From 95e1068e619f2d8816ac5e9fc286926a6bf0ef63 Mon Sep 17 00:00:00 2001 From: Mike VanDenburgh <37340715+mvandenburgh@users.noreply.github.com> Date: Thu, 7 Nov 2024 13:50:23 -0500 Subject: [PATCH] Update metrics CLI invokation in dev docs `--rm_dir` is now `--rm_path`. --- DEVELOPMENT.md | 4 ++-- docs/DevDocs/GettingStarted.md | 4 ++-- docs/DevDocs/IngestingData.md | 6 +++--- 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/DEVELOPMENT.md b/DEVELOPMENT.md index 809c3481a..f82feb259 100644 --- a/DEVELOPMENT.md +++ b/DEVELOPMENT.md @@ -134,7 +134,7 @@ To score data: python -m iarpa_smart_metrics.run_evaluation \ --roi KR_R001 \ --gt_dir ../annotations/site_models/ \ - --rm_dir ../KR_R001/region_models/ \ + --rm_path ../KR_R001/region_model.geojson \ --sm_dir ../KR_R001/site_models/ \ --output_dir ../KR_R001/output \ --eval_num 12 \ @@ -148,6 +148,6 @@ To score data: --sequestered_id KR_R001 \ --db_conn_str postgresql+psycopg2://scoring:secretkey@localhost:5433/scoring ``` -- the rm_dir and sm_dir shgould be your test annotaitons. +- the rm_path and sm_dir shgould be your test annotaitons. - gt annotations can be retrieved from the [Annotation Repo](https://smartgitlab.com/TE/annotations) - be sure to set the val_num and eval_run_num and remember them when ingesting data into RGD. The region, eval_num, eval_run_num and performer are used to connect data loaded in RGD to the scoring data. diff --git a/docs/DevDocs/GettingStarted.md b/docs/DevDocs/GettingStarted.md index 2bd1fa86a..7251c23c9 100644 --- a/docs/DevDocs/GettingStarted.md +++ b/docs/DevDocs/GettingStarted.md @@ -136,7 +136,7 @@ To score data: python -m iarpa_smart_metrics.run_evaluation \ --roi KR_R001 \ --gt_dir ../annotations/site_models/ \ - --rm_dir ../KR_R001/region_models/ \ + --rm_path ../KR_R001/region_model.geojson \ --sm_dir ../KR_R001/site_models/ \ --output_dir ../KR_R001/output \ --eval_num 12 \ @@ -150,6 +150,6 @@ To score data: --sequestered_id KR_R001 \ --db_conn_str postgresql+psycopg2://scoring:secretkey@localhost:5433/scoring ``` -- the rm_dir and sm_dir shgould be your test annotaitons. +- the rm_path and sm_dir shgould be your test annotaitons. - gt annotations can be retrieved from the [Annotation Repo](https://smartgitlab.com/TE/annotations) - be sure to set the val_num and eval_run_num and remember them when ingesting data into RGD. The region, eval_num, eval_run_num and performer are used to connect data loaded in RGD to the scoring data. diff --git a/docs/DevDocs/IngestingData.md b/docs/DevDocs/IngestingData.md index ceee2d65e..3794ffcc0 100644 --- a/docs/DevDocs/IngestingData.md +++ b/docs/DevDocs/IngestingData.md @@ -45,7 +45,7 @@ To score data: python -m iarpa_smart_metrics.run_evaluation \ --roi KR_R001 \ --gt_dir ../annotations/site_models/ \ - --rm_dir ../KR_R001/region_models/ \ + --rm_path ../KR_R001/region_model.geojson \ --sm_dir ../KR_R001/site_models/ \ --output_dir ../KR_R001/output \ --eval_num 12 \ @@ -59,7 +59,7 @@ To score data: --sequestered_id KR_R001 \ --db_conn_str postgresql+psycopg2://scoring:secretkey@localhost:5433/scoring ``` -- the `rm_dir` and `sm_dir` should be your test annotations. +- the `rm_path` and `sm_dir` should be your test annotations. - ground truth annotations can be retrieved from the [Annotation Repo](https://smartgitlab.com/TE/annotations) - be sure to set the `val_num` and `eval_run_num` and remember them when ingesting data into RGD. The `region`, `eval_num`, `eval_run_num` and `performer` are used to connect data loaded in RGD to the scoring data. - For Scoring data with points execute the following command: @@ -77,7 +77,7 @@ To score data: --no-viz-activity-metrics \ --sequestered_id KR_R002 \ --db_conn_str postgresql+psycopg2://scoring:secretkey@localhost:5433/scoring \ - --rm_dir ../KR_R002/region_models/ \ + --rm_path ../KR_R002/region_model.geojson \ --sm_dir ../KR_R002/site_models/ \ --gt_points_file ../annotations/supplemental_data/point_based_annotations.geojson ```