diff --git a/README.md b/README.md index d1e94529..7b4e2274 100644 --- a/README.md +++ b/README.md @@ -80,7 +80,7 @@ the temporary directory by default), ``` r start_using_memoise() -#> Using a cache at: /tmp/RtmpmGP3Do +#> Using a cache at: /tmp/RtmpMLqjUO ``` To stop using `memoise` use, @@ -105,19 +105,19 @@ the Google COVID-19 open data project), use: ``` r nots <- get_national_data() #> Downloading data from https://covid19.who.int/WHO-COVID-19-global-data.csv -#> Rows: 132,360 -#> Columns: 8 +#> Rows: 132483 Columns: 8 +#> ── Column specification ──────────────────────────────────────────────────────── #> Delimiter: "," -#> chr [3]: Country_code, Country, WHO_region -#> dbl [4]: New_cases, Cumulative_cases, New_deaths, Cumulative_deaths -#> date [1]: Date_reported +#> chr (3): Country_code, Country, WHO_region +#> dbl (4): New_cases, Cumulative_cases, New_deaths, Cumulative_deaths +#> date (1): Date_reported #> -#> Use `spec()` to retrieve the guessed column specification -#> Pass a specification to the `col_types` argument to quiet this message +#> ℹ Use `spec()` to retrieve the full column specification for this data. +#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. #> Cleaning data #> Processing data nots -#> # A tibble: 132,482 x 15 +#> # A tibble: 132,483 x 15 #> date un_region who_region country iso_code cases_new cases_total #> #> 1 2020-01-03 Asia EMRO Afghanistan AF 0 0 @@ -130,7 +130,7 @@ nots #> 8 2020-01-03 Americas AMRO Antigua & Bar… AG 0 0 #> 9 2020-01-03 Americas AMRO Argentina AR 0 0 #> 10 2020-01-03 Asia EURO Armenia AM 0 0 -#> # … with 132,472 more rows, and 8 more variables: deaths_new , +#> # … with 132,473 more rows, and 8 more variables: deaths_new , #> # deaths_total , recovered_new , recovered_total , #> # hosp_new , hosp_total , tested_new , tested_total ``` @@ -171,7 +171,7 @@ for example by level 1 region in the UK, use: ``` r uk_nots <- get_regional_data(country = "UK", verbose = FALSE) uk_nots -#> # A tibble: 6,903 x 26 +#> # A tibble: 6,916 x 26 #> date region region_code cases_new cases_total deaths_new deaths_total #> #> 1 2020-01-30 East Mi… E12000004 NA NA NA NA @@ -184,7 +184,7 @@ uk_nots #> 8 2020-01-30 Scotland S92000003 NA NA NA NA #> 9 2020-01-30 South E… E12000008 NA NA NA NA #> 10 2020-01-30 South W… E12000009 NA NA NA NA -#> # … with 6,893 more rows, and 19 more variables: recovered_new , +#> # … with 6,906 more rows, and 19 more variables: recovered_new , #> # recovered_total , hosp_new , hosp_total , tested_new , #> # tested_total , areaType , cumCasesByPublishDate , #> # cumCasesBySpecimenDate , newCasesByPublishDate , @@ -239,7 +239,7 @@ using the following, #> Joseph Palmer, Katharine Sherratt, Richard Martin-Nielsen, Jonnie #> Bevan, Hamish Gibbs, Sebastian Funk and Sam Abbott (2021). #> covidregionaldata: Subnational data for COVID-19 epidemiology, DOI: - #> 10.5281/zenodo.3957539 + #> 10.21105/joss.03290 #> #> A BibTeX entry for LaTeX users is #> @@ -249,9 +249,9 @@ using the following, #> journal = {Journal of Open Source Software}, #> year = {2021}, #> volume = {6}, - #> number = {62}, + #> number = {63}, #> pages = {3290}, - #> doi = {10.5281/zenodo.3957539}, + #> doi = {10.21105/joss.03290}, #> } ## Development @@ -265,7 +265,7 @@ would like to thank the [CMMID COVID-19 working group](https://cmmid.github.io/groups/ncov-group.html) for insightful comments and feedback. -We welcome contributions and new contributors\! We particularly +We welcome contributions and new contributors! We particularly appreciate help adding new data sources for countries at sub-national level, or work on priority problems in the [issues](https://github.com/epiforecasts/covidregionaldata/issues). diff --git a/man/figures/README-g7_plot-1.png b/man/figures/README-g7_plot-1.png index 37097784..51e78de4 100644 Binary files a/man/figures/README-g7_plot-1.png and b/man/figures/README-g7_plot-1.png differ diff --git a/man/figures/README-uk_plot-1.png b/man/figures/README-uk_plot-1.png index bf954530..7f0f3d83 100644 Binary files a/man/figures/README-uk_plot-1.png and b/man/figures/README-uk_plot-1.png differ