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From the latest memote report, the following biomass tests are giving unexpected results:
Biomass consistency = 0
GAM is not detected (the test errors) is detected
Unrealistic Growth Rate In Default Condition = true false
Ratio of Direct Metabolites in Biomass Reaction = 0.7 0.14
Number of Missing Essential Biomass Precursors = 37 30
Many of these tests failing may be a result of an improper detection of our biomass pseudoreaction as "clustered", i.e. separated into protein pseudoreaction, lipid pseudoreaction, etc.
Unrealistic Growth Rate In Default Condition = true is likely a bug in memote, I've seen it a couple of times now in models which should be fine. I'll have to dig around more to pinpoint the cause though!
Description of the issue:
From the latest memote report, the following biomass tests are giving unexpected results:
is not detected (the test errors)is detectedtruefalse0.70.143730Many of these tests failing may be a result of an improper detection of our biomass pseudoreaction as "clustered", i.e. separated into
protein pseudoreaction
,lipid pseudoreaction
, etc.More relevant info at opencobra/memote#243
I hereby confirm that I have:
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