Skip to content

Activity

Showing most recent first

update readme for correct nhmmer flags

Sawwavepushed 2 commits to main • c111706…be274c5 • 
on Nov 14, 2023

update the makefile for benchmark

Sawwavepushed 6 commits to main • 7801dbe…c111706 • 
on Nov 14, 2023

add script to generate benchmarking RFAM slices

Sawwavepushed 1 commit to main • 2ad4357…7801dbe • 
on Nov 13, 2023

fix typo in gumbel distribution

Sawwavepushed 1 commit to main • bb6e721…2ad4357 • 
on Oct 27, 2023

add forgotten semicolons

Sawwavepushed 1 commit to main • 0949c2b…bb6e721 • 
on Sep 7, 2023

add subheader for searching with HAVAC

Sawwavepushed 1 commit to main • 22b2517…0949c2b • 
on Sep 7, 2023

update readme with usage information

Sawwavepushed 3 commits to main • 19b95b9…22b2517 • 
on Sep 7, 2023

remove HavacHit from target sources

Sawwavepushed 2 commits to main • 0af4172…19b95b9 • 
on Sep 7, 2023

move position types to hls.hpp to remove ap_uint import

Sawwavepushed 2 commits to main • b561ed5…0af4172 • 
on Sep 7, 2023

remove deprecated files

Sawwavepushed 1 commit to main • 1be0e39…b561ed5 • 
on Sep 7, 2023

update to new hitReports & binary search to find local phmm position+…

Sawwavepushed 20 commits to main • d4163a6…1be0e39 • 
on Sep 7, 2023

add .xclbin FPGA design bin file

Sawwavepushed 7 commits to main • 92a4793…d4163a6 • 
on Sep 7, 2023

update phmmVectorLoop for new hitReporting system

Sawwavepushed 7 commits to main • 474ac94…92a4793 • 
on Sep 7, 2023

remove deprecated struct types

Sawwavepushed 10 commits to main • 88c83cc…474ac94 • 
on Sep 7, 2023

add tool for comparing hits between HAVAC/HMMER

Sawwavepushed 16 commits to main • a26c68e…88c83cc • 
on Jun 20, 2023

update kernel to use score queue class, hit report count as AXI inter…

Sawwavepushed 4 commits to main • dd4a80b…a26c68e • 
on May 19, 2023

add ability to generate sequences with flanking junk and indels

Sawwavepushed 17 commits to main • 9376d5b…dd4a80b • 
on May 19, 2023

change hitVerifier to verify parallel hit groups

Sawwavepushed 10 commits to main • f78b6c0…9376d5b • 
on Apr 27, 2023

update havac host to optionally take xclbin src

Sawwavepushed 1 commit to main • 5269457…f78b6c0 • 
on Apr 6, 2023

change HAVAC to take p value on constructor

Sawwavepushed 6 commits to main • f0efa19…5269457 • 
on Mar 30, 2023

fix bug where verifier didnt 0 out scores on hit

Sawwavepushed 1 commit to main • fd2f886…f0efa19 • 
on Mar 13, 2023

update to only verify SSV on diags that could hit

Sawwavepushed 2 commits to main • 983d8a4…fd2f886 • 
on Mar 13, 2023

fix * position in argument lists for pointers

Sawwavepushed 1 commit to main • d7a067e…983d8a4 • 
on Mar 10, 2023