1.0.2},
url = {https://CRAN.R-project.org/package=lifecycle},
}
@Manual{yaml,
title = {yaml: Methods to Convert R Data to YAML and Back},
author = {Shawn P Garbett and Jeremy Stephens and Kirill Simonov and Yihui Xie and Zhuoer Dong and Hadley Wickham and Jeffrey Horner and {reikoch} and Will Beasley and Brendan O'Connor and Gregory R. Warnes and Michael Quinn and Zhian N. Kamvar},
year = {2022},
note = {R package version 2.3.5},
url = {https://CRAN.R-project.org/package=yaml},
}
@Article{stringi,
title = {{stringi}: {F}ast and portable character string processing in {R}},
author = {Marek Gagolewski},
journal = {Journal of Statistical Software},
year = {2022},
volume = {103},
number = {2},
pages = {1--59},
doi = {10.18637/jss.v103.i02},
}
@Manual{carData,
title = {carData: Companion to Applied Regression Data Sets},
author = {John Fox and Sanford Weisberg and Brad Price},
year = {2022},
note = {R package version 3.0-5},
url = {https://CRAN.R-project.org/package=carData},
}
@Manual{pkgbuild,
title = {pkgbuild: Find Tools Needed to Build R Packages},
author = {Hadley Wickham and Jim Hester and Gábor Csárdi},
year = {2021},
note = {R package version 1.3.1},
url = {https://CRAN.R-project.org/package=pkgbuild},
}
@Article{plyr,
title = {The Split-Apply-Combine Strategy for Data Analysis},
author = {Hadley Wickham},
journal = {Journal of Statistical Software},
year = {2011},
volume = {40},
number = {1},
pages = {1--29},
url = {https://www.jstatsoft.org/v40/i01/},
}
@Manual{grid,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2022},
url = {https://www.R-project.org/},
}
@Manual{parallel,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2022},
url = {https://www.R-project.org/},
}
@Manual{promises,
title = {promises: Abstractions for Promise-Based Asynchronous Programming},
author = {Joe Cheng},
year = {2021},
note = {R package version 1.2.0.1},
url = {https://CRAN.R-project.org/package=promises},
}
@Manual{fresh,
title = {fresh: Create Custom 'Bootstrap' Themes to Use in 'Shiny'},
author = {Victor Perrier and Fanny Meyer},
year = {2020},
note = {R package version 0.2.0},
url = {https://CRAN.R-project.org/package=fresh},
}
@Manual{shinydashboard,
title = {shinydashboard: Create Dashboards with 'Shiny'},
author = {Winston Chang and Barbara {Borges Ribeiro}},
year = {2021},
note = {R package version 0.7.2},
url = {https://CRAN.R-project.org/package=shinydashboard},
}
@Manual{crayon,
title = {crayon: Colored Terminal Output},
author = {Gábor Csárdi},
year = {2022},
note = {R package version 1.5.2},
url = {https://CRAN.R-project.org/package=crayon},
}
@Manual{methods,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2022},
url = {https://www.R-project.org/},
}
@Book{lattice,
title = {Lattice: Multivariate Data Visualization with R},
author = {Deepayan Sarkar},
publisher = {Springer},
address = {New York},
year = {2008},
note = {ISBN 978-0-387-75968-5},
url = {http://lmdvr.r-forge.r-project.org},
}
@Manual{knitr1,
title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
author = {Yihui Xie},
year = {2022},
note = {R package version 1.40},
url = {https://yihui.org/knitr/},
}
@Book{knitr2,
title = {Dynamic Documents with {R} and knitr},
author = {Yihui Xie},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2015},
edition = {2nd},
note = {ISBN 978-1498716963},
url = {https://yihui.org/knitr/},
}
@InCollection{knitr3,
booktitle = {Implementing Reproducible Computational Research},
editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
author = {Yihui Xie},
publisher = {Chapman and Hall/CRC},
year = {2014},
note = {ISBN 978-1466561595},
url = {http://www.crcpress.com/product/isbn/9781466561595},
}
@Manual{ps,
title = {ps: List, Query, Manipulate System Processes},
author = {Jay Loden and Dave Daeschler and Giampaolo Rodola' and Gábor Csárdi},
year = {2022},
note = {R package version 1.7.1},
url = {https://CRAN.R-project.org/package=ps},
}
@Manual{pillar,
title = {pillar: Coloured Formatting for Columns},
author = {Kirill Müller and Hadley Wickham},
year = {2022},
note = {R package version 1.8.1},
url = {https://CRAN.R-project.org/package=pillar},
}
@Manual{ggpubr,
title = {ggpubr: 'ggplot2' Based Publication Ready Plots},
author = {Alboukadel Kassambara},
year = {2020},
note = {R package version 0.4.0},
url = {https://CRAN.R-project.org/package=ggpubr},
}
@Manual{boot1,
title = {boot: Bootstrap R (S-Plus) Functions},
author = {Angelo Canty and B. D. Ripley},
year = {2021},
note = {R package version 1.3-28},
}
@Book{boot2,
title = {Bootstrap Methods and Their Applications},
author = {A. C. Davison and D. V. Hinkley},
publisher = {Cambridge University Press},
address = {Cambridge},
year = {1997},
note = {ISBN 0-521-57391-2},
url = {http://statwww.epfl.ch/davison/BMA/},
}
@Manual{markdown,
title = {markdown: Render Markdown with the C Library 'Sundown'},
author = {JJ Allaire and Jeffrey Horner and Yihui Xie and Vicent Marti and Natacha Porte},
year = {2019},
note = {R package version 1.1},
url = {https://CRAN.R-project.org/package=markdown},
}
@Manual{bayclumpr,
title = {bayclumpr: Bayesian Analysis of Clumped Isotope Datasets},
author = {Cristian {Roman Palacios} and Hannah M. Caroll and Aradhna Tripati},
year = {2022},
note = {https://bayclump.tripatilab.epss.ucla.edu/,
https://tripati-lab.github.io/bayclumpr/},
}
@Article{ggsignif,
title = {{ggsignif}: R Package for Displaying Significance Brackets for {'ggplot2'}},
author = {Ahlmann-Eltze Constantin and Indrajeet Patil},
year = {2021},
journal = {PsyArxiv},
url = {https://psyarxiv.com/7awm6},
doi = {10.31234/osf.io/7awm6},
}
@Manual{codetools,
title = {codetools: Code Analysis Tools for R},
author = {Luke Tierney},
year = {2020},
note = {R package version 0.2-18},
url = {https://CRAN.R-project.org/package=codetools},
}
@Manual{stats4,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2022},
url = {https://www.R-project.org/},
}
@Manual{glue,
title = {glue: Interpreted String Literals},
author = {Jim Hester and Jennifer Bryan},
year = {2022},
note = {R package version 1.6.2},
url = {https://CRAN.R-project.org/package=glue},
}
@Manual{evaluate,
title = {evaluate: Parsing and Evaluation Tools that Provide More Details than the
Default},
author = {Hadley Wickham and Yihui Xie},
year = {2022},
note = {R package version 0.16},
url = {https://CRAN.R-project.org/package=evaluate},
}
@Manual{deming,
title = {deming: Deming, Theil-Sen, Passing-Bablock and Total Least Squares
Regression},
author = {Terry Therneau},
year = {2018},
note = {R package version 1.4},
url = {https://CRAN.R-project.org/package=deming},
}
@Manual{data.table,
title = {data.table: Extension of `data.frame`},
author = {Matt Dowle and Arun Srinivasan},
year = {2021},
note = {R package version 1.14.2},
url = {https://CRAN.R-project.org/package=data.table},
}
@Article{IsoplotR,
title = {{IsoplotR}: a free and open toolbox for geochronology},
author = {Pieter Vermeesch},
journal = {Geoscience Frontiers},
year = {2018},
volume = {9},
pages = {1479-1493},
url = {https://doi.org/10.1016/j.gsf.2018.04.001},
}
@Manual{RcppParallel,
title = {RcppParallel: Parallel Programming Tools for 'Rcpp'},
author = {JJ Allaire and Romain Francois and Kevin Ushey and Gregory Vandenbrouck and Marcus Geelnard and {Intel}},
year = {2022},
note = {R package version 5.1.5},
url = {https://CRAN.R-project.org/package=RcppParallel},
}
@Manual{vctrs,
title = {vctrs: Vector Helpers},
author = {Hadley Wickham and Lionel Henry and Davis Vaughan},
year = {2022},
note = {R package version 0.4.2},
url = {https://CRAN.R-project.org/package=vctrs},
}
@Manual{httpuv,
title = {httpuv: HTTP and WebSocket Server Library},
author = {Joe Cheng and Winston Chang},
year = {2022},
note = {R package version 1.6.6},
url = {https://CRAN.R-project.org/package=httpuv},
}
@Manual{graphics,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2022},
url = {https://www.R-project.org/},
}
@Manual{cellranger,
title = {cellranger: Translate Spreadsheet Cell Ranges to Rows and Columns},
author = {Jennifer Bryan},
year = {2016},
note = {R package version 1.1.0},
url = {https://CRAN.R-project.org/package=cellranger},
}
@Manual{gtable,
title = {gtable: Arrange 'Grobs' in Tables},
author = {Hadley Wickham and Thomas Lin Pedersen},
year = {2022},
note = {R package version 0.3.1},
url = {https://CRAN.R-project.org/package=gtable},
}
@Manual{purrr,
title = {purrr: Functional Programming Tools},
author = {Lionel Henry and Hadley Wickham},
year = {2020},
note = {R package version 0.3.4},
url = {https://CRAN.R-project.org/package=purrr},
}
@Manual{tidyr,
title = {tidyr: Tidy Messy Data},
author = {Hadley Wickham and Maximilian Girlich},
year = {2022},
note = {R package version 1.2.0},
url = {https://CRAN.R-project.org/package=tidyr},
}
@Manual{bib2df,
title = {bib2df: Parse a BibTeX File to a Data Frame},
author = {Philipp Ottolinger},
year = {2019},
note = {R package version 1.1.1},
url = {https://CRAN.R-project.org/package=bib2df},
}
@Manual{assertthat,
title = {assertthat: Easy Pre and Post Assertions},
author = {Hadley Wickham},