update logic

Sage-Bionetworks · Aug 15, 2024 · 3dcd8a7 · 3dcd8a7
1 parent 71283bf
commit 3dcd8a7
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/schematic/store/synapse.py b/schematic/store/synapse.py
@@ -792,8 +792,9 @@ def fill_in_entity_id_filename(
                 dataset_files=dataset_files, only_new_files=False, manifest=manifest
             )
 
-            existing_files = manifest["entityId"].isin(all_files["entityId"])
-            manifest.loc[existing_files, "Filename"] = all_files["Filename"]
+            if not manifest.empty:
+                existing_files = manifest["entityId"].isin(all_files["entityId"])
+                manifest.loc[existing_files, "Filename"] = all_files["Filename"]
 
             # update manifest so that it contains new dataset files
             manifest = (