90-resources.Rmd

# Resources {-}

This section has links to additional resources on package development, many of
which were used in developing these materials.

## Official guides {-}

### CRAN {-}

* **Writing R extensions**
  https://cran.r-project.org/doc/manuals/R-exts.html

### Bioconductor {-}

* **Bioconductor Package Guidelines**
  https://www.bioconductor.org/developers/package-guidelines/
* **Building Packages for Bioconductor**
  https://www.bioconductor.org/developers/how-to/buildingPackagesForBioc/
* **Bioconductor Package Submission**
  https://bioconductor.org/developers/package-submission/

### rOpenSci {-}

* **rOpenSci Packages: Development, Maintenance, and Peer Review** 
  https://devguide.ropensci.org/

### RStudio {-}

* **Developing Packages with RStudio**
  https://support.rstudio.com/hc/en-us/articles/200486488-Developing-Packages-with-RStudio
* **Building, Testing and Distributing Packages**
  https://support.rstudio.com/hc/en-us/articles/200486508-Building-Testing-and-Distributing-Packages
* **Writing Package Documentation**
  https://support.rstudio.com/hc/en-us/articles/200532317-Writing-Package-Documentation

## Books {-}

* **R Packages** (Hadley Wickham)
  http://r-pkgs.had.co.nz/
* **Advanced R** (Hadley Wickam)
  https://adv-r.hadley.nz/
* **Advanced R Course** (Florian Privé)
  https://privefl.github.io/advr38book/

## Tutorials {-}

* **Writing an R package from scratch** (Hilary Parker)
  https://hilaryparker.com/2014/04/29/writing-an-r-package-from-scratch/
* **Writing an R package from scratch (Updated)** (Thomas Westlake)
  https://r-mageddon.netlify.com/post/writing-an-r-package-from-scratch/
* **usethis workflow for package development** (Emil Hvitfeldt)
  https://www.hvitfeldt.me/blog/usethis-workflow-for-package-development/
* **R package primer** (Karl Broman)
  https://kbroman.org/pkg_primer/
* **R Package Development Pictorial** (Matthew J Denny)
  http://www.mjdenny.com/R_Package_Pictorial.html
* **Building R Packages with Devtools** (Jiddu Alexander)
  http://www.jiddualexander.com/blog/r-package-building/
* **Developing R packages** (Jeff Leek)
  https://github.com/jtleek/rpackages
* **R Package Tutorial** (Colautti Lab)
  https://colauttilab.github.io/RCrashCourse/Package_tutorial.html
* **Instructions for creating your own R package** (MIT)
  http://web.mit.edu/insong/www/pdf/rpackage_instructions.pdf
* **How to Create and Distribute an R Package** (Shian Su)
  https://medium.com/@shiansu/how-to-create-and-distribute-an-r-package-a296217435dc

## Workshops and courses {-}

* **R Forwards Package Workshop** (Chicago, February 23, 2019) 
  https://github.com/forwards/workshops/tree/master/Chicago2019
* **Write your own R package** (UBC STAT 545)
  http://stat545.com/packages00_index.html

## Blogs {-}

* **How to develop good R packages (for open science)** (Malle Salmon)
  https://masalmon.eu/2017/12/11/goodrpackages/

## Style {-}

* **Tidyverse**
  https://style.tidyverse.org/
* **Google**
  https://google.github.io/styleguide/Rguide.html
* **Jean Fan**
  https://jef.works/R-style-guide/
* **A Computational Analysis of the Dynamics of R Style Based on 94 Million Lines of Code from All CRAN Packages in the Past 20 Years.** (Yen, C.Y., Chang, M.H.W., Chan, C.H.)
  https://github.com/chainsawriot/rstyle