diff --git a/pcangsd/pcangsd.py b/pcangsd/pcangsd.py index 87d2b36..add3d1c 100644 --- a/pcangsd/pcangsd.py +++ b/pcangsd/pcangsd.py @@ -60,8 +60,8 @@ help="Compute the per-individual inbreeding coefficients") parser.add_argument("--inbreed_iter", metavar="INT", type=int, default=500, help="Maximum iterations for inbreeding coefficients estimation - EM (500)") -parser.add_argument("--inbreed_tole", metavar="FLOAT", type=float, default=1e-6, - help="Tolerance for inbreeding coefficients estimation update - EM (1e-6)") +parser.add_argument("--inbreed_tole", metavar="FLOAT", type=float, default=1e-5, + help="Tolerance for inbreeding coefficients estimation update - EM (1e-5)") parser.add_argument("--geno", metavar="FLOAT", type=float, help="Call genotypes from posterior probabilities with threshold") parser.add_argument("--geno_inbreed", metavar="FLOAT", type=float, @@ -79,7 +79,7 @@ parser.add_argument("--admix_alpha", metavar="FLOAT", type=float, default=0, help="Alpha value for regularization in admixture estimations - NMF (0)") parser.add_argument("--admix_seed", metavar="INT", type=int, default=0, - help="Random sede used in admixture estimations - NMF (0)") + help="Random seed used in admixture estimations - NMF (0)") parser.add_argument("--admix_auto", metavar="FLOAT", type=float, help="Enable automatic search for alpha by giving soft upper search bound") parser.add_argument("--admix_depth", metavar="INT", type=int, default=7,