setup.py

# -*- coding: utf-8 -*-
# @Time : 2022/6/6 17:19
# @Author : Tory Deng
# @File : setup.py
# @Software: PyCharm
from setuptools import find_packages, setup

with open("README.md", encoding="utf-8") as f:
    LONG_DESCRIPTION = f.read()

setup(
    name="LEGEND",
    version="0.1.1",
    description="An integrative algorithm for identifying co-expressed and cofunctional genes in "
    "multimodal transcriptomic sequencing data",
    long_description=LONG_DESCRIPTION,
    long_description_content_type="text/markdown",
    author="Tao Deng",
    author_email="taodeng@link.cuhk.edu.cn",
    url="https://github.com/ToryDeng/LEGEND",
    license="GPL v3",
    classifiers=[
        "Programming Language :: Python :: 3",
        "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
        "Operating System :: OS Independent",
    ],
    python_requires=">=3.9",
    install_requires=[
        "anndata>=0.8.0",
        "numpy>=1.21.6",
        "setuptools>=59.5.0",
        "scanpy>=1.9.1",
        "scipy>=1.9.3",
        "loguru>=0.6.0",
        "hdbscan>=0.8.29",
        "scikit-learn>=1.2.0",
        "igraph>=0.10.2",
        "leidenalg>=0.9.1",
        "pandas>=1.5.2",
        "SpaGCN>=1.2.5",
        "squidpy>=1.2.2",
        "torch>=1.13.1",
        "opencv-python>=4.6.0",
    ],
    packages=find_packages(exclude=("tests", "figures", "data", "docs", "simulation")),
    zip_safe=False,
)