CHANGELOG.md

0.22.0 (2023-12-20)

This release adds a new Bioconductor version (3.18) and various package updates. It also provides images that have patches for the SSH Terrapin vulnerability in the SSH servers.

0.21.0 (2023-10-31)

Fixes and updates

• chore: add new R version (#396) (7941b9c), closes #396
• chore: remove unneded nodejs pin (#386) (e5f63f2), closes #386
• chore(ci): publish tagged homedir env images (#395) (aaf36ad), closes #395

0.20.0 (2023-10-17)

Features

• image with conda packages in home directory (#391) (02d46d5)

0.19.0 (2023-08-04)

Includes package upgrades and a CUDA image with CUDA 11.8.

Features

• add CUDA 11.8 images (#368) (00f8986)

0.18.1 (2023-06-29)

Includes package upagrades and a switch to a new shell prompt.

Bug Fixes

• use go-based powerline-shell (#358) (c24c99a)

0.18.0 (2023-06-12)

Bump version of the renku CLI.

0.17.0 (2023-05-26)

Features

• support different Julia versions. Users can configure their image to use either 1.7.1, 1.8.5 or 1.9.0. See the docker hub listing for valid tags.

Bug fixes

• Add the _toil_worker executable needed for renku workflow functionality to the PATH in the container

0.16.0 (2023-03-31)

Features

• support multi-platform build using buildx (#212) (d15203a)

Bug Fixes

• ensure that the PATH is set correctly in VSCode (#326)

0.15.1 (2023-03-21)

Features

• add bioc 3.16 and 3.17 to matrix (#321) (abcc3a3)

Bug Fixes

• use jupyter server to launch notebooks if possible (#320) (0361fdc)

0.15.0 (2023-03-10)

Note that the version of JupyterLab has been bumped with this release, which also means we default to Python 3.10 now.

Bug Fixes

• image tagging consistency (#313) (e6c1294)

Features

• use mamba and update to JL 3.6.1 (f6b7e48)
• add rclone and modify shell prompt (#314) (60c642a)

0.14.0 (2023-02-14)

Features:

• adds support for SSH into sessions.
• Add cuda 11.7 builds

Bug Fixes:

• Install Git LFS from a source tarball.

0.13.1 (2022-10-25)

This release fixes a problem with the jupyter library nbconvert that is used internally by jupyter servers and notebooks.

Bug Fixes

• broken nbconvert (#271) (b356456)

0.13.0 (2022-09-28)

This release adds a new image with Python 3.10, updates to libraries and improvements to the acceptance tests we run in our CI pipelines.

0.12.0 (2022-08-09)

A number of underlying libraries and applications are updated in this version, including an upgrade to JupyterLab 3.4.0 - see this PR.

Bug Fixes

• build qgis image #258
• build R images #244
• reduce vulnerabilities #214

Features

• update R version #237

0.11.1 (2022-03-21)

Bug Fixes

• add renku cli to PATH in rstudio (#232) (8cd44bb)

0.11.0

Bug fixes

• bumps Renku versions #225 #226

Features

• add VNC-enabled images: MATLAB and QGIS: #222, #223
• rebuild CUDA based images and update versions #222 #224
• update Julia version to 1.7.1 #221
• update R and RStudio versions #218

0.10.3 (2021-11-25)

Bug Fixes

• fix a PATH misconfiguration when installing VSCode (#205)

0.10.2 (2021-11-17)

Bug Fixes

• image build and bump base image version (#197) (cddd6a9)
• renku not found error (#193) (5f9ee64)

0.10.1 (2021-09-09)

Bug Fixes

• allow rstudio to run in an iframe (6ac7fb8)
• remove logic to avoid race condition in entrypoint (621e208)
• use virtualenv manually instead of pipx for renku install (ba6cccc)

0.10.0 (2021-09-01)

Bug Fixes

• avoid race-condition in entrypoint (37143ec)

Features

• add base image for batch execution (#173) (141a832), closes #172
• make images fully amalthea ready (1dd8154)

0.9.0 (2021-07-22)

Features

• add acceptance tests (#175) (add75b1)

0.8.0 (2021-07-09)

Bug Fixes

• replace ~ with ${HOME} in PATH (#169) (23d30d4)

Features

• upgrade JupyterLab to 3.0.x (#137) (274c0d4)

0.7.7 (2021-06-09)

Bug Fixes

• r: add star-notebook.sh script (2debcbe)

Features

• add jq to base py (#165) (e1e7d32)
• adding calcutta default fonts for vnc (#167) (a3294af)
• vnc upgrades (#156) (cc2b9ad)

0.7.6 (2021-05-10)

Features

• add renku wallpaper and set it as the default (#146) (c0d59fa)
• update fonts; add gnome-terminal, git-gui, gitk and their desktop icons (#145) (faae1f6)

0.7.5 (2021-04-06)

Features

• add vnc-enabled base image (#143) (0a667be)

0.7.4 (2021-02-10)

Features

• add vscode install script (#134) (5534f22)

0.7.3 (2020-11-12)

Bug Fixes

• do the renku-env after git credentials are configured (#133) (f3a7a37)

0.7.2 (2020-11-02)

Bug Fixes

• ensure local/bin is in PATH (#132) (158d97a)

0.7.1 (2020-10-21)

Bug Fixes

• global git credentials and add post-init functionality (#130) (a1121ee)
• pin RStudio version (#125) (e9a1941), closes #124

0.7.0 (2020-09-30)

0.6.3 (2020-05-26)

0.6.2 (2020-04-22)

Bug Fixes

• restore makefile commands (#82) (408e107), closes #81

Features

• add julia (#84) (031fa69)

0.6.1 (2020-03-31)

0.6.0 (2020-03-26)

0.5.2 (2020-03-06)

0.5.0 (2020-03-03)

0.4.4 (2020-02-12)

Features

• adding a bioconductor base (#67) (085b7e7)
• inject environment setup into session (b55a29e), closes #64

0.4.3 (2019-11-26)

Bug Fixes

• enable travis tags deploy (af865dd)

0.4.2 (2019-11-05)

0.4.0 (2019-10-28)

0.3.8 (2019-09-19)

0.3.7 (2019-08-23)

Bug Fixes

• avoid lab rebuild on server launch (0d77ab3), closes #52

0.3.6 (2019-08-08)

Bug Fixes

• pin r-base to avoid dependency issues (133660e)

0.3.5 (2019-07-26)

Bug Fixes

• remove jupyterlab extension (143bf0b), closes #39 #40

Features

• add graphviz to base image (acab9d7)
• added pre-stop pod lifecycle script (2a32302)

0.3.4 (2019-04-02)

0.3.3 (2019-03-07)

Bug Fixes

• resolve build problems and psutil dependency (#15) (679b6b2)

0.3.2 (2018-11-28)