From d54743358027261abf6063070b4f314fefe23eaa Mon Sep 17 00:00:00 2001 From: Pablo Riesgo-Ferreiro Date: Sun, 30 May 2021 07:54:01 +0200 Subject: [PATCH] add DOI --- README.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 5c655f2..5c36f9a 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,7 @@ # TronFlow variant normalization pipeline +[![DOI](https://zenodo.org/badge/372133189.svg)](https://zenodo.org/badge/latestdoi/372133189) + This pipeline aims at normalizing variants represented in a VCF into the convened normal form as described in Tan et al., 2015. The variant normalization is based on the implementation in vt and bcftools. The pipeline is implemented on the Nextflow framework. @@ -138,4 +140,4 @@ Output: * Adrian Tan, Gonçalo R. Abecasis and Hyun Min Kang. Unified Representation of Genetic Variants. Bioinformatics (2015) 31(13): 2202-2204](http://bioinformatics.oxfordjournals.org/content/31/13/2202) and uses bcftools [Li, H. (2011). A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics (Oxford, England), 27(21), 2987–2993. 10.1093/bioinformatics/btr509 * Danecek P, Bonfield JK, Liddle J, Marshall J, Ohan V, Pollard MO, Whitwham A, Keane T, McCarthy SA, Davies RM, Li H. Twelve years of SAMtools and BCFtools. Gigascience. 2021 Feb 16;10(2):giab008. doi: 10.1093/gigascience/giab008. PMID: 33590861; PMCID: PMC7931819. -* Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., & Notredame, C. (2017). Nextflow enables reproducible computational workflows. Nature Biotechnology, 35(4), 316–319. 10.1038/nbt.3820 \ No newline at end of file +* Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., & Notredame, C. (2017). Nextflow enables reproducible computational workflows. Nature Biotechnology, 35(4), 316–319. 10.1038/nbt.3820