pyproject.toml

[build-system]
requires = ["setuptools", "wheel", "setuptools_scm"]
build-backend = "setuptools.build_meta"

[tool.setuptools_scm]
# See configuration details in https://github.com/pypa/setuptools_scm
version_scheme = "release-branch-semver"
local_scheme = "node-and-date"
normalize = false
root = "."
relative_to = "setup.py"
write_to = 'culebrONT/_version.py'

[tool.tox]
legacy_tox_ini = """
[tox]
envlist = py{38,39}
skip_missing_interpreters = True
skipsdist=False
isolated_build=True

[gh-actions]
python = 3.8: py38

[testenv:py{38,39}]
description = Run the install in Python 3.8
skip_install = False
changedir={envdir}
whitelist_externals =
    bash
    echo
envdir =
    py38: {toxworkdir}/py38
    py39: {toxworkdir}/py39
setenv =
    PATH = {toxinidir}{:}{env:PATH}
commands =
    culebrONT --help
    bash -ec 'echo `pwd`'
    bash -ec 'CPDIR="./lib/python3.8/site-packages/culebrONT/containers/"; DIR="/usr/local/culebrONT/Containers"; if [[ -d $DIR ]]; then ls $DIR;  echo "copy Containers files in $DIR to $CPDIR"; ln -sf $DIR/* $CPDIR; fi'
    culebrONT install_local


[run]
description = Run Installation culebrONT install_local
changedir={envdir}
skipsdist=True
skip_install=True
commands =
    culebrONT test_install -d test
    culebrONT run_local --threads 14 --config {posargs} --singularity-args '--bind /builds:/builds'


[testenv:py38-run]
description = Run workflow pass on args to culebrONT
envdir =
    py38: {toxworkdir}/py38
    py39: {toxworkdir}/py39
setenv =
    PATH = {toxinidir}{:}{env:PATH}
changedir={envdir}
skipsdist=True
skip_install=True
commands = {[run]commands}

"""