travis_fold:start:worker_info Worker information hostname: 02318f75-0ca8-459f-b7bf-a9f27a1a0af2@1.production-4-worker-org-c-3-gce version: v3.1.0 https://github.com/travis-ci/worker/tree/5b106cb773802277034d07b0a865af58d67bb1d2 instance: testing-gce-dd1ecd1f-628d-46e4-a340-11e16892d6d6:travis-ci-amethyst-trusty-1503972832 (via amqp) startup: 21.079014752s travis_fold:end:worker_info travis_fold:start:system_info Build system information Build language: r Build group: stable Build dist: xenial Build id: 290835044 Job id: 290835046 Runtime kernel version: 4.4.0-93-generic travis-build version: 3fd6c3fda Build image provisioning date and time Tue Aug 29 02:44:32 UTC 2017 Operating System Details Distributor ID: Ubuntu Description: Ubuntu 14.04.5 LTS Release: 14.04 Codename: trusty Cookbooks Version 4642454 https://github.com/travis-ci/travis-cookbooks/tree/4642454 git version git version 2.14.1 bash version GNU bash, version 4.3.11(1)-release (x86_64-pc-linux-gnu) gcc version gcc (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. docker version Client: Version: 17.03.1-ce API version: 1.27 Go version: go1.7.5 Git commit: c6d412e Built: Mon Mar 27 17:10:36 2017 OS/Arch: linux/amd64 Server: Version: 17.03.1-ce API version: 1.27 (minimum version 1.12) Go version: go1.7.5 Git commit: c6d412e Built: Mon Mar 27 17:10:36 2017 OS/Arch: linux/amd64 Experimental: false clang version clang version 3.9.0 (tags/RELEASE_390/final) Target: x86_64-unknown-linux-gnu Thread model: posix InstalledDir: /usr/local/clang-3.9.0/bin jq version jq-1.5 bats version Bats 0.4.0 shellcheck version 0.4.6 shfmt version v1.3.1 ccache version ccache version 3.1.9 Copyright (C) 2002-2007 Andrew Tridgell Copyright (C) 2009-2011 Joel Rosdahl This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. cmake version cmake version 3.2.2 CMake suite maintained and supported by Kitware (kitware.com/cmake). heroku version heroku-cli/6.13.19-6cd27b3 (linux-x64) node-v8.3.0 imagemagick version Version: ImageMagick 6.7.7-10 2017-07-31 Q16 http://www.imagemagick.org md5deep version 4.2 mercurial version Mercurial Distributed SCM (version 4.2.2) (see https://mercurial-scm.org for more information) Copyright (C) 2005-2017 Matt Mackall and others This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. mysql version mysql Ver 14.14 Distrib 5.6.33, for debian-linux-gnu (x86_64) using EditLine wrapper openssl version OpenSSL 1.0.1f 6 Jan 2014 packer version Packer v1.0.2 Your version of Packer is out of date! The latest version is 1.0.4. You can update by downloading from www.packer.io postgresql client version psql (PostgreSQL) 9.6.4 ragel version Ragel State Machine Compiler version 6.8 Feb 2013 Copyright (c) 2001-2009 by Adrian Thurston subversion version svn, version 1.8.8 (r1568071) compiled Aug 10 2017, 17:20:39 on x86_64-pc-linux-gnu Copyright (C) 2013 The Apache Software Foundation. This software consists of contributions made by many people; see the NOTICE file for more information. Subversion is open source software, see http://subversion.apache.org/ The following repository access (RA) modules are available: * ra_svn : Module for accessing a repository using the svn network protocol. - with Cyrus SASL authentication - handles 'svn' scheme * ra_local : Module for accessing a repository on local disk. - handles 'file' scheme * ra_serf : Module for accessing a repository via WebDAV protocol using serf. - using serf 1.3.3 - handles 'http' scheme - handles 'https' scheme sudo version Sudo version 1.8.9p5 Configure options: --prefix=/usr -v --with-all-insults --with-pam --with-fqdn --with-logging=syslog --with-logfac=authpriv --with-env-editor --with-editor=/usr/bin/editor --with-timeout=15 --with-password-timeout=0 --with-passprompt=[sudo] password for %p: --without-lecture --with-tty-tickets --disable-root-mailer --enable-admin-flag --with-sendmail=/usr/sbin/sendmail --with-timedir=/var/lib/sudo --mandir=/usr/share/man --libexecdir=/usr/lib/sudo --with-sssd --with-sssd-lib=/usr/lib/x86_64-linux-gnu --with-selinux Sudoers policy plugin version 1.8.9p5 Sudoers file grammar version 43 Sudoers path: /etc/sudoers Authentication methods: 'pam' Syslog facility if syslog is being used for logging: authpriv Syslog priority to use when user authenticates successfully: notice Syslog priority to use when user authenticates unsuccessfully: alert Send mail if the user is not in sudoers Use a separate timestamp for each user/tty combo Lecture user the first time they run sudo Root may run sudo Allow some information gathering to give useful error messages Require fully-qualified hostnames in the sudoers file Visudo will honor the EDITOR environment variable Set the LOGNAME and USER environment variables Length at which to wrap log file lines (0 for no wrap): 80 Authentication timestamp timeout: 15.0 minutes Password prompt timeout: 0.0 minutes Number of tries to enter a password: 3 Umask to use or 0777 to use user's: 022 Path to mail program: /usr/sbin/sendmail Flags for mail program: -t Address to send mail to: root Subject line for mail messages: *** SECURITY information for %h *** Incorrect password message: Sorry, try again. Path to authentication timestamp dir: /var/lib/sudo Default password prompt: [sudo] password for %p: Default user to run commands as: root Value to override user's $PATH with: /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin Path to the editor for use by visudo: /usr/bin/editor When to require a password for 'list' pseudocommand: any When to require a password for 'verify' pseudocommand: all File descriptors >= 3 will be closed before executing a command Environment variables to check for sanity: TZ TERM LINGUAS LC_* LANGUAGE LANG COLORTERM Environment variables to remove: RUBYOPT RUBYLIB PYTHONUSERBASE PYTHONINSPECT PYTHONPATH PYTHONHOME TMPPREFIX ZDOTDIR READNULLCMD NULLCMD FPATH PERL5DB PERL5OPT PERL5LIB PERLLIB PERLIO_DEBUG JAVA_TOOL_OPTIONS SHELLOPTS GLOBIGNORE PS4 BASH_ENV ENV TERMCAP TERMPATH TERMINFO_DIRS TERMINFO _RLD* LD_* PATH_LOCALE NLSPATH HOSTALIASES RES_OPTIONS LOCALDOMAIN CDPATH IFS Environment variables to preserve: JAVA_HOME TRAVIS CI DEBIAN_FRONTEND XAUTHORIZATION XAUTHORITY PS2 PS1 PATH LS_COLORS KRB5CCNAME HOSTNAME HOME DISPLAY COLORS Locale to use while parsing sudoers: C Directory in which to store input/output logs: /var/log/sudo-io File in which to store the input/output log: %{seq} Add an entry to the utmp/utmpx file when allocating a pty PAM service name to use PAM service name to use for login shells Create a new PAM session for the command to run in Maximum I/O log sequence number: 0 Local IP address and netmask pairs: 10.240.0.11/255.255.255.255 172.17.0.1/255.255.0.0 Sudoers I/O plugin version 1.8.9p5 gzip version gzip 1.6 Copyright (C) 2007, 2010, 2011 Free Software Foundation, Inc. Copyright (C) 1993 Jean-loup Gailly. This is free software. You may redistribute copies of it under the terms of the GNU General Public License . There is NO WARRANTY, to the extent permitted by law. Written by Jean-loup Gailly. zip version Copyright (c) 1990-2008 Info-ZIP - Type 'zip "-L"' for software license. This is Zip 3.0 (July 5th 2008), by Info-ZIP. Currently maintained by E. Gordon. Please send bug reports to the authors using the web page at www.info-zip.org; see README for details. Latest sources and executables are at ftp://ftp.info-zip.org/pub/infozip, as of above date; see http://www.info-zip.org/ for other sites. Compiled with gcc 4.8.2 for Unix (Linux ELF) on Oct 21 2013. Zip special compilation options: USE_EF_UT_TIME (store Universal Time) BZIP2_SUPPORT (bzip2 library version 1.0.6, 6-Sept-2010) bzip2 code and library copyright (c) Julian R Seward (See the bzip2 license for terms of use) SYMLINK_SUPPORT (symbolic links supported) LARGE_FILE_SUPPORT (can read and write large files on file system) ZIP64_SUPPORT (use Zip64 to store large files in archives) UNICODE_SUPPORT (store and read UTF-8 Unicode paths) STORE_UNIX_UIDs_GIDs (store UID/GID sizes/values using new extra field) UIDGID_NOT_16BIT (old Unix 16-bit UID/GID extra field not used) [encryption, version 2.91 of 05 Jan 2007] (modified for Zip 3) Encryption notice: The encryption code of this program is not copyrighted and is put in the public domain. It was originally written in Europe and, to the best of our knowledge, can be freely distributed in both source and object forms from any country, including the USA under License Exception TSU of the U.S. Export Administration Regulations (section 740.13(e)) of 6 June 2002. Zip environment options: ZIP: [none] ZIPOPT: [none] vim version VIM - Vi IMproved 7.4 (2013 Aug 10, compiled Nov 24 2016 16:43:18) Included patches: 1-52 Extra patches: 8.0.0056 Modified by pkg-vim-maintainers@lists.alioth.debian.org Compiled by buildd@ Huge version without GUI. Features included (+) or not (-): +acl +farsi +mouse_netterm +syntax +arabic +file_in_path +mouse_sgr +tag_binary +autocmd +find_in_path -mouse_sysmouse +tag_old_static -balloon_eval +float +mouse_urxvt -tag_any_white -browse +folding +mouse_xterm -tcl ++builtin_terms -footer +multi_byte +terminfo +byte_offset +fork() +multi_lang +termresponse +cindent +gettext -mzscheme +textobjects -clientserver -hangul_input +netbeans_intg +title -clipboard +iconv +path_extra -toolbar +cmdline_compl +insert_expand -perl +user_commands +cmdline_hist +jumplist +persistent_undo +vertsplit +cmdline_info +keymap +postscript +virtualedit +comments +langmap +printer +visual +conceal +libcall +profile +visualextra +cryptv +linebreak +python +viminfo +cscope +lispindent -python3 +vreplace +cursorbind +listcmds +quickfix +wildignore +cursorshape +localmap +reltime +wildmenu +dialog_con -lua +rightleft +windows +diff +menu -ruby +writebackup +digraphs +mksession +scrollbind -X11 -dnd +modify_fname +signs -xfontset -ebcdic +mouse +smartindent -xim +emacs_tags -mouseshape -sniff -xsmp +eval +mouse_dec +startuptime -xterm_clipboard +ex_extra +mouse_gpm +statusline -xterm_save +extra_search -mouse_jsbterm -sun_workshop -xpm system vimrc file: "$VIM/vimrc" user vimrc file: "$HOME/.vimrc" 2nd user vimrc file: "~/.vim/vimrc" user exrc file: "$HOME/.exrc" fall-back for $VIM: "/usr/share/vim" Compilation: gcc -c -I. -Iproto -DHAVE_CONFIG_H -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 Linking: gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o vim -lm -ltinfo -lnsl -lselinux -lacl -lattr -lgpm -ldl -L/usr/lib/python2.7/config-x86_64-linux-gnu -lpython2.7 -lpthread -ldl -lutil -lm -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions iptables version iptables v1.4.21 curl version curl 7.35.0 (x86_64-pc-linux-gnu) libcurl/7.35.0 OpenSSL/1.0.1f zlib/1.2.8 libidn/1.28 librtmp/2.3 wget version GNU Wget 1.15 built on linux-gnu. rsync version rsync version 3.1.0 protocol version 31 gimme version v1.2.0 nvm version 0.33.2 perlbrew version /home/travis/perl5/perlbrew/bin/perlbrew - App::perlbrew/0.78 phpenv version rbenv 1.1.1-4-g4ebd1bd rvm version rvm 1.29.2 (latest) by Michal Papis, Piotr Kuczynski, Wayne E. Seguin [https://rvm.io/] default ruby version ruby 2.4.1p111 (2017-03-22 revision 58053) [x86_64-linux] CouchDB version couchdb 1.6.1 ElasticSearch version 5.5.0 Installed Firefox version firefox 55.0.2 MongoDB version MongoDB 3.2.16 Pre-installed PostgreSQL versions 9.2.22 9.3.18 9.4.13 9.5.8 9.6.4 RabbitMQ Version 3.6.11 Redis version redis-server 4.0.1 riak version 2.2.3 kerl list installations 19.0 18.3 kiex list kiex elixirs elixir-1.2.6 =* elixir-1.3.2 # => - current # =* - current && default # * - default rebar --version rebar 2.6.4 17 20160831_145136 git 2.6.4-dirty perlbrew list 5.22 (5.22.0) 5.22-extras (5.22.0) 5.22-shrplib (5.22.0) 5.22.0 5.24-extras (5.24.0) 5.24-shrplib (5.24.0) 5.24 (5.24.2) 5.24.2 travis_fold:end:system_info  removed ‘/etc/apt/sources.list.d/basho_riak.list’ W: GPG error: http://repo.mongodb.org/apt/ubuntu trusty/mongodb-org/3.2 Release: The following signatures were invalid: KEYEXPIRED 1507497109 W: The repository 'http://repo.mongodb.org/apt/ubuntu trusty/mongodb-org/3.2 Release' is not signed. W: http://dl.hhvm.com/ubuntu/dists/trusty/InRelease: Signature by key 36AEF64D0207E7EEE352D4875A16E7281BE7A449 uses weak digest algorithm (SHA1) W: http://ppa.launchpad.net/couchdb/stable/ubuntu/dists/trusty/Release.gpg: Signature by key 15866BAFD9BCC4F3C1E0DFC7D69548E1C17EAB57 uses weak digest algorithm (SHA1) Executing: /tmp/tmp.s6ODi6Qu3x/gpg.1.sh --keyserver hkp://keyserver.ubuntu.com:80 --recv EA312927 gpg: requesting key EA312927 from hkp server keyserver.ubuntu.com gpg: key EA312927: "MongoDB 3.2 Release Signing Key " 1 new signature gpg: Total number processed: 1 gpg: new signatures: 1 R for Travis-CI is not officially supported, but is community maintained. Please file any issues at https://github.com/travis-ci/travis-ci/issues and mention @craigcitro and @jimhester in the issue travis_fold:start:R-install Installing R travis_time:start:2655828c $ sudo add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)/" travis_time:end:2655828c:start=1508595305959780346,finish=1508595306468675799,duration=508895453 travis_time:start:1d73200b $ sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 Executing: /tmp/tmp.7RDb4oSJa5/gpg.1.sh --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com gpg: key E084DAB9: public key "Michael Rutter " imported gpg: Total number processed: 1 gpg: imported: 1 (RSA: 1) travis_time:end:1d73200b:start=1508595306473311215,finish=1508595307009980590,duration=536669375 travis_time:start:00875474 $ sudo add-apt-repository -y "ppa:marutter/rrutter" gpg: keyring `/tmp/tmp0e6emyt5/secring.gpg' created gpg: keyring `/tmp/tmp0e6emyt5/pubring.gpg' created gpg: requesting key B04C661B from hkp server keyserver.ubuntu.com gpg: /tmp/tmp0e6emyt5/trustdb.gpg: trustdb created gpg: key B04C661B: public key "Launchpad PPA for marutter" imported gpg: Total number processed: 1 gpg: imported: 1 (RSA: 1) OK travis_time:end:00875474:start=1508595307014718661,finish=1508595308535008285,duration=1520289624 travis_time:start:077884b0 $ sudo add-apt-repository -y "ppa:marutter/c2d4u" gpg: keyring `/tmp/tmpoqg9_u3i/secring.gpg' created gpg: keyring `/tmp/tmpoqg9_u3i/pubring.gpg' created gpg: requesting key B04C661B from hkp server keyserver.ubuntu.com gpg: /tmp/tmpoqg9_u3i/trustdb.gpg: trustdb created gpg: key B04C661B: public key "Launchpad PPA for marutter" imported gpg: Total number processed: 1 gpg: imported: 1 (RSA: 1) OK travis_time:end:077884b0:start=1508595308539496412,finish=1508595310062823787,duration=1523327375 travis_time:start:0589bca9 $ sudo apt-get update -qq W: http://dl.hhvm.com/ubuntu/dists/trusty/InRelease: Signature by key 36AEF64D0207E7EEE352D4875A16E7281BE7A449 uses weak digest algorithm (SHA1) W: http://ppa.launchpad.net/couchdb/stable/ubuntu/dists/trusty/Release.gpg: Signature by key 15866BAFD9BCC4F3C1E0DFC7D69548E1C17EAB57 uses weak digest algorithm (SHA1) travis_time:end:0589bca9:start=1508595310067564587,finish=1508595317733623027,duration=7666058440 travis_time:start:03ce6400 $ sudo apt-get install -y --no-install-recommends build-essential gcc g++ libblas-dev liblapack-dev libncurses5-dev libreadline-dev libjpeg-dev libpng-dev zlib1g-dev libbz2-dev liblzma-dev cdbs qpdf texinfo libmagick++-dev libssh2-1-dev gfortran Reading package lists... 0% Reading package lists... 100% Reading package lists... Done Building dependency tree... 0% Building dependency tree... 0% Building dependency tree... 50% Building dependency tree... 50% Building dependency tree Reading state information... 0% Reading state information... 0% Reading state information... Done Note, selecting 'libpng12-dev' instead of 'libpng-dev' build-essential is already the newest version (11.6ubuntu6). g++ is already the newest version (4:4.8.2-1ubuntu6). g++ set to manually installed. gcc is already the newest version (4:4.8.2-1ubuntu6). gcc set to manually installed. libbz2-dev is already the newest version (1.0.6-5). libjpeg-dev is already the newest version (8c-2ubuntu8). liblzma-dev is already the newest version (5.1.1alpha+20120614-2ubuntu2). liblzma-dev set to manually installed. libncurses5-dev is already the newest version (5.9+20140118-1ubuntu1). libreadline-dev is already the newest version (6.3-4ubuntu2). zlib1g-dev is already the newest version (1:1.2.8.dfsg-1ubuntu1). zlib1g-dev set to manually installed. libpng12-dev is already the newest version (1.2.50-1ubuntu2.14.04.2). libpng12-dev set to manually installed. The following additional packages will be installed: debhelper dh-apparmor dh-translations gfortran-4.8 intltool intltool-debian libblas3 libencode-locale-perl libfile-listing-perl libgfortran-4.8-dev libgfortran3 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libintl-perl libio-html-perl libio-socket-ssl-perl liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagick++5 libnet-http-perl libnet-ssleay-perl libqpdf13 libssh2-1 libtext-unidecode-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-perl po-debconf python-scour Suggested packages: devscripts dh-make apparmor-easyprof gfortran-multilib gfortran-doc gfortran-4.8-multilib gfortran-4.8-doc libgfortran3-dbg libdata-dump-perl libintl-xs-perl libcrypt-ssleay-perl libauthen-ntlm-perl libmail-box-perl python-rsvg python-cairo texlive-base texlive-latex-base texlive-generic-recommended texinfo-doc-nonfree Recommended packages: libhtml-format-perl libio-socket-inet6-perl | libio-socket-ip-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl libmail-sendmail-perl The following NEW packages will be installed: cdbs debhelper dh-apparmor dh-translations gfortran gfortran-4.8 intltool intltool-debian libblas-dev libblas3 libencode-locale-perl libfile-listing-perl libgfortran-4.8-dev libgfortran3 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libintl-perl libio-html-perl libio-socket-ssl-perl liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagick++-dev libmagick++5 libnet-http-perl libnet-ssleay-perl libqpdf13 libssh2-1 libssh2-1-dev libtext-unidecode-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-perl po-debconf python-scour qpdf texinfo 0 upgraded, 48 newly installed, 0 to remove and 96 not upgraded. Need to get 15.1 MB of archives. After this operation, 57.9 MB of additional disk space will be used. 0% [Working] Get:1 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libgfortran3 amd64 4.8.4-2ubuntu1~14.04.3 [248 kB] 0% [1 libgfortran3 13.7 kB/248 kB 6%] 2% [Working] Get:2 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libmagick++5 amd64 8:6.7.7.10-6ubuntu3.9 [102 kB] 2% [2 libmagick++5 12.7 kB/102 kB 12%] 3% [Working] Get:3 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libqpdf13 amd64 5.1.1-1 [295 kB] 3% [3 libqpdf13 8,192 B/295 kB 3%] 5% [Working] Get:4 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/universe amd64 libssh2-1 amd64 1.4.3-2ubuntu0.1 [66.4 kB] 5% [4 libssh2-1 7,617 B/66.4 kB 11%] 5% [Working] Get:5 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 intltool-debian all 0.35.0+20060710.1 [31.6 kB] 5% [5 intltool-debian 6,273 B/31.6 kB 20%] 6% [Waiting for headers] Get:6 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] 6% [6 po-debconf 8,192 B/210 kB 4%] 8% [Working] Get:7 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/main amd64 dh-apparmor all 2.10.95-0ubuntu2.6~14.04.1 [13.0 kB] 8% [7 dh-apparmor 13.0 kB/13.0 kB 100%] 8% [Working] Get:8 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 debhelper all 9.20131227ubuntu1 [604 kB] 8% [8 debhelper 8,192 B/604 kB 1%] 12% [Working] Get:9 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 liburi-perl all 1.60-1 [89.6 kB] 12% [9 liburi-perl 3,823 B/89.6 kB 4%] 13% [Working] Get:10 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libencode-locale-perl all 1.03-1 [12.4 kB] 13% [10 libencode-locale-perl 12.4 kB/12.4 kB 100%] 13% [Working] Get:11 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] 13% [11 libhttp-date-perl 10.4 kB/10.4 kB 100%] 14% [Working] Get:12 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libfile-listing-perl all 6.04-1 [9,774 B] 14% [12 libfile-listing-perl 9,774 B/9,774 B 100%] 14% [Working] Get:13 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] 14% [13 libhtml-tagset-perl 4,771 B/13.5 kB 35%] 14% [Working] Get:14 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libhtml-parser-perl amd64 3.71-1build1 [98.2 kB] 15% [14 libhtml-parser-perl 12.3 kB/98.2 kB 13%] 15% [Working] Get:15 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libhtml-tree-perl all 5.03-1 [215 kB] 15% [15 libhtml-tree-perl 8,192 B/215 kB 4%] 17% [Working] Get:16 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libio-html-perl all 1.00-1 [15.7 kB] 17% [16 libio-html-perl 15.7 kB/15.7 kB 100%] 17% [Waiting for headers] Get:17 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] 18% [17 liblwp-mediatypes-perl 9,456 B/21.7 kB 44%] 18% [Waiting for headers] Get:18 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libhttp-message-perl all 6.06-1 [78.7 kB] 18% [18 libhttp-message-perl 2,415 B/78.7 kB 3%] 19% [Working] Get:19 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libhttp-cookies-perl all 6.00-2 [23.3 kB] 19% [19 libhttp-cookies-perl 10.8 kB/23.3 kB 46%] 19% [Working] Get:20 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] 19% [20 libhttp-negotiate-perl 8,192 B/13.4 kB 61%] 20% [Working] Get:21 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libnet-ssleay-perl amd64 1.58-1 [243 kB] 20% [21 libnet-ssleay-perl 8,192 B/243 kB 3%] 22% [Working] Get:22 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libio-socket-ssl-perl all 1.965-1ubuntu1 [73.7 kB] 22% [22 libio-socket-ssl-perl 8,192 B/73.7 kB 11%] 22% [Working] Get:23 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libnet-http-perl all 6.06-1 [24.2 kB] 22% [23 libnet-http-perl 16.4 kB/24.2 kB 68%] 23% [Working] Get:24 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/main amd64 liblwp-protocol-https-perl all 6.04-2ubuntu0.1 [7,644 B] 23% [24 liblwp-protocol-https-perl 7,644 B/7,644 B 100%] 23% [Working] Get:25 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] 23% [25 libwww-robotrules-perl 8,192 B/14.1 kB 58%] 24% [Working] Get:26 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libwww-perl all 6.05-2 [146 kB] 24% [26 libwww-perl 9,175 B/146 kB 6%] 25% [Working] Get:27 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libxml-parser-perl amd64 2.41-1build3 [294 kB] 25% [27 libxml-parser-perl 8,192 B/294 kB 3%] 27% [Working] Get:28 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 intltool all 0.50.2-2 [52.0 kB] 27% [28 intltool 17.3 kB/52.0 kB 33%] 28% [Working] Get:29 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 dh-translations all 121 [21.6 kB] 28% [Waiting for headers] Get:30 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 python-scour all 0.26-3build1 [40.5 kB] 28% [30 python-scour 16.0 kB/40.5 kB 39%] 29% [Working] Get:31 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 cdbs all 0.4.122ubuntu2 [42.1 kB] 29% [31 cdbs 8,192 B/42.1 kB 19%] 30% [Working] Get:32 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libgfortran-4.8-dev amd64 4.8.4-2ubuntu1~14.04.3 [269 kB] 30% [32 libgfortran-4.8-dev 9,600 B/269 kB 4%] 31% [Working] Get:33 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/main amd64 gfortran-4.8 amd64 4.8.4-2ubuntu1~14.04.3 [4,883 kB] 31% [33 gfortran-4.8 8,192 B/4,883 kB 0%] 58% [Working] Get:34 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 gfortran amd64 4:4.8.2-1ubuntu6 [1,252 B] 58% [34 gfortran 1,252 B/1,252 B 100%] 58% [Waiting for headers] Get:35 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libblas3 amd64 1.2.20110419-7 [215 kB] 58% [35 libblas3 45.2 kB/215 kB 21%] 60% [Working] Get:36 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libblas-dev amd64 1.2.20110419-7 [240 kB] 60% [36 libblas-dev 5,185 B/240 kB 2%] 61% [Working] Get:37 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libintl-perl all 1.23-1build1 [1,204 kB] 61% [37 libintl-perl 27.1 kB/1,204 kB 2%] 68% [Working] Get:38 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 liblapack3 amd64 3.5.0-2ubuntu1 [1,730 kB] 68% [38 liblapack3 16.4 kB/1,730 kB 1%] 78% [Working] Get:39 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 liblapack-dev amd64 3.5.0-2ubuntu1 [1,740 kB] 78% [39 liblapack-dev 17.8 kB/1,740 kB 1%] 87% [Working] Get:40 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libmagick++-dev amd64 8:6.7.7.10-6ubuntu3.9 [130 kB] 88% [40 libmagick++-dev 32.8 kB/130 kB 25%] 88% [Working] Get:41 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/universe amd64 libssh2-1-dev amd64 1.4.3-2ubuntu0.1 [229 kB] 89% [41 libssh2-1-dev 8,192 B/229 kB 4%] 90% [Working] Get:42 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libtext-unidecode-perl all 0.04-2 [115 kB] 90% [42 libtext-unidecode-perl 9,600 B/115 kB 8%] 91% [Working] Get:43 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libxml-namespacesupport-perl all 1.11-1 [13.2 kB] 91% [43 libxml-namespacesupport-perl 13.2 kB/13.2 kB 100%] 92% [Waiting for headers] Get:44 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libxml-sax-base-perl all 1.07-1 [21.5 kB] 92% [44 libxml-sax-base-perl 21.5 kB/21.5 kB 100%] 92% [Working] Get:45 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libxml-sax-perl all 0.99+dfsg-2ubuntu1 [64.6 kB] 92% [45 libxml-sax-perl 9,600 B/64.6 kB 15%] 93% [Working] Get:46 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libxml-libxml-perl amd64 2.0108+dfsg-1ubuntu0.1 [337 kB] 93% [46 libxml-libxml-perl 8,192 B/337 kB 2%] 95% [Working] Get:47 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 qpdf amd64 5.1.1-1 [207 kB] 95% [47 qpdf 24.6 kB/207 kB 12%] 97% [Working] Get:48 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 texinfo amd64 5.2.0.dfsg.1-2 [561 kB] 97% [48 texinfo 9,600 B/561 kB 2%] 100% [Working] Fetched 15.1 MB in 0s (37.8 MB/s) Extracting templates from packages: 62% Extracting templates from packages: 100% Selecting previously unselected package libgfortran3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 96857 files and directories currently installed.) Preparing to unpack .../libgfortran3_4.8.4-2ubuntu1~14.04.3_amd64.deb ... Unpacking libgfortran3:amd64 (4.8.4-2ubuntu1~14.04.3) ... Selecting previously unselected package libmagick++5:amd64. Preparing to unpack .../libmagick++5_8%3a6.7.7.10-6ubuntu3.9_amd64.deb ... Unpacking libmagick++5:amd64 (8:6.7.7.10-6ubuntu3.9) ... Selecting previously unselected package libqpdf13:amd64. Preparing to unpack .../libqpdf13_5.1.1-1_amd64.deb ... Unpacking libqpdf13:amd64 (5.1.1-1) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../libssh2-1_1.4.3-2ubuntu0.1_amd64.deb ... Unpacking libssh2-1:amd64 (1.4.3-2ubuntu0.1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu2ubuntu1_all.deb ... Unpacking po-debconf (1.0.16+nmu2ubuntu1) ... Selecting previously unselected package dh-apparmor. Preparing to unpack .../dh-apparmor_2.10.95-0ubuntu2.6~14.04.1_all.deb ... Unpacking dh-apparmor (2.10.95-0ubuntu2.6~14.04.1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20131227ubuntu1_all.deb ... Unpacking debhelper (9.20131227ubuntu1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../liburi-perl_1.60-1_all.deb ... Unpacking liburi-perl (1.60-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../libencode-locale-perl_1.03-1_all.deb ... Unpacking libencode-locale-perl (1.03-1) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../libhttp-date-perl_6.02-1_all.deb ... Unpacking libhttp-date-perl (6.02-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../libfile-listing-perl_6.04-1_all.deb ... Unpacking libfile-listing-perl (6.04-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../libhtml-tagset-perl_3.20-2_all.deb ... Unpacking libhtml-tagset-perl (3.20-2) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../libhtml-parser-perl_3.71-1build1_amd64.deb ... Unpacking libhtml-parser-perl (3.71-1build1) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../libhtml-tree-perl_5.03-1_all.deb ... Unpacking libhtml-tree-perl (5.03-1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../libio-html-perl_1.00-1_all.deb ... Unpacking libio-html-perl (1.00-1) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../liblwp-mediatypes-perl_6.02-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.02-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../libhttp-message-perl_6.06-1_all.deb ... Unpacking libhttp-message-perl (6.06-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../libhttp-cookies-perl_6.00-2_all.deb ... Unpacking libhttp-cookies-perl (6.00-2) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../libhttp-negotiate-perl_6.00-2_all.deb ... Unpacking libhttp-negotiate-perl (6.00-2) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../libnet-ssleay-perl_1.58-1_amd64.deb ... Unpacking libnet-ssleay-perl (1.58-1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../libio-socket-ssl-perl_1.965-1ubuntu1_all.deb ... Unpacking libio-socket-ssl-perl (1.965-1ubuntu1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../libnet-http-perl_6.06-1_all.deb ... Unpacking libnet-http-perl (6.06-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../liblwp-protocol-https-perl_6.04-2ubuntu0.1_all.deb ... Unpacking liblwp-protocol-https-perl (6.04-2ubuntu0.1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../libwww-robotrules-perl_6.01-1_all.deb ... Unpacking libwww-robotrules-perl (6.01-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../libwww-perl_6.05-2_all.deb ... Unpacking libwww-perl (6.05-2) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../libxml-parser-perl_2.41-1build3_amd64.deb ... Unpacking libxml-parser-perl (2.41-1build3) ... Selecting previously unselected package intltool. Preparing to unpack .../intltool_0.50.2-2_all.deb ... Unpacking intltool (0.50.2-2) ... Selecting previously unselected package dh-translations. Preparing to unpack .../dh-translations_121_all.deb ... Unpacking dh-translations (121) ... Selecting previously unselected package python-scour. Preparing to unpack .../python-scour_0.26-3build1_all.deb ... Unpacking python-scour (0.26-3build1) ... Selecting previously unselected package cdbs. Preparing to unpack .../cdbs_0.4.122ubuntu2_all.deb ... Unpacking cdbs (0.4.122ubuntu2) ... Selecting previously unselected package libgfortran-4.8-dev:amd64. Preparing to unpack .../libgfortran-4.8-dev_4.8.4-2ubuntu1~14.04.3_amd64.deb ... Unpacking libgfortran-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04.3) ... Selecting previously unselected package gfortran-4.8. Preparing to unpack .../gfortran-4.8_4.8.4-2ubuntu1~14.04.3_amd64.deb ... Unpacking gfortran-4.8 (4.8.4-2ubuntu1~14.04.3) ... Selecting previously unselected package gfortran. Preparing to unpack .../gfortran_4%3a4.8.2-1ubuntu6_amd64.deb ... Unpacking gfortran (4:4.8.2-1ubuntu6) ... Selecting previously unselected package libblas3. Preparing to unpack .../libblas3_1.2.20110419-7_amd64.deb ... Unpacking libblas3 (1.2.20110419-7) ... Selecting previously unselected package libblas-dev. Preparing to unpack .../libblas-dev_1.2.20110419-7_amd64.deb ... Unpacking libblas-dev (1.2.20110419-7) ... Selecting previously unselected package libintl-perl. Preparing to unpack .../libintl-perl_1.23-1build1_all.deb ... Unpacking libintl-perl (1.23-1build1) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.5.0-2ubuntu1_amd64.deb ... Unpacking liblapack3 (3.5.0-2ubuntu1) ... Selecting previously unselected package liblapack-dev. Preparing to unpack .../liblapack-dev_3.5.0-2ubuntu1_amd64.deb ... Unpacking liblapack-dev (3.5.0-2ubuntu1) ... Selecting previously unselected package libmagick++-dev. Preparing to unpack .../libmagick++-dev_8%3a6.7.7.10-6ubuntu3.9_amd64.deb ... Unpacking libmagick++-dev (8:6.7.7.10-6ubuntu3.9) ... Selecting previously unselected package libssh2-1-dev:amd64. Preparing to unpack .../libssh2-1-dev_1.4.3-2ubuntu0.1_amd64.deb ... Unpacking libssh2-1-dev:amd64 (1.4.3-2ubuntu0.1) ... Selecting previously unselected package libtext-unidecode-perl. Preparing to unpack .../libtext-unidecode-perl_0.04-2_all.deb ... Unpacking libtext-unidecode-perl (0.04-2) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../libxml-namespacesupport-perl_1.11-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.11-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../libxml-sax-base-perl_1.07-1_all.deb ... Unpacking libxml-sax-base-perl (1.07-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../libxml-sax-perl_0.99+dfsg-2ubuntu1_all.deb ... Unpacking libxml-sax-perl (0.99+dfsg-2ubuntu1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../libxml-libxml-perl_2.0108+dfsg-1ubuntu0.1_amd64.deb ... Unpacking libxml-libxml-perl (2.0108+dfsg-1ubuntu0.1) ... Selecting previously unselected package qpdf. Preparing to unpack .../qpdf_5.1.1-1_amd64.deb ... Unpacking qpdf (5.1.1-1) ... Selecting previously unselected package texinfo. Preparing to unpack .../texinfo_5.2.0.dfsg.1-2_amd64.deb ... Unpacking texinfo (5.2.0.dfsg.1-2) ... Processing triggers for man-db (2.6.7.1-1ubuntu1) ... Processing triggers for ccache (3.1.9-1) ... Updating symlinks in /usr/lib/ccache ... Setting up libgfortran3:amd64 (4.8.4-2ubuntu1~14.04.3) ... Setting up libmagick++5:amd64 (8:6.7.7.10-6ubuntu3.9) ... Setting up libqpdf13:amd64 (5.1.1-1) ... Setting up libssh2-1:amd64 (1.4.3-2ubuntu0.1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.10.95-0ubuntu2.6~14.04.1) ... Setting up debhelper (9.20131227ubuntu1) ... Setting up liburi-perl (1.60-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1build1) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.00-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.58-1) ... Setting up libio-socket-ssl-perl (1.965-1ubuntu1) ... Setting up libnet-http-perl (6.06-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python-scour (0.26-3build1) ... Setting up libgfortran-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04.3) ... Setting up gfortran-4.8 (4.8.4-2ubuntu1~14.04.3) ... Setting up gfortran (4:4.8.2-1ubuntu6) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode Setting up libblas3 (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libintl-perl (1.23-1build1) ... Setting up liblapack3 (3.5.0-2ubuntu1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.5.0-2ubuntu1) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libmagick++-dev (8:6.7.7.10-6ubuntu3.9) ... Setting up libssh2-1-dev:amd64 (1.4.3-2ubuntu0.1) ... Setting up libtext-unidecode-perl (0.04-2) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2ubuntu1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0108+dfsg-1ubuntu0.1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up qpdf (5.1.1-1) ... Setting up texinfo (5.2.0.dfsg.1-2) ... Setting up liblwp-protocol-https-perl (6.04-2ubuntu0.1) ... Setting up libwww-perl (6.05-2) ... Setting up libxml-parser-perl (2.41-1build3) ... Setting up intltool (0.50.2-2) ... Setting up dh-translations (121) ... Setting up cdbs (0.4.122ubuntu2) ... Processing triggers for libc-bin (2.19-0ubuntu6.13) ... travis_time:end:03ce6400:start=1508595317738403716,finish=1508595328544061695,duration=10805657979 travis_time:start:0be1d400 $ curl -fLo /tmp/R-3.4.2-$(lsb_release -cs).xz https://s3.amazonaws.com/rstudio-travis/R-3.4.2-$(lsb_release -cs).xz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 2 44.4M 2 1120k 0 0 1531k 0 0:00:29 --:--:-- 0:00:29 1530k 12 44.4M 12 5642k 0 0 3281k 0 0:00:13 0:00:01 0:00:12 3280k 27 44.4M 27 12.4M 0 0 4695k 0 0:00:09 0:00:02 0:00:07 4695k 35 44.4M 35 15.9M 0 0 4394k 0 0:00:10 0:00:03 0:00:07 4393k 45 44.4M 45 20.4M 0 0 4422k 0 0:00:10 0:00:04 0:00:06 4422k 57 44.4M 57 25.7M 0 0 4610k 0 0:00:09 0:00:05 0:00:04 5061k 68 44.4M 68 30.2M 0 0 4626k 0 0:00:09 0:00:06 0:00:03 5089k 75 44.4M 75 33.5M 0 0 4457k 0 0:00:10 0:00:07 0:00:03 4328k 83 44.4M 83 37.1M 0 0 4369k 0 0:00:10 0:00:08 0:00:02 4350k 90 44.4M 90 40.1M 0 0 4231k 0 0:00:10 0:00:09 0:00:01 4050k 100 44.4M 100 44.4M 0 0 4327k 0 0:00:10 0:00:10 --:--:-- 3992k travis_time:end:0be1d400:start=1508595328548806983,finish=1508595339164358004,duration=10615551021 travis_time:start:01991208 $ tar xJf /tmp/R-3.4.2-$(lsb_release -cs).xz -C ~ travis_time:end:01991208:start=1508595339169735080,finish=1508595342698167418,duration=3528432338 $ rm /tmp/R-3.4.2-$(lsb_release -cs).xz travis_time:start:06fb05ec $ sudo mkdir -p /usr/local/lib/R/site-library $R_LIBS_USER travis_time:end:06fb05ec:start=1508595342750638398,finish=1508595342760775520,duration=10137122 travis_time:start:0c4650b0 $ sudo chmod 2777 /usr/local/lib/R /usr/local/lib/R/site-library $R_LIBS_USER travis_time:end:0c4650b0:start=1508595342765120175,finish=1508595342773786118,duration=8665943 travis_time:start:013af0e3 $ echo 'options(repos = c(CRAN = "https://cloud.r-project.org"))' > ~/.Rprofile.site travis_time:end:013af0e3:start=1508595342778580433,finish=1508595342782238479,duration=3658046 travis_time:start:22c9bdc8 $ curl -fLo /tmp/pandoc-1.15.2-1-amd64.deb https://github.com/jgm/pandoc/releases/download/1.15.2/pandoc-1.15.2-1-amd64.deb % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 613 0 613 0 0 3625 0 --:--:-- --:--:-- --:--:-- 3692 1 18.8M 1 219k 0 0 391k 0 0:00:49 --:--:-- 0:00:49 391k 34 18.8M 34 6645k 0 0 4273k 0 0:00:04 0:00:01 0:00:03 6458k 63 18.8M 63 12.0M 0 0 4820k 0 0:00:04 0:00:02 0:00:02 6059k 88 18.8M 88 16.8M 0 0 4823k 0 0:00:04 0:00:03 0:00:01 5649k 100 18.8M 100 18.8M 0 0 4803k 0 0:00:04 0:00:04 --:--:-- 5516k travis_time:end:22c9bdc8:start=1508595342786541692,finish=1508595346828397327,duration=4041855635 travis_time:start:0d6e55e7 $ sudo dpkg -i /tmp/pandoc-1.15.2-1-amd64.deb Selecting previously unselected package pandoc. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 99061 files and directories currently installed.) Preparing to unpack /tmp/pandoc-1.15.2-1-amd64.deb ... Unpacking pandoc (1.15.2-1) ... Setting up pandoc (1.15.2-1) ... Processing triggers for man-db (2.6.7.1-1ubuntu1) ... travis_time:end:0d6e55e7:start=1508595346833402269,finish=1508595348411309919,duration=1577907650 travis_time:start:2be53ad5 $ sudo apt-get install -f Reading package lists... 0% Reading package lists... 0% Reading package lists... 8% Reading package lists... Done Building dependency tree... 0% Building dependency tree... 0% Building dependency tree... 50% Building dependency tree... 50% Building dependency tree Reading state information... 0% Reading state information... 0% Reading state information... Done 0 upgraded, 0 newly installed, 0 to remove and 96 not upgraded. travis_time:end:2be53ad5:start=1508595348416083773,finish=1508595349250086969,duration=834003196 $ rm /tmp/pandoc-1.15.2-1-amd64.deb travis_fold:end:R-install travis_fold:start:git.checkout travis_time:start:0cf25c5d $ git clone --depth=50 --branch=master https://github.com/dorianps/LESYMAP.git dorianps/LESYMAP Cloning into 'dorianps/LESYMAP'... remote: Counting objects: 519, done. remote: Compressing objects: 0% (1/218)  remote: Compressing objects: 1% (3/218)  remote: Compressing objects: 2% (5/218)  remote: Compressing objects: 3% (7/218)  remote: Compressing objects: 4% (9/218)  remote: Compressing objects: 5% (11/218)  remote: Compressing objects: 6% (14/218)  remote: Compressing objects: 7% (16/218)  remote: Compressing objects: 8% (18/218)  remote: Compressing objects: 9% (20/218)  remote: Compressing objects: 10% (22/218)  remote: Compressing objects: 11% (24/218)  remote: Compressing objects: 12% (27/218)  remote: Compressing objects: 13% (29/218)  remote: Compressing objects: 14% (31/218)  remote: Compressing objects: 15% (33/218)  remote: Compressing objects: 16% (35/218) remote: Compressing objects: 17% (38/218)  remote: Compressing objects: 18% (40/218)  remote: Compressing objects: 19% (42/218)  remote: Compressing objects: 20% (44/218)  remote: Compressing objects: 21% (46/218)  remote: Compressing objects: 22% (48/218)  remote: Compressing objects: 23% (51/218)  remote: Compressing objects: 24% (53/218)  remote: Compressing objects: 25% (55/218)  remote: Compressing objects: 26% (57/218)  remote: Compressing objects: 27% (59/218)  remote: Compressing objects: 28% (62/218)  remote: Compressing objects: 29% (64/218)  remote: Compressing objects: 30% (66/218)  remote: Compressing objects: 31% (68/218)  remote: Compressing objects: 32% (70/218)  remote: Compressing objects: 33% (72/218)  remote: Compressing objects: 34% (75/218)  remote: Compressing objects: 35% (77/218)  remote: Compressing objects: 36% (79/218)  remote: Compressing objects: 37% (81/218)  remote: Compressing objects: 38% (83/218)  remote: Compressing objects: 39% (86/218)  remote: Compressing objects: 40% (88/218)  remote: Compressing objects: 41% (90/218)  remote: Compressing objects: 42% (92/218)  remote: Compressing objects: 43% (94/218)  remote: Compressing objects: 44% (96/218)  remote: Compressing objects: 45% (99/218)  remote: Compressing objects: 46% (101/218)  remote: Compressing objects: 47% (103/218)  remote: Compressing objects: 48% (105/218)  remote: Compressing objects: 49% (107/218)  remote: Compressing objects: 50% (109/218)  remote: Compressing objects: 51% (112/218)  remote: Compressing objects: 52% (114/218)  remote: Compressing objects: 53% (116/218)  remote: Compressing objects: 54% (118/218)  remote: Compressing objects: 55% (120/218)  remote: Compressing objects: 56% (123/218)  remote: Compressing objects: 57% (125/218)  remote: Compressing objects: 58% (127/218)  remote: Compressing objects: 59% (129/218)  remote: Compressing objects: 60% (131/218)  remote: Compressing objects: 61% (133/218)  remote: Compressing objects: 62% (136/218)  remote: Compressing objects: 63% (138/218)  remote: Compressing objects: 64% (140/218)  remote: Compressing objects: 65% (142/218)  remote: Compressing objects: 66% (144/218)  remote: Compressing objects: 67% (147/218)  remote: Compressing objects: 68% (149/218)  remote: Compressing objects: 69% (151/218)  remote: Compressing objects: 70% (153/218)  remote: Compressing objects: 71% (155/218)  remote: Compressing objects: 72% (157/218)  remote: Compressing objects: 73% (160/218)  remote: Compressing objects: 74% (162/218)  remote: Compressing objects: 75% (164/218)  remote: Compressing objects: 76% (166/218)  remote: Compressing objects: 77% (168/218)  remote: Compressing objects: 78% (171/218)  remote: Compressing objects: 79% (173/218)  remote: Compressing objects: 80% (175/218)  remote: Compressing objects: 81% (177/218)  remote: Compressing objects: 82% (179/218)  remote: Compressing objects: 83% (181/218)  remote: Compressing objects: 84% (184/218)  remote: Compressing objects: 85% (186/218)  remote: Compressing objects: 86% (188/218)  remote: Compressing objects: 87% (190/218)  remote: Compressing objects: 88% (192/218)  remote: Compressing objects: 89% (195/218)  remote: Compressing objects: 90% (197/218)  remote: Compressing objects: 91% (199/218)  remote: Compressing objects: 92% (201/218)  remote: Compressing objects: 93% (203/218)  remote: Compressing objects: 94% (205/218)  remote: Compressing objects: 95% (208/218)  remote: Compressing objects: 96% (210/218)  remote: Compressing objects: 97% (212/218)  remote: Compressing objects: 98% (214/218)  remote: Compressing objects: 99% (216/218)  remote: Compressing objects: 100% (218/218)  remote: Compressing objects: 100% (218/218), done. Receiving objects: 0% (1/519) Receiving objects: 1% (6/519) Receiving objects: 2% (11/519) Receiving objects: 3% (16/519) Receiving objects: 4% (21/519) Receiving objects: 5% (26/519) Receiving objects: 6% (32/519) Receiving objects: 7% (37/519) Receiving objects: 8% (42/519) Receiving objects: 9% (47/519) Receiving objects: 10% (52/519) Receiving objects: 11% (58/519) Receiving objects: 12% (63/519) Receiving objects: 13% (68/519) Receiving objects: 14% (73/519) Receiving objects: 15% (78/519) Receiving objects: 16% (84/519) Receiving objects: 17% (89/519) Receiving objects: 18% (94/519) Receiving objects: 19% (99/519) Receiving objects: 20% (104/519) Receiving objects: 21% (109/519) Receiving objects: 22% (115/519) Receiving objects: 23% (120/519) Receiving objects: 24% (125/519) Receiving objects: 25% (130/519) Receiving objects: 26% (135/519) Receiving objects: 27% (141/519) Receiving objects: 28% (146/519) Receiving objects: 29% (151/519) Receiving objects: 30% (156/519) Receiving objects: 31% (161/519) Receiving objects: 32% (167/519) Receiving objects: 33% (172/519) Receiving objects: 34% (177/519) Receiving objects: 35% (182/519) Receiving objects: 36% (187/519) Receiving objects: 37% (193/519) Receiving objects: 38% (198/519) Receiving objects: 39% (203/519) Receiving objects: 40% (208/519) Receiving objects: 41% (213/519) Receiving objects: 42% (218/519) Receiving objects: 43% (224/519) Receiving objects: 44% (229/519) Receiving objects: 45% (234/519) Receiving objects: 46% (239/519) Receiving objects: 47% (244/519) Receiving objects: 48% (250/519) Receiving objects: 49% (255/519) Receiving objects: 50% (260/519) Receiving objects: 51% (265/519) Receiving objects: 52% (270/519) Receiving objects: 53% (276/519) Receiving objects: 54% (281/519) Receiving objects: 55% (286/519) Receiving objects: 56% (291/519) Receiving objects: 57% (296/519) Receiving objects: 58% (302/519) Receiving objects: 59% (307/519) Receiving objects: 60% (312/519) Receiving objects: 61% (317/519) Receiving objects: 62% (322/519) Receiving objects: 63% (327/519) Receiving objects: 64% (333/519) Receiving objects: 65% (338/519) Receiving objects: 66% (343/519) Receiving objects: 67% (348/519) Receiving objects: 68% (353/519) Receiving objects: 69% (359/519) Receiving objects: 70% (364/519) Receiving objects: 71% (369/519) Receiving objects: 72% (374/519) Receiving objects: 73% (379/519) Receiving objects: 74% (385/519) Receiving objects: 75% (390/519) Receiving objects: 76% (395/519) Receiving objects: 77% (400/519) Receiving objects: 78% (405/519) Receiving objects: 79% (411/519) Receiving objects: 80% (416/519) Receiving objects: 81% (421/519) Receiving objects: 82% (426/519) Receiving objects: 83% (431/519) Receiving objects: 84% (436/519) Receiving objects: 85% (442/519) Receiving objects: 86% (447/519) Receiving objects: 87% (452/519) Receiving objects: 88% (457/519) Receiving objects: 89% (462/519) Receiving objects: 90% (468/519) Receiving objects: 91% (473/519) Receiving objects: 92% (478/519) remote: Total 519 (delta 318), reused 471 (delta 295), pack-reused 0 Receiving objects: 93% (483/519) Receiving objects: 94% (488/519) Receiving objects: 95% (494/519) Receiving objects: 96% (499/519) Receiving objects: 97% (504/519) Receiving objects: 98% (509/519) Receiving objects: 99% (514/519) Receiving objects: 100% (519/519) Receiving objects: 100% (519/519), 5.57 MiB | 17.92 MiB/s, done. Resolving deltas: 0% (0/318) Resolving deltas: 3% (11/318) Resolving deltas: 7% (23/318) Resolving deltas: 12% (41/318) Resolving deltas: 13% (42/318) Resolving deltas: 15% (49/318) Resolving deltas: 19% (61/318) Resolving deltas: 25% (81/318) Resolving deltas: 32% (103/318) Resolving deltas: 33% (108/318) Resolving deltas: 34% (109/318) Resolving deltas: 35% (112/318) Resolving deltas: 36% (116/318) Resolving deltas: 37% (118/318) Resolving deltas: 38% (121/318) Resolving deltas: 39% (125/318) Resolving deltas: 40% (129/318) Resolving deltas: 41% (131/318) Resolving deltas: 42% (134/318) Resolving deltas: 43% (138/318) Resolving deltas: 44% (140/318) Resolving deltas: 45% (145/318) Resolving deltas: 55% (176/318) Resolving deltas: 57% (184/318) Resolving deltas: 61% (194/318) Resolving deltas: 62% (198/318) Resolving deltas: 67% (215/318) Resolving deltas: 71% (226/318) Resolving deltas: 72% (230/318) Resolving deltas: 73% (235/318) Resolving deltas: 76% (243/318) Resolving deltas: 79% (252/318) Resolving deltas: 80% (255/318) Resolving deltas: 83% (264/318) Resolving deltas: 84% (269/318) Resolving deltas: 85% (271/318) Resolving deltas: 86% (274/318) Resolving deltas: 87% (277/318) Resolving deltas: 88% (281/318) Resolving deltas: 89% (286/318) Resolving deltas: 90% (289/318) Resolving deltas: 91% (290/318) Resolving deltas: 92% (293/318) Resolving deltas: 94% (300/318) Resolving deltas: 95% (303/318) Resolving deltas: 96% (306/318) Resolving deltas: 97% (309/318) Resolving deltas: 98% (312/318) Resolving deltas: 99% (315/318) Resolving deltas: 100% (318/318) Resolving deltas: 100% (318/318), done. travis_time:end:0cf25c5d:start=1508595349260034927,finish=1508595350196331608,duration=936296681 $ cd dorianps/LESYMAP $ git checkout -qf 41da492db8841c7c4d7c0d255545087af5658609 travis_fold:end:git.checkout travis_fold:start:R-session-info R session information $ Rscript -e 'sessionInfo()' R version 3.4.2 (2017-01-27) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.04.5 LTS Matrix products: default BLAS: /home/travis/R-bin/lib/R/lib/libRblas.so LAPACK: /home/travis/R-bin/lib/R/lib/libRlapack.so locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets base loaded via a namespace (and not attached): [1] compiler_3.4.2 travis_fold:end:R-session-info travis_fold:start:before_install.1 travis_time:start:0dbc2bf6 $ export itkrrel=0.4.12 travis_time:end:0dbc2bf6:start=1508595350404710665,finish=1508595350408491875,duration=3781210 travis_fold:end:before_install.1 travis_fold:start:before_install.2 travis_time:start:066c8f5f $ export gh_user=stnava travis_time:end:066c8f5f:start=1508595350413206619,finish=1508595350417191271,duration=3984652 travis_fold:end:before_install.2 travis_fold:start:before_install.3 travis_time:start:29e4ff85 $ export ANTsRCorerel=0.4.2.1 travis_time:end:29e4ff85:start=1508595350422034506,finish=1508595350426005554,duration=3971048 travis_fold:end:before_install.3 travis_fold:start:before_install.4 travis_time:start:2bda146a $ export reldir=latest travis_time:end:2bda146a:start=1508595350430792601,finish=1508595350434786012,duration=3993411 travis_fold:end:before_install.4 travis_fold:start:before_install.5 travis_time:start:073d5636 $ export antsrrel=0.6.1 travis_time:end:073d5636:start=1508595350439535187,finish=1508595350443427641,duration=3892454 travis_fold:end:before_install.5 travis_fold:start:before_install.6 travis_time:start:12e0dc5a $ wget -O antsr_travis.sh http://bit.ly/antsr_travis_sh --2017-10-21 14:15:50-- http://bit.ly/antsr_travis_sh Resolving bit.ly (bit.ly)... 67.199.248.11, 67.199.248.10 Connecting to bit.ly (bit.ly)|67.199.248.11|:80... connected. HTTP request sent, awaiting response... 301 Moved Permanently Location: https://gist.githubusercontent.com/muschellij2/183aca6ea4d326db549cdcc28e1ff395/raw/ [following] --2017-10-21 14:15:50-- https://gist.githubusercontent.com/muschellij2/183aca6ea4d326db549cdcc28e1ff395/raw/ Resolving gist.githubusercontent.com (gist.githubusercontent.com)... 151.101.0.133, 151.101.64.133, 151.101.128.133, ... Connecting to gist.githubusercontent.com (gist.githubusercontent.com)|151.101.0.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 817 [text/plain] Saving to: ‘antsr_travis.sh’ 0% [ ] 0 --.-K/s 100%[======================================>] 817 --.-K/s in 0s 2017-10-21 14:15:50 (168 MB/s) - ‘antsr_travis.sh’ saved [817/817] travis_time:end:12e0dc5a:start=1508595350448146074,finish=1508595350712187192,duration=264041118 travis_fold:end:before_install.6 travis_fold:start:before_install.7 travis_time:start:0588d1dc $ chmod +x antsr_travis.sh travis_time:end:0588d1dc:start=1508595350717219725,finish=1508595350722508315,duration=5288590 travis_fold:end:before_install.7 travis_fold:start:before_install.8 travis_time:start:047b0aee $ . ./antsr_travis.sh --2017-10-21 14:15:50-- http://bit.ly/travis_helpers Resolving bit.ly (bit.ly)... 67.199.248.11, 67.199.248.10 Connecting to bit.ly (bit.ly)|67.199.248.11|:80... connected. HTTP request sent, awaiting response... 301 Moved Permanently Location: https://gist.githubusercontent.com/muschellij2/64f9104ccec09deb85d4928071b3c9e8/raw [following] --2017-10-21 14:15:50-- https://gist.githubusercontent.com/muschellij2/64f9104ccec09deb85d4928071b3c9e8/raw Resolving gist.githubusercontent.com (gist.githubusercontent.com)... 151.101.0.133, 151.101.64.133, 151.101.128.133, ... Connecting to gist.githubusercontent.com (gist.githubusercontent.com)|151.101.0.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 12484 (12K) [text/plain] Saving to: ‘travis_helpers.sh’ 0% [ ] 0 --.-K/s 100%[======================================>] 12,484 --.-K/s in 0.001s 2017-10-21 14:15:50 (13.5 MB/s) - ‘travis_helpers.sh’ saved [12484/12484] R version 3.4.2 (2017-01-27) -- "Short Summer" Copyright (C) 2017 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under the terms of the GNU General Public License versions 2 or 3. For more information about these matters see http://www.gnu.org/licenses/. CI is true Inside a CI service Installing package into ‘/usr/local/lib/R/site-library’ (as ‘lib’ is unspecified) also installing the dependencies ‘mime’, ‘curl’, ‘openssl’, ‘R6’, ‘httr’, ‘memoise’, ‘whisker’, ‘digest’, ‘rstudioapi’, ‘jsonlite’, ‘git2r’, ‘withr’ trying URL 'http://cran.rstudio.com/src/contrib/mime_0.5.tar.gz' Content type 'application/x-gzip' length 12634 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'http://cran.rstudio.com/src/contrib/curl_3.0.tar.gz' Content type 'application/x-gzip' length 412212 bytes (402 KB) ================================================== downloaded 402 KB trying URL 'http://cran.rstudio.com/src/contrib/openssl_0.9.7.tar.gz' Content type 'application/x-gzip' length 1243577 bytes (1.2 MB) ================================================== downloaded 1.2 MB trying URL 'http://cran.rstudio.com/src/contrib/R6_2.2.2.tar.gz' Content type 'application/x-gzip' length 322959 bytes (315 KB) ================================================== downloaded 315 KB trying URL 'http://cran.rstudio.com/src/contrib/httr_1.3.1.tar.gz' Content type 'application/x-gzip' length 147593 bytes (144 KB) ================================================== downloaded 144 KB trying URL 'http://cran.rstudio.com/src/contrib/memoise_1.1.0.tar.gz' Content type 'application/x-gzip' length 11025 bytes (10 KB) ================================================== downloaded 10 KB trying URL 'http://cran.rstudio.com/src/contrib/whisker_0.3-2.tar.gz' Content type 'application/x-gzip' length 27707 bytes (27 KB) ================================================== downloaded 27 KB trying URL 'http://cran.rstudio.com/src/contrib/digest_0.6.12.tar.gz' Content type 'application/x-gzip' length 120337 bytes (117 KB) ================================================== downloaded 117 KB trying URL 'http://cran.rstudio.com/src/contrib/rstudioapi_0.7.tar.gz' Content type 'application/x-gzip' length 39845 bytes (38 KB) ================================================== downloaded 38 KB trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.5.tar.gz' Content type 'application/x-gzip' length 1096810 bytes (1.0 MB) ================================================== downloaded 1.0 MB trying URL 'http://cran.rstudio.com/src/contrib/git2r_0.19.0.tar.gz' Content type 'application/x-gzip' length 1155950 bytes (1.1 MB) ================================================== downloaded 1.1 MB trying URL 'http://cran.rstudio.com/src/contrib/withr_2.0.0.tar.gz' Content type 'application/x-gzip' length 16956 bytes (16 KB) ================================================== downloaded 16 KB trying URL 'http://cran.rstudio.com/src/contrib/devtools_1.13.3.tar.gz' Content type 'application/x-gzip' length 486402 bytes (475 KB) ================================================== downloaded 475 KB * installing *source* package ‘mime’ ... ** package ‘mime’ successfully unpacked and MD5 sums checked ** libs gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c rawmatch.c -o rawmatch.o gcc -std=gnu99 -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o mime.so rawmatch.o -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/mime/libs ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (mime) * installing *source* package ‘curl’ ... ** package ‘curl’ successfully unpacked and MD5 sums checked Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-lcurl ** libs rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o utils.o version.o winidn.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c callbacks.c -o callbacks.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c curl.c -o curl.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c download.c -o download.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c escape.c -o escape.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c fetch.c -o fetch.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c form.c -o form.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c getdate.c -o getdate.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c handle.c -o handle.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c ieproxy.c -o ieproxy.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c interrupt.c -o interrupt.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c multi.c -o multi.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c nslookup.c -o nslookup.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c reflist.c -o reflist.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c split.c -o split.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c ssl.c -o ssl.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c utils.c -o utils.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c version.c -o version.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c winidn.c -o winidn.o gcc -std=gnu99 -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o utils.o version.o winidn.o -lcurl -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/curl/libs ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (curl) * installing *source* package ‘openssl’ ... ** package ‘openssl’ successfully unpacked and MD5 sums checked Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-l:libssl.so.1.0.0 -l:libcrypto.so.1.0.0 ** libs rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o openssl.so gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c aes.c -o aes.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c base64.c -o base64.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c bignum.c -o bignum.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c cert.c -o cert.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c compatibility.c -o compatibility.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c diffie.c -o diffie.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c envelope.c -o envelope.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c error.c -o error.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c hash.c -o hash.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c info.c -o info.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c keygen.c -o keygen.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c keys.c -o keys.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c onload.c -o onload.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c openssh.c -o openssh.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c password.c -o password.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c pem.c -o pem.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c pkcs12.c -o pkcs12.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c pkcs7.c -o pkcs7.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c rand.c -o rand.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c rsa.c -o rsa.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c signing.c -o signing.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c ssl.c -o ssl.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c stream.c -o stream.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c write.c -o write.o gcc -std=gnu99 -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o -l:libssl.so.1.0.0 -l:libcrypto.so.1.0.0 -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/openssl/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (openssl) * installing *source* package ‘R6’ ... ** package ‘R6’ successfully unpacked and MD5 sums checked ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (R6) * installing *source* package ‘whisker’ ... ** package ‘whisker’ successfully unpacked and MD5 sums checked ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (whisker) * installing *source* package ‘digest’ ... ** package ‘digest’ successfully unpacked and MD5 sums checked ** libs gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c aes.c -o aes.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c crc32.c -o crc32.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c digest.c -o digest.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c md5.c -o md5.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c pmurhash.c -o pmurhash.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c raes.c -o raes.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c sha1.c -o sha1.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c sha2.c -o sha2.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c sha256.c -o sha256.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c xxhash.c -o xxhash.o gcc -std=gnu99 -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o digest.so aes.o crc32.o digest.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o xxhash.o -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/digest/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (digest) * installing *source* package ‘rstudioapi’ ... ** package ‘rstudioapi’ successfully unpacked and MD5 sums checked ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rstudioapi) * installing *source* package ‘jsonlite’ ... ** package ‘jsonlite’ successfully unpacked and MD5 sums checked ** libs gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c base64.c -o base64.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c collapse_array.c -o collapse_array.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c collapse_object.c -o collapse_object.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c collapse_pretty.c -o collapse_pretty.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c escape_chars.c -o escape_chars.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c integer64_to_na.c -o integer64_to_na.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c is_datelist.c -o is_datelist.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c is_recordlist.c -o is_recordlist.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c is_scalarlist.c -o is_scalarlist.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c modp_numtoa.c -o modp_numtoa.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c null_to_na.c -o null_to_na.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c num_to_char.c -o num_to_char.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c parse.c -o parse.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c prettify.c -o prettify.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c push_parser.c -o push_parser.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c r-base64.c -o r-base64.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c register.c -o register.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c row_collapse.c -o row_collapse.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c transpose_list.c -o transpose_list.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c validate.c -o validate.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c yajl/yajl.c -o yajl/yajl.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c yajl/yajl_buf.c -o yajl/yajl_buf.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c yajl/yajl_encode.c -o yajl/yajl_encode.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c yajl/yajl_gen.c -o yajl/yajl_gen.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c yajl/yajl_lex.c -o yajl/yajl_lex.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c yajl/yajl_parser.c -o yajl/yajl_parser.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -Iyajl/api -I/home/travis/R-bin/include -fpic -g -O2 -c yajl/yajl_tree.c -o yajl/yajl_tree.o ar rcs libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o gcc -std=gnu99 -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -L. -lstatyajl -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/jsonlite/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (jsonlite) * installing *source* package ‘git2r’ ... ** package ‘git2r’ successfully unpacked and MD5 sums checked checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking size of void*... 8 checking for library containing inflate... -lz checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for libssl... yes checking for library containing EVP_EncryptInit... none required checking for library containing SSL_library_init... none required checking for library containing OPENSSL_init_ssl... no checking for library containing libssh2_version... -lssh2 checking for gawk... gawk checking for curl-config... /home/travis/R-bin/bin/curl-config checking for the version of libcurl... 7.43.0 checking whether libcurl is usable... yes checking for curl_free... yes checking for struct stat.st_mtim... yes checking for struct stat.st_mtimespec... no checking for struct stat.st_mtime_nsec... no checking for struct stat.st_mtim.tv_nsec... yes checking for futimens... yes checking for qsort_r... yes checking for qsort_s... no ----- Results of the git2r package configure ----- OpenSSL to talk over HTTPS...........: yes LibSSH2 to enable the SSH transport..: yes -------------------------------------------------- configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r.c -o git2r.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_arg.c -o git2r_arg.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_blame.c -o git2r_blame.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_blob.c -o git2r_blob.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_branch.c -o git2r_branch.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_checkout.c -o git2r_checkout.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_clone.c -o git2r_clone.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_commit.c -o git2r_commit.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_config.c -o git2r_config.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_cred.c -o git2r_cred.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_diff.c -o git2r_diff.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_error.c -o git2r_error.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_graph.c -o git2r_graph.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_index.c -o git2r_index.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_libgit2.c -o git2r_libgit2.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_merge.c -o git2r_merge.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_note.c -o git2r_note.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_object.c -o git2r_object.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_odb.c -o git2r_odb.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_oid.c -o git2r_oid.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_push.c -o git2r_push.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_reference.c -o git2r_reference.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_reflog.c -o git2r_reflog.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_remote.c -o git2r_remote.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_repository.c -o git2r_repository.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_reset.c -o git2r_reset.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_revparse.c -o git2r_revparse.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_revwalk.c -o git2r_revwalk.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_signature.c -o git2r_signature.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_stash.c -o git2r_stash.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_status.c -o git2r_status.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_tag.c -o git2r_tag.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_transfer.c -o git2r_transfer.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c git2r_tree.c -o git2r_tree.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/annotated_commit.c -o libgit2/src/annotated_commit.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/apply.c -o libgit2/src/apply.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/attr_file.c -o libgit2/src/attr_file.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/attr.c -o libgit2/src/attr.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/attrcache.c -o libgit2/src/attrcache.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/blame_git.c -o libgit2/src/blame_git.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/blame.c -o libgit2/src/blame.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/blob.c -o libgit2/src/blob.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/branch.c -o libgit2/src/branch.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/buf_text.c -o libgit2/src/buf_text.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/buffer.c -o libgit2/src/buffer.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/cache.c -o libgit2/src/cache.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/checkout.c -o libgit2/src/checkout.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/cherrypick.c -o libgit2/src/cherrypick.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/clone.c -o libgit2/src/clone.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/commit_list.c -o libgit2/src/commit_list.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/commit.c -o libgit2/src/commit.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/config_cache.c -o libgit2/src/config_cache.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/config_file.c -o libgit2/src/config_file.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/config.c -o libgit2/src/config.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/crlf.c -o libgit2/src/crlf.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/curl_stream.c -o libgit2/src/curl_stream.o In file included from /home/travis/R-bin/include/curl/curl.h:2363:0, from libgit2/src/curl_stream.c:10: libgit2/src/curl_stream.c: In function ‘curls_certificate’: /home/travis/R-bin/include/curl/typecheck-gcc.h:126:42: warning: call to ‘_curl_easy_getinfo_err_curl_slist’ declared with attribute warning: curl_easy_getinfo expects a pointer to struct curl_slist * for this info [enabled by default] _curl_easy_getinfo_err_curl_slist(); \ ^ libgit2/src/curl_stream.c:157:13: note: in expansion of macro ‘curl_easy_getinfo’ if ((res = curl_easy_getinfo(s->handle, CURLINFO_CERTINFO, &certinfo)) != CURLE_OK) ^ gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/date.c -o libgit2/src/date.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/delta.c -o libgit2/src/delta.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/describe.c -o libgit2/src/describe.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/diff_driver.c -o libgit2/src/diff_driver.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/diff_file.c -o libgit2/src/diff_file.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/diff_generate.c -o libgit2/src/diff_generate.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/diff_parse.c -o libgit2/src/diff_parse.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/diff_print.c -o libgit2/src/diff_print.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/diff_stats.c -o libgit2/src/diff_stats.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/diff_tform.c -o libgit2/src/diff_tform.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/diff_xdiff.c -o libgit2/src/diff_xdiff.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/diff.c -o libgit2/src/diff.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/errors.c -o libgit2/src/errors.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/fetch.c -o libgit2/src/fetch.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/fetchhead.c -o libgit2/src/fetchhead.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/filebuf.c -o libgit2/src/filebuf.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/fileops.c -o libgit2/src/fileops.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/filter.c -o libgit2/src/filter.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/fnmatch.c -o libgit2/src/fnmatch.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/global.c -o libgit2/src/global.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/graph.c -o libgit2/src/graph.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/hash.c -o libgit2/src/hash.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/hashsig.c -o libgit2/src/hashsig.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/ident.c -o libgit2/src/ident.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/idxmap.c -o libgit2/src/idxmap.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/ignore.c -o libgit2/src/ignore.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/index.c -o libgit2/src/index.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/indexer.c -o libgit2/src/indexer.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/iterator.c -o libgit2/src/iterator.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/merge_driver.c -o libgit2/src/merge_driver.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/merge_file.c -o libgit2/src/merge_file.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/merge.c -o libgit2/src/merge.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/message.c -o libgit2/src/message.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/mwindow.c -o libgit2/src/mwindow.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/netops.c -o libgit2/src/netops.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/notes.c -o libgit2/src/notes.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/object_api.c -o libgit2/src/object_api.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/object.c -o libgit2/src/object.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/odb_loose.c -o libgit2/src/odb_loose.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/odb_mempack.c -o libgit2/src/odb_mempack.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/odb_pack.c -o libgit2/src/odb_pack.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/odb.c -o libgit2/src/odb.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/offmap.c -o libgit2/src/offmap.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/oid.c -o libgit2/src/oid.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/oidarray.c -o libgit2/src/oidarray.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/oidmap.c -o libgit2/src/oidmap.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/openssl_stream.c -o libgit2/src/openssl_stream.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/pack-objects.c -o libgit2/src/pack-objects.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/pack.c -o libgit2/src/pack.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/patch_generate.c -o libgit2/src/patch_generate.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/patch_parse.c -o libgit2/src/patch_parse.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/patch.c -o libgit2/src/patch.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/path.c -o libgit2/src/path.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/pathspec.c -o libgit2/src/pathspec.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/pool.c -o libgit2/src/pool.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/posix.c -o libgit2/src/posix.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/pqueue.c -o libgit2/src/pqueue.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/proxy.c -o libgit2/src/proxy.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/push.c -o libgit2/src/push.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/rebase.c -o libgit2/src/rebase.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/refdb_fs.c -o libgit2/src/refdb_fs.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/refdb.c -o libgit2/src/refdb.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/reflog.c -o libgit2/src/reflog.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/refs.c -o libgit2/src/refs.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/refspec.c -o libgit2/src/refspec.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/remote.c -o libgit2/src/remote.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/repository.c -o libgit2/src/repository.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/reset.c -o libgit2/src/reset.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/revert.c -o libgit2/src/revert.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/revparse.c -o libgit2/src/revparse.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/revwalk.c -o libgit2/src/revwalk.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/settings.c -o libgit2/src/settings.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/sha1_lookup.c -o libgit2/src/sha1_lookup.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/signature.c -o libgit2/src/signature.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/socket_stream.c -o libgit2/src/socket_stream.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/sortedcache.c -o libgit2/src/sortedcache.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/stash.c -o libgit2/src/stash.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/status.c -o libgit2/src/status.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/strmap.c -o libgit2/src/strmap.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/submodule.c -o libgit2/src/submodule.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/sysdir.c -o libgit2/src/sysdir.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/tag.c -o libgit2/src/tag.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/thread-utils.c -o libgit2/src/thread-utils.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/tls_stream.c -o libgit2/src/tls_stream.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/trace.c -o libgit2/src/trace.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/transaction.c -o libgit2/src/transaction.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/transport.c -o libgit2/src/transport.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/tree-cache.c -o libgit2/src/tree-cache.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/tree.c -o libgit2/src/tree.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/tsort.c -o libgit2/src/tsort.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/util.c -o libgit2/src/util.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/varint.c -o libgit2/src/varint.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/vector.c -o libgit2/src/vector.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/worktree.c -o libgit2/src/worktree.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/zstream.c -o libgit2/src/zstream.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/transports/auth.c -o libgit2/src/transports/auth.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/transports/cred_helpers.c -o libgit2/src/transports/cred_helpers.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/transports/cred.c -o libgit2/src/transports/cred.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/transports/git.c -o libgit2/src/transports/git.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/transports/http.c -o libgit2/src/transports/http.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/transports/local.c -o libgit2/src/transports/local.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/transports/smart_pkt.c -o libgit2/src/transports/smart_pkt.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/transports/smart_protocol.c -o libgit2/src/transports/smart_protocol.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/transports/smart.c -o libgit2/src/transports/smart.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/transports/ssh.c -o libgit2/src/transports/ssh.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/unix/map.c -o libgit2/src/unix/map.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/unix/realpath.c -o libgit2/src/unix/realpath.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/xdiff/xdiffi.c -o libgit2/src/xdiff/xdiffi.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/xdiff/xemit.c -o libgit2/src/xdiff/xemit.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/xdiff/xhistogram.c -o libgit2/src/xdiff/xhistogram.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/xdiff/xmerge.c -o libgit2/src/xdiff/xmerge.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/xdiff/xpatience.c -o libgit2/src/xdiff/xpatience.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/xdiff/xprepare.c -o libgit2/src/xdiff/xprepare.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/src/xdiff/xutils.c -o libgit2/src/xdiff/xutils.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -Ilibgit2/src -Ilibgit2/include -Ilibgit2/deps/http-parser -I/home/travis/R-bin/include -DGIT_ARCH_64 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -DGIT_OPENSSL -DGIT_SHA1_OPENSSL -DGIT_SSH -DGIT_CURL -DGIT_USE_STAT_MTIM -DGIT_USE_NSEC -DHAVE_FUTIMENS -DHAVE_QSORT_R -I/home/travis/R-bin/include -I/home/travis/R-bin/include -fpic -g -O2 -c libgit2/deps/http-parser/http_parser.c -o libgit2/deps/http-parser/http_parser.o ar rcs libmygit.a libgit2/src/annotated_commit.o libgit2/src/apply.o libgit2/src/attr_file.o libgit2/src/attr.o libgit2/src/attrcache.o libgit2/src/blame_git.o libgit2/src/blame.o libgit2/src/blob.o libgit2/src/branch.o libgit2/src/buf_text.o libgit2/src/buffer.o libgit2/src/cache.o libgit2/src/checkout.o libgit2/src/cherrypick.o libgit2/src/clone.o libgit2/src/commit_list.o libgit2/src/commit.o libgit2/src/config_cache.o libgit2/src/config_file.o libgit2/src/config.o libgit2/src/crlf.o libgit2/src/curl_stream.o libgit2/src/date.o libgit2/src/delta.o libgit2/src/describe.o libgit2/src/diff_driver.o libgit2/src/diff_file.o libgit2/src/diff_generate.o libgit2/src/diff_parse.o libgit2/src/diff_print.o libgit2/src/diff_stats.o libgit2/src/diff_tform.o libgit2/src/diff_xdiff.o libgit2/src/diff.o libgit2/src/errors.o libgit2/src/fetch.o libgit2/src/fetchhead.o libgit2/src/filebuf.o libgit2/src/fileops.o libgit2/src/filter.o libgit2/src/fnmatch.o libgit2/src/global.o libgit2/src/graph.o libgit2/src/hash.o libgit2/src/hashsig.o libgit2/src/ident.o libgit2/src/idxmap.o libgit2/src/ignore.o libgit2/src/index.o libgit2/src/indexer.o libgit2/src/iterator.o libgit2/src/merge_driver.o libgit2/src/merge_file.o libgit2/src/merge.o libgit2/src/message.o libgit2/src/mwindow.o libgit2/src/netops.o libgit2/src/notes.o libgit2/src/object_api.o libgit2/src/object.o libgit2/src/odb_loose.o libgit2/src/odb_mempack.o libgit2/src/odb_pack.o libgit2/src/odb.o libgit2/src/offmap.o libgit2/src/oid.o libgit2/src/oidarray.o libgit2/src/oidmap.o libgit2/src/openssl_stream.o libgit2/src/pack-objects.o libgit2/src/pack.o libgit2/src/patch_generate.o libgit2/src/patch_parse.o libgit2/src/patch.o libgit2/src/path.o libgit2/src/pathspec.o libgit2/src/pool.o libgit2/src/posix.o libgit2/src/pqueue.o libgit2/src/proxy.o libgit2/src/push.o libgit2/src/rebase.o libgit2/src/refdb_fs.o libgit2/src/refdb.o libgit2/src/reflog.o libgit2/src/refs.o libgit2/src/refspec.o libgit2/src/remote.o libgit2/src/repository.o libgit2/src/reset.o libgit2/src/revert.o libgit2/src/revparse.o libgit2/src/revwalk.o libgit2/src/settings.o libgit2/src/sha1_lookup.o libgit2/src/signature.o libgit2/src/socket_stream.o libgit2/src/sortedcache.o libgit2/src/stash.o libgit2/src/status.o libgit2/src/strmap.o libgit2/src/submodule.o libgit2/src/sysdir.o libgit2/src/tag.o libgit2/src/thread-utils.o libgit2/src/tls_stream.o libgit2/src/trace.o libgit2/src/transaction.o libgit2/src/transport.o libgit2/src/tree-cache.o libgit2/src/tree.o libgit2/src/tsort.o libgit2/src/util.o libgit2/src/varint.o libgit2/src/vector.o libgit2/src/worktree.o libgit2/src/zstream.o libgit2/src/transports/auth.o libgit2/src/transports/cred_helpers.o libgit2/src/transports/cred.o libgit2/src/transports/git.o libgit2/src/transports/http.o libgit2/src/transports/local.o libgit2/src/transports/smart_pkt.o libgit2/src/transports/smart_protocol.o libgit2/src/transports/smart.o libgit2/src/transports/ssh.o libgit2/src/unix/map.o libgit2/src/unix/realpath.o libgit2/src/xdiff/xdiffi.o libgit2/src/xdiff/xemit.o libgit2/src/xdiff/xhistogram.o libgit2/src/xdiff/xmerge.o libgit2/src/xdiff/xpatience.o libgit2/src/xdiff/xprepare.o libgit2/src/xdiff/xutils.o libgit2/deps/http-parser/http_parser.o gcc -std=gnu99 -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o git2r.so git2r.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -L. -lmygit -lssh2 -lssl -lcrypto -lz -L/home/travis/R-bin/lib -lcurl -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/git2r/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (git2r) * installing *source* package ‘withr’ ... ** package ‘withr’ successfully unpacked and MD5 sums checked ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (withr) * installing *source* package ‘httr’ ... ** package ‘httr’ successfully unpacked and MD5 sums checked ** R ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (httr) * installing *source* package ‘memoise’ ... ** package ‘memoise’ successfully unpacked and MD5 sums checked ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (memoise) * installing *source* package ‘devtools’ ... ** package ‘devtools’ successfully unpacked and MD5 sums checked ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (devtools) The downloaded source packages are in ‘/tmp/RtmploteNZ/downloaded_packages’ Using bundled GitHub PAT. Please add your own PAT to the env var `GITHUB_PAT` Downloading GitHub repo muschellij2/ghtravis@master from URL https://api.github.com/repos/muschellij2/ghtravis/zipball/master Installing ghtravis Using bundled GitHub PAT. Please add your own PAT to the env var `GITHUB_PAT` trying URL 'https://cloud.r-project.org/src/contrib/yaml_2.1.14.tar.gz' Content type 'application/x-gzip' length 81095 bytes (79 KB) ================================================== downloaded 79 KB Installing yaml '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/Rtmp1BMkCc/devtools349e62bb5e52/yaml' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘yaml’ ... ** package ‘yaml’ successfully unpacked and MD5 sums checked ** libs gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c api.c -o api.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c dumper.c -o dumper.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c emitter.c -o emitter.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c implicit.c -o implicit.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c loader.c -o loader.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c parser.c -o parser.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c r-ext.c -o r-ext.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c reader.c -o reader.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c scanner.c -o scanner.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I. -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c writer.c -o writer.o gcc -std=gnu99 -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r-ext.o reader.o scanner.o writer.o -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/yaml/libs ** R ** inst ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (yaml) Downloading GitHub repo muschellij2/desc@master from URL https://api.github.com/repos/muschellij2/desc/zipball/master Installing desc trying URL 'https://cloud.r-project.org/src/contrib/assertthat_0.2.0.tar.gz' Content type 'application/x-gzip' length 11612 bytes (11 KB) ================================================== downloaded 11 KB Installing assertthat '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/Rtmp1BMkCc/devtools349e130b74c6/assertthat' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘assertthat’ ... ** package ‘assertthat’ successfully unpacked and MD5 sums checked ** R ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (assertthat) trying URL 'https://cloud.r-project.org/src/contrib/crayon_1.3.4.tar.gz' Content type 'application/x-gzip' length 658694 bytes (643 KB) ================================================== downloaded 643 KB Installing crayon '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/Rtmp1BMkCc/devtools349ee769020/crayon' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘crayon’ ... ** package ‘crayon’ successfully unpacked and MD5 sums checked ** R ** inst ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (crayon) trying URL 'https://cloud.r-project.org/src/contrib/rprojroot_1.2.tar.gz' Content type 'application/x-gzip' length 42063 bytes (41 KB) ================================================== downloaded 41 KB Installing rprojroot trying URL 'https://cloud.r-project.org/src/contrib/backports_1.1.1.tar.gz' Content type 'application/x-gzip' length 10090 bytes ================================================== downloaded 10090 bytes Installing backports '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/Rtmp1BMkCc/devtools349e612ffdfe/backports' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘backports’ ... ** package ‘backports’ successfully unpacked and MD5 sums checked ** libs gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c dotsElt.c -o dotsElt.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c dotsLength.c -o dotsLength.o gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o backports.so dotsElt.o dotsLength.o init.o -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/backports/libs ** R ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (backports) '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/Rtmp1BMkCc/devtools349e3d63e0f2/rprojroot' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘rprojroot’ ... ** package ‘rprojroot’ successfully unpacked and MD5 sums checked ** R ** inst ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rprojroot) '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/Rtmp1BMkCc/devtools349e17d88e3d/muschellij2-desc-d35a9db' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘desc’ ... ** R ** inst ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (desc) '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/Rtmp1BMkCc/devtools349e51ec8406/muschellij2-ghtravis-7829289' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘ghtravis’ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (ghtravis) Using bundled GitHub PAT. Please add your own PAT to the env var `GITHUB_PAT` ghtravis version 0.8.5#!/bin/bash # https://gist.github.com/muschellij2/64f9104ccec09deb85d4928071b3c9e8 export cran_set='options(repos = "http://cran.rstudio.com"); ' # we may be able to change to remotes export ig_package=devtools export devtools_source='library(ghtravis); ' export devtools_source=${devtools_source}' '${cran_set} R --version install_gh() { str=${ig_package}'::install_github("' str=${str}"${1}" str=${str}'");' Rscript -e "${str}" } install_gh_no_dep() { str=${ig_package}'::install_github("' str=${str}"${1}" str=${str}'", upgrade_dependencies = FALSE);' Rscript -e "${str}" } r_install_if_missing() { str=${cran_set} str=${str}'if (!requireNamespace("'${1}'", ' str=${str}'quietly = TRUE))' str=${str}'install.packages("'${1}'")' Rscript -e "${str}" } if [[ -n "${CI}" ]]; then echo "CI is ${CI}" echo "Inside a CI service" fi # installing devtools r_install_if_missing ${ig_package} # x=`Rscript -e 'res=!requireNamespace("ghtravis"); cat(res*1)'` # if [ ${x} -eq 1 ] # then if [[ -n "${CI}" ]]; then install_gh_no_dep muschellij2/ghtravis fi # fi str='packageVersion(pkg = "ghtravis")' str='as.character('${str}')' str='c("ghtravis version", '${str}')' str='cat('${str}', sep=" ")' Rscript --vanilla -e "${str}" # wget to tempdir, source, then remove file wget_remove() { tfile=`tempfile` wget -O ${tfile} ${1} source ${tfile} rm ${tfile} } install_missing_remote_deps() { packs="\"${1}\"" shift for i in $@ do packs="${packs}, \"${i}\"" done packs="c(${packs})" echo "Installing repos ${packs}" str=${devtools_source} str=${str}'packs = install_missing_remote_deps(' str=${str}'remotes = '"${packs}"', ' str=${str}'dependencies = c("Imports", "Depends"));' Rscript -e "${str}" } # get filename extension get_ext() { file=`basename ${1}` ext=`echo "${file}" | awk -F . '{print $NF}'` if [ "$ext" == "gz" ] then ext=tar.gz fi echo "$ext" } # make temporary file with extension # of file passed in temp_with_ext() { ext=`get_ext ${1}` tfile=`tempfile` echo "${tfile}.${ext}" } # wget the tarball # then install wget_r_install() { tfile=`temp_with_ext ${1}` echo "Installing ${1}" wget -O ${tfile} ${1} &> /dev/null; # shift so install args can be passed shift R CMD INSTALL ${tfile} $* } # change .travis.yml to deploy with API key deploy_travis() { api_key="${1}" if [[ -n "${api_key}" ]]; then api_key=${DEPLOY_KEY} fi str=${devtools_source} str=${str}'deploy_travis(api_key = c("'${api_key}'"));' Rscript -e "${str}" } # args deployed_tarball package user tag [version optional] # deployed_tarball ITKR stnava latest # args deployed_tarball package user tag [version optional] deployed_tarball() { str=${devtools_source} str=${str}'res = deployed_tarball(' str=${str}' user="'${2}'"' str=${str}', package="'${1}'"' str=${str}', tag="'${3}'"' str=${str}', version="'${4}'"' str=${str}');' echo "${str}" >&2 res=`Rscript --vanilla -e "${str} cat(res)"` echo "$res" } # Binary install Package gh_binary_install() { packs="\"${1}\"" shift for i in $@ do packs="${packs}, \"${i}\"" done packs="c(${packs})" echo "Installing repos ${packs}" str=${devtools_source} str=${str}'install_remote_binaries(' str=${str}'remotes = '"${packs}"'); ' Rscript -e "${str}" } # gh_binary_install() { # package=${1} # version=${3} # str=${devtools_source} # str=${str}'res = set_update_var(version = "'${version}'",' # str=${str}'package = "'${package}'"); cat(res)' # update_package=`Rscript -e "${str}"` # echo "Update Variable for ${package} is: ${update_package}" # tarball=`deployed_tarball $*` # echo "${package} tarball is ${tarball}" # wget_r_install $tarball # drop_remote $package # } remote_binary_install() { packs="\"${1}\"" shift for i in $@ do packs="${packs}, \"${i}\"" done if [[ -n "${packs}" ]]; then echo "Installing ${packs}" else echo "Installing all package binaries in Remotes" fi packs="c(${packs})" str=${devtools_source} str=${str}'install_remote_binaries(' str=${str}'package = '"${packs}"'); ' Rscript -e "${str}" } drop_remote() { str=${devtools_source} packs="\"${1}\"" shift for i in $@ do packs="${packs}, \"${i}\"" done packs="c(${packs})" str=${str}' drop_remotes(drop_remotes = '"${packs}"');' Rscript -e "${str}" } install_remotes_no_dep() { packs="\"${1}\"" shift for i in $@ do packs="${packs}, \"${i}\"" done packs="c(${packs})" str=${devtools_source} str=${str}'install_remotes_no_dep(package = '"${packs}"');' Rscript -e "${str}" } install_nodep_and_drop() { install_remotes_no_dep ${1} drop_remote ${1} } install_build_with_tag() { # delete so no overwrite of linux build if [ "$TRAVIS_OS_NAME" = "osx" ]; then rm -f *.tar.gz fi packname=`Rscript -e 'cat(read.dcf("DESCRIPTION")[, "Package"])'` cd ../; if [ ${#TRAVIS_TAG} -gt 0 ]; then R CMD INSTALL --debug --build ${packname} ; fi; } install_build() { packname=`Rscript -e 'cat(read.dcf("DESCRIPTION")[, "Package"])'` cd ../ travis_wait 100 R CMD INSTALL --build ${packname} } cmake_setup() { # cmake_url=https://cmake.org/files/ # v${cmake_version}/cmake-${cmake_version}.0 cmake_url="https://muschellij2.github.io" cmake_url=${cmake_url}"/cmake_versions/" cmake_url=${cmake_url}"cmake-${cmake_version}.0" if [ "$TRAVIS_OS_NAME" = "linux" ]; then cmake_opts="--no-check-certificate" cmake_system="Linux" cmake_url=${cmake_url}-${cmake_system}-x86_64.sh # making so no output { wget -O cmake.sh ${cmake_opts} ${cmake_url} ; sh cmake.sh --skip-license --prefix=${HOME} ; rm cmake.sh ; } &> /dev/null; export PATH=${HOME}/bin:$PATH ; echo "export PATH=${HOME}/bin:$PATH ;" fi if [ "$TRAVIS_OS_NAME" = "osx" ]; then run_dir=$PWD ; cd ~/ ; cmake_opts="" ; cmake_system="Darwin" ; cmake_url=${cmake_url}-${cmake_system}-x86_64.tar.gz ; # making so no output { wget -O cmake.tar.gz ${cmake_opts} ${cmake_url}; tar -xf cmake.tar.gz &> /dev/null ; cmake_dir=`basename ${cmake_url}` ; cmake_dir=`echo $cmake_dir | awk '{ gsub(/.tar.gz/,""); print }'` ; cmake_dir=${PWD}/${cmake_dir}/CMake.app/Contents ; export PATH=${cmake_dir}/bin:$PATH ; } &> /dev/null echo "export PATH=${cmake_dir}/bin:$PATH ;" rm cmake.tar.gz ; cd ${run_dir} ; fi } export_clang_cxx() { echo "export CC=clang ;" echo "export CXX=clang++ ;" echo "export CXX1X=clang++ ;" echo "export CXX1XSTD=-std=c++11 ;" echo "export CXX11=clang++ ;" } clang_cxx() { mkdir -p ~/.R x=`clang --version` echo "clang --version returns: ${x}" x=`clang++ --version` echo "clang++ --version returns: ${x}" x=`export_clang_cxx`; eval ${x}; CCACHER="" if [[ -n "${CCACHE}" ]]; then CCACHER="\$(CCACHE) " echo "CCACHE=${CCACHE}" >> ~/.R/Makevars fi echo "CC=${CCACHER}${CC}" >> ~/.R/Makevars echo "CXX=${CCACHER}${CXX}" >> ~/.R/Makevars echo "CXX1X=${CCACHER}${CXX1X}" >> ~/.R/Makevars echo "CXX1XSTD=${CXX1XSTD}" >> ~/.R/Makevars echo "CXX11=${CCACHER}${CXX11}" >> ~/.R/Makevars # clang doesn't do well with openmp # if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then # echo "SHLIB_OPENMP_CXXFLAGS=" >> ~/.R/Makevars; # fi } cat_desc_elements(){ if [[ -n "${1}" ]]; then str='ghtravis::cat_desc_elements("'${1}'")' else str='ghtravis::cat_desc_elements()' fi pkg=`Rscript --vanilla -e "${str}"` echo "$pkg" } cat_desc_elements_remote(){ str='ghtravis::cat_desc_elements_remote(repo = "'${1}'")' pkg=`Rscript --vanilla -e "${str}"` echo "$pkg" } package_name(){ str='x=ghtravis::read_dcf("DESCRIPTION")$dcf;' str=${str}'cat(x$Package);' pkg=`Rscript --vanilla -e "${str}"` echo $pkg } package_version(){ str='x=ghtravis::read_dcf("DESCRIPTION")$dcf;' str=${str}'cat(x$Version);' pkg=`Rscript --vanilla -e "${str}"` echo $pkg } tarball_name(){ str='x=ghtravis::read_dcf("DESCRIPTION")$dcf;' str=${str}'x=paste0(x$Package, "_", ' str=${str}'x$Version, ".tar.gz");' str=${str}'cat(x);' tarball=`Rscript --vanilla -e "${str}"` echo $tarball } remove_neuroc_packages() { # so only does it if it's in a CI - just in case if [[ -z "${CI}" ]]; then echo "Not in CI - must run remove_neuroc_packages_force"; exit 1; fi remove_neuroc_packages_force $@ } # remove_neuroc_packages_force table_path USER # if table_path is empty, then will use default users remove_neuroc_packages_force() { install_gh muschellij2/neuroc.deps str='packageVersion(pkg = "neuroc.deps")' str='as.character('${str}')' str='c("neuroc.deps version", '${str}')' str='cat('${str}', sep=" ")' Rscript --vanilla -e "${str}" table_path="${1}" user="${2}" if [[ -z "${user}" ]]; then if [[ -n "${PROJECT_NAME}" ]] then user="${PROJECT_NAME}" else user="neuroconductor" fi fi fcn="neuroc.deps::remove_neuroc_packages" if [[ -z "${table_path}" ]]; then str=${fcn}'(user = "'${user}'");' else str=${fcn}'(table_path = "'${table_path}'");' fi Rscript -e "${str}" } remove_package() { packs="\"${1}\"" shift for i in $@ do packs="${packs}, \"${i}\"" done packs="c(${packs})" echo "Removing packages: ${packs}" str='packs = '"${packs}"';' str=${str}'check = packs %in% utils::installed.packages();' str=${str}' if (any(check)) utils::remove.packages(packs[check]);' Rscript -e "${str}" } jags_install() { # if [[ "${TRAVIS_OS_NAME}" = "linux" ]]; # then wget -O jags.tar.gz https://ayera.dl.sourceforge.net/project/mcmc-jags/JAGS/4.x/Source/JAGS-4.3.0.tar.gz jags_dir=`tar -tf jags.tar.gz | head -n 1` tar -xvf jags.tar.gz rm jags.tar.gz cd ${jags_dir} prefix=/usr ; if [[ "${TRAVIS_OS_NAME}" = "osx" ]]; then prefix=/usr/local ; fi ./configure --prefix=${prefix} && sudo make && sudo make install cd ../ sudo rm -rf ${jags_dir} # else # brew install jags; # fi } fftw_install() { # if [[ "${TRAVIS_OS_NAME}" = "linux" ]]; # then # sudo apt-get install -y libfftw3-dev ; # apt-get install -y libfftw3-dev ; # fi if [[ "${TRAVIS_OS_NAME}" = "osx" ]]; then brew install -y fftw ; fi } gsl_install() { if [[ "${TRAVIS_OS_NAME}" = "osx" ]]; then brew install -y gsl ; fi } ffmpeg_install() { if [[ "${TRAVIS_OS_NAME}" == "linux" ]]; then sudo apt-get -qq update ; sudo apt-get install -y software-properties-common ; sudo add-apt-repository -y ppa:mc3man/trusty-media ; sudo apt-get -qq update ; sudo apt-get install -y ffmpeg ; fi if [[ "${TRAVIS_OS_NAME}" == "osx" ]]; then brew install -y ffmpeg imagemagick; fi } check_fail() { str="message(devtools::check_failures(path = '" ; str=${str}"${RCHECK_DIR}" ; str=${str}"'))" ; Rscript -e "${str}" } check_warnings() { grep -q -R "WARNING" "${RCHECK_DIR}/00check.log" ; if [[ $? -eq 0 ]]; then exit 1; fi } install_deps() { deps="${1}" if [[ -z "${CI}" ]]; then deps="TRUE"; fi str='deps <- devtools::dev_package_deps(dependencies = ' str=${str}"${deps});" str=${str}'devtools::install_deps(dependencies = ' str=${str}"${deps});" str=${str}'if (!all(deps$package %in% installed.packages())) {' str=${str}' message("missing: ", paste(setdiff(deps$package, ' str=${str}'installed.packages()), collapse=", "));' str=${str}' q(status = 1, save = "no")' str=${str}'}' Rscript -e "${str}" } install_deps_no_suggests() { install_deps "NA" } no_open_mp() { if [ "$TRAVIS_OS_NAME" == "osx" ]; then mkdir -p ~/.R ; echo "SHLIB_OPENMP_CXXFLAGS = " >> ~/.R/Makevars ; echo "SHLIB_OPENMP_CFLAGS= " >> ~/.R/Makevars ; echo "SHLIB_OPENMP_CPPFLAGS = " >> ~/.R/Makevars ; fi } start_xvfb() { if [ "$TRAVIS_OS_NAME" == "osx" ]; then (sudo Xvfb :99 -ac -screen 0 1024x768x8; echo ok) & fi if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sh -e /etc/init.d/xvfb start ; fi } # if [ "$TRAVIS_OS_NAME" = "osx" ]; # then # brew install fftw # fi # "DEB": "libfftw3-dev", # 6 "OSX/brew": "fftw", # 7 "RPM": "fftw-devel"ANTSR_TRAVIS VERSION 0.4 cmake: /home/travis/R-bin/lib/libcurl.so.4: no version information available (required by cmake) cmake version 3.2.2 CMake suite maintained and supported by Kitware (kitware.com/cmake). export PATH=/home/travis/bin:/home/travis/bin:/home/travis/R-bin/bin:/home/travis/bin:/home/travis/.local/bin:/opt/pyenv/shims:/home/travis/.phpenv/shims:/home/travis/perl5/perlbrew/bin:/home/travis/.nvm/versions/node/v6.9.4/bin:/home/travis/.kiex/elixirs/elixir-1.3.2/bin:/home/travis/.kiex/bin:/home/travis/.rvm/gems/ruby-2.4.1/bin:/home/travis/.rvm/gems/ruby-2.4.1@global/bin:/home/travis/.rvm/rubies/ruby-2.4.1/bin:/home/travis/gopath/bin:/home/travis/.gimme/versions/go1.7.4.linux.amd64/bin:/usr/local/phantomjs/bin:/usr/local/phantomjs:/usr/local/neo4j-3.2.1/bin:/usr/local/clang-3.9.0/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/ghc/bin:/home/travis/.rvm/bin:/home/travis/.phpenv/bin:/opt/pyenv/bin ; cmake version 3.4.0 CMake suite maintained and supported by Kitware (kitware.com/cmake). clang --version returns: clang version 3.9.0 (tags/RELEASE_390/final) Target: x86_64-unknown-linux-gnu Thread model: posix InstalledDir: /usr/local/clang-3.9.0/bin clang++ --version returns: clang version 3.9.0 (tags/RELEASE_390/final) Target: x86_64-unknown-linux-gnu Thread model: posix InstalledDir: /usr/local/clang-3.9.0/bin Installing Missing Deps Installing repos c("stnava/ITKR", "stnava/ANTsRCore", "stnava/ANTsR") Repositories are given, overriding path name installed 1 Rcpp FALSE 4 RcppEigen FALSE 5 tools TRUE 6 magrittr FALSE 7 stats TRUE 8 utils TRUE 9 methods TRUE 10 graphics TRUE 11 grDevices TRUE 12 magic FALSE 14 psych FALSE 15 rsvd FALSE All installed dependencies are tools,stats,utils,methods,graphics,grDevices All missing dependencies are Rcpp,RcppEigen,magrittr,magic,psych,rsvd Installing packages into ‘/usr/local/lib/R/site-library’ (as ‘lib’ is unspecified) also installing the dependencies ‘abind’, ‘mnormt’ trying URL 'http://cran.rstudio.com/src/contrib/abind_1.4-5.tar.gz' Content type 'application/x-gzip' length 21810 bytes (21 KB) ================================================== downloaded 21 KB trying URL 'http://cran.rstudio.com/src/contrib/mnormt_1.5-5.tar.gz' Content type 'application/x-gzip' length 37169 bytes (36 KB) ================================================== downloaded 36 KB trying URL 'http://cran.rstudio.com/src/contrib/Rcpp_0.12.13.tar.gz' Content type 'application/x-gzip' length 3751669 bytes (3.6 MB) ================================================== downloaded 3.6 MB trying URL 'http://cran.rstudio.com/src/contrib/RcppEigen_0.3.3.3.0.tar.gz' Content type 'application/x-gzip' length 1634023 bytes (1.6 MB) ================================================== downloaded 1.6 MB trying URL 'http://cran.rstudio.com/src/contrib/magrittr_1.5.tar.gz' Content type 'application/x-gzip' length 200504 bytes (195 KB) ================================================== downloaded 195 KB trying URL 'http://cran.rstudio.com/src/contrib/magic_1.5-6.tar.gz' Content type 'application/x-gzip' length 203897 bytes (199 KB) ================================================== downloaded 199 KB trying URL 'http://cran.rstudio.com/src/contrib/psych_1.7.8.tar.gz' Content type 'application/x-gzip' length 3311758 bytes (3.2 MB) ================================================== downloaded 3.2 MB trying URL 'http://cran.rstudio.com/src/contrib/rsvd_0.6.tar.gz' Content type 'application/x-gzip' length 1555349 bytes (1.5 MB) ================================================== downloaded 1.5 MB * installing *source* package ‘abind’ ... ** package ‘abind’ successfully unpacked and MD5 sums checked ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (abind) * installing *source* package ‘mnormt’ ... ** package ‘mnormt’ successfully unpacked and MD5 sums checked ** libs gfortran -fpic -g -O2 -c biv-nt.f -o biv-nt.o gfortran -fpic -g -O2 -c sadmvnt.f -o sadmvnt.o clang -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o mnormt.so biv-nt.o sadmvnt.o -lgfortran -lm -lquadmath -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/mnormt/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (mnormt) * installing *source* package ‘Rcpp’ ... ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** libs clang++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include/ -I/home/travis/R-bin/include -fpic -g -O2 -c Date.cpp -o Date.o clang++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include/ -I/home/travis/R-bin/include -fpic -g -O2 -c Module.cpp -o Module.o clang++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include/ -I/home/travis/R-bin/include -fpic -g -O2 -c Rcpp_init.cpp -o Rcpp_init.o clang++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include/ -I/home/travis/R-bin/include -fpic -g -O2 -c api.cpp -o api.o clang++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include/ -I/home/travis/R-bin/include -fpic -g -O2 -c attributes.cpp -o attributes.o clang++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include/ -I/home/travis/R-bin/include -fpic -g -O2 -c barrier.cpp -o barrier.o clang++ -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o Rcpp.so Date.o Module.o Rcpp_init.o api.o attributes.o barrier.o -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/Rcpp/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Rcpp) * installing *source* package ‘magrittr’ ... ** package ‘magrittr’ successfully unpacked and MD5 sums checked ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (magrittr) * installing *source* package ‘rsvd’ ... ** package ‘rsvd’ successfully unpacked and MD5 sums checked ** R ** data *** moving datasets to lazyload DB ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (rsvd) * installing *source* package ‘RcppEigen’ ... ** package ‘RcppEigen’ successfully unpacked and MD5 sums checked ** libs clang++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -I/home/travis/R-bin/include -I../inst/include -fpic -g -O2 -c RcppEigen.cpp -o RcppEigen.o clang++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -I/home/travis/R-bin/include -I../inst/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -I/home/travis/R-bin/include -I../inst/include -fpic -g -O2 -c fastLm.cpp -o fastLm.o clang -I/home/travis/R-bin/lib/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -I/home/travis/R-bin/include -fpic -g -O2 -c init.c -o init.o clang++ -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o init.o -L/home/travis/R-bin/lib/R/lib -lRlapack -L/home/travis/R-bin/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/RcppEigen/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (RcppEigen) * installing *source* package ‘magic’ ... ** package ‘magic’ successfully unpacked and MD5 sums checked ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (magic) * installing *source* package ‘psych’ ... ** package ‘psych’ successfully unpacked and MD5 sums checked ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (psych) The downloaded source packages are in ‘/tmp/Rtmp38Swq2/downloaded_packages’ Done Installing Missing Deps Installing repos c("stnava/ITKR") [1] "stnava/ITKR" OK (HTTP 200).OK (HTTP 200).Table is tag_name zipball_url 7 latest https://api.github.com/repos/stnava/ITKR/zipball/latest 13 v0.4.12 https://api.github.com/repos/stnava/ITKR/zipball/v0.4.12 3 latest https://api.github.com/repos/stnava/ITKR/zipball/latest 5 latest https://api.github.com/repos/stnava/ITKR/zipball/latest 8 v0.0.0 https://api.github.com/repos/stnava/ITKR/zipball/v0.0.0 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 tarball_url 7 https://api.github.com/repos/stnava/ITKR/tarball/latest 13 https://api.github.com/repos/stnava/ITKR/tarball/v0.4.12 3 https://api.github.com/repos/stnava/ITKR/tarball/latest 5 https://api.github.com/repos/stnava/ITKR/tarball/latest 8 https://api.github.com/repos/stnava/ITKR/tarball/v0.0.0 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 commit.sha 7 f43da5cc95c8c6e44c8d8ce9a7ccef006923a5dd 13 b6570c53886bcc07e951a5eabe3186ac3c1cb6b5 3 f43da5cc95c8c6e44c8d8ce9a7ccef006923a5dd 5 f43da5cc95c8c6e44c8d8ce9a7ccef006923a5dd 8 46699d16307cabb77efad9c42a219b94384abf4a NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 commit.url 7 https://api.github.com/repos/stnava/ITKR/commits/f43da5cc95c8c6e44c8d8ce9a7ccef006923a5dd 13 https://api.github.com/repos/stnava/ITKR/commits/b6570c53886bcc07e951a5eabe3186ac3c1cb6b5 3 https://api.github.com/repos/stnava/ITKR/commits/f43da5cc95c8c6e44c8d8ce9a7ccef006923a5dd 5 https://api.github.com/repos/stnava/ITKR/commits/f43da5cc95c8c6e44c8d8ce9a7ccef006923a5dd 8 https://api.github.com/repos/stnava/ITKR/commits/46699d16307cabb77efad9c42a219b94384abf4a NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 url 7 https://api.github.com/repos/stnava/ITKR/releases/2439743 13 https://api.github.com/repos/stnava/ITKR/releases/6741121 3 https://api.github.com/repos/stnava/ITKR/releases/2439743 5 https://api.github.com/repos/stnava/ITKR/releases/2439743 8 https://api.github.com/repos/stnava/ITKR/releases/1506995 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 assets_url 7 https://api.github.com/repos/stnava/ITKR/releases/2439743/assets 13 https://api.github.com/repos/stnava/ITKR/releases/6741121/assets 3 https://api.github.com/repos/stnava/ITKR/releases/2439743/assets 5 https://api.github.com/repos/stnava/ITKR/releases/2439743/assets 8 https://api.github.com/repos/stnava/ITKR/releases/1506995/assets NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 upload_url 7 https://uploads.github.com/repos/stnava/ITKR/releases/2439743/assets{?name,label} 13 https://uploads.github.com/repos/stnava/ITKR/releases/6741121/assets{?name,label} 3 https://uploads.github.com/repos/stnava/ITKR/releases/2439743/assets{?name,label} 5 https://uploads.github.com/repos/stnava/ITKR/releases/2439743/assets{?name,label} 8 https://uploads.github.com/repos/stnava/ITKR/releases/1506995/assets{?name,label} NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 id asset_updated_at asset_created_at created_at 7 2439743 2017-06-16 17:42:13 2017-06-16 17:42:12 2017-06-24 14:27:06 13 6741121 2017-06-16 17:20:44 2017-06-16 17:20:42 2017-06-16 17:02:31 3 2439743 2016-07-20 22:39:46 2016-07-20 22:39:44 2017-06-24 14:27:06 5 2439743 2016-01-16 15:26:03 2016-01-16 15:26:02 2017-06-24 14:27:06 8 1506995 2015-07-07 19:52:38 2015-07-07 19:52:37 2015-07-07 19:31:04 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 published_at asset_name asset_label 7 2017-06-24 14:44:31 ITKR_0.4.12_R_x86_64-pc-linux-gnu.tar.gz 13 2017-06-16 17:20:44 ITKR_0.4.12_R_x86_64-pc-linux-gnu.tar.gz 3 2017-06-24 14:44:31 ITKR_0.0.1_R_x86_64-pc-linux-gnu.tar.gz 5 2017-06-24 14:44:31 ITKR_0.0_R_x86_64-pc-linux-gnu.tar.gz 8 2015-07-07 19:50:21 ITKR_0.0_R_x86_64-pc-linux-gnu.tar.gz NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 asset_download_count 7 1908 13 4 3 1301 5 634 8 271 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 asset_browser_download_url 7 https://github.com/stnava/ITKR/releases/download/latest/ITKR_0.4.12_R_x86_64-pc-linux-gnu.tar.gz 13 https://github.com/stnava/ITKR/releases/download/v0.4.12/ITKR_0.4.12_R_x86_64-pc-linux-gnu.tar.gz 3 https://github.com/stnava/ITKR/releases/download/latest/ITKR_0.0.1_R_x86_64-pc-linux-gnu.tar.gz 5 https://github.com/stnava/ITKR/releases/download/latest/ITKR_0.0_R_x86_64-pc-linux-gnu.tar.gz 8 https://github.com/stnava/ITKR/releases/download/v0.0.0/ITKR_0.0_R_x86_64-pc-linux-gnu.tar.gz NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 Installing ITKR package binaries --2017-10-21 14:18:45-- https://github.com/stnava/ITKR/releases/download/latest/ITKR_0.4.12_R_x86_64-pc-linux-gnu.tar.gz Resolving github.com (github.com)... 192.30.253.113, 192.30.253.112 Connecting to github.com (github.com)|192.30.253.113|:443... connected. HTTP request sent, awaiting response... 302 Found Location: https://github-production-release-asset-2e65be.s3.amazonaws.com/32426835/99f44caa-5299-11e7-9590-2dd4222d544c?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20171021%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20171021T141845Z&X-Amz-Expires=300&X-Amz-Signature=f1b2bbd71323c565b7f44aa32df897585d1a342f58a6c2e1ed8bb53ecb9e1b83&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3DITKR_0.4.12_R_x86_64-pc-linux-gnu.tar.gz&response-content-type=application%2Foctet-stream [following] --2017-10-21 14:18:45-- https://github-production-release-asset-2e65be.s3.amazonaws.com/32426835/99f44caa-5299-11e7-9590-2dd4222d544c?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20171021%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20171021T141845Z&X-Amz-Expires=300&X-Amz-Signature=f1b2bbd71323c565b7f44aa32df897585d1a342f58a6c2e1ed8bb53ecb9e1b83&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3DITKR_0.4.12_R_x86_64-pc-linux-gnu.tar.gz&response-content-type=application%2Foctet-stream Resolving github-production-release-asset-2e65be.s3.amazonaws.com (github-production-release-asset-2e65be.s3.amazonaws.com)... 52.216.160.35 Connecting to github-production-release-asset-2e65be.s3.amazonaws.com (github-production-release-asset-2e65be.s3.amazonaws.com)|52.216.160.35|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 22056409 (21M) [application/octet-stream] Saving to: ‘/tmp/RtmpP9byvG/ITKR_0.4.12_R_x86_64-pc-linux-gnu.tar.gz’ 0% [ ] 0 --.-K/s 0% [ ] 138,804 635KB/s 2% [ ] 547,380 1.22MB/s 6% [=> ] 1,417,780 2.11MB/s 14% [====> ] 3,141,172 3.50MB/s 26% [=========> ] 5,804,596 5.17MB/s 40% [==============> ] 8,938,036 6.64MB/s 46% [=================> ] 10,261,044 6.53MB/s 51% [===================> ] 11,322,932 6.31MB/s 60% [======================> ] 13,255,220 6.57MB/s 73% [===========================> ] 16,319,028 7.28MB/s 83% [===============================> ] 18,355,764 7.44MB/s 91% [==================================> ] 20,166,196 7.49MB/s 100%[======================================>] 22,056,409 7.71MB/s in 2.7s 2017-10-21 14:18:48 (7.71 MB/s) - ‘/tmp/RtmpP9byvG/ITKR_0.4.12_R_x86_64-pc-linux-gnu.tar.gz’ saved [22056409/22056409] Installing package into ‘/usr/local/lib/R/site-library’ (as ‘lib’ is unspecified) * installing *binary* package ‘ITKR’ ... * DONE (ITKR) Rewriting new remotes: stnava/ANTsR, stnava/ANTsRCore Installing repos c("stnava/ANTsRCore") [1] "stnava/ANTsRCore" OK (HTTP 200).OK (HTTP 200).Table is tag_name 29 v0.4.2.1 28 v0.4.2 27 v0.3.8.1 26 v0.3.7.5.1 25 v0.3.7.5 24 v0.3.7.4.9999 18 v0.3.7.4.13 16 v0.3.7.4.11 21 v0.3.7.4.8 20 v0.3.7.4.3 19 v0.3.7.4.2 3 v0.1 5 v0.1.0 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 zipball_url 29 https://api.github.com/repos/ANTsX/ANTsRCore/zipball/v0.4.2.1 28 https://api.github.com/repos/ANTsX/ANTsRCore/zipball/v0.4.2 27 https://api.github.com/repos/ANTsX/ANTsRCore/zipball/v0.3.8.1 26 https://api.github.com/repos/ANTsX/ANTsRCore/zipball/v0.3.7.5.1 25 https://api.github.com/repos/ANTsX/ANTsRCore/zipball/v0.3.7.5 24 https://api.github.com/repos/ANTsX/ANTsRCore/zipball/v0.3.7.4.9999 18 https://api.github.com/repos/ANTsX/ANTsRCore/zipball/v0.3.7.4.13 16 https://api.github.com/repos/ANTsX/ANTsRCore/zipball/v0.3.7.4.11 21 https://api.github.com/repos/ANTsX/ANTsRCore/zipball/v0.3.7.4.8 20 https://api.github.com/repos/ANTsX/ANTsRCore/zipball/v0.3.7.4.3 19 https://api.github.com/repos/ANTsX/ANTsRCore/zipball/v0.3.7.4.2 3 https://api.github.com/repos/ANTsX/ANTsRCore/zipball/v0.1 5 https://api.github.com/repos/ANTsX/ANTsRCore/zipball/v0.1.0 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 tarball_url 29 https://api.github.com/repos/ANTsX/ANTsRCore/tarball/v0.4.2.1 28 https://api.github.com/repos/ANTsX/ANTsRCore/tarball/v0.4.2 27 https://api.github.com/repos/ANTsX/ANTsRCore/tarball/v0.3.8.1 26 https://api.github.com/repos/ANTsX/ANTsRCore/tarball/v0.3.7.5.1 25 https://api.github.com/repos/ANTsX/ANTsRCore/tarball/v0.3.7.5 24 https://api.github.com/repos/ANTsX/ANTsRCore/tarball/v0.3.7.4.9999 18 https://api.github.com/repos/ANTsX/ANTsRCore/tarball/v0.3.7.4.13 16 https://api.github.com/repos/ANTsX/ANTsRCore/tarball/v0.3.7.4.11 21 https://api.github.com/repos/ANTsX/ANTsRCore/tarball/v0.3.7.4.8 20 https://api.github.com/repos/ANTsX/ANTsRCore/tarball/v0.3.7.4.3 19 https://api.github.com/repos/ANTsX/ANTsRCore/tarball/v0.3.7.4.2 3 https://api.github.com/repos/ANTsX/ANTsRCore/tarball/v0.1 5 https://api.github.com/repos/ANTsX/ANTsRCore/tarball/v0.1.0 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 commit.sha 29 1b54839c21d661787fa662e2460fe0507cfa8c0f 28 683855c8c11eb661285b388e00c70d2e3a427997 27 722181fe5954acdc88d6d50b8a4d9d0d38420a20 26 686ed38522c9b05f349c8aee5f793697c3d498d6 25 29dfb7632fc98747047d3c901ce1d67d1a68a1eb 24 c382d45a47ed68d42c7d3543bc8170743105e4cc 18 acec8cca64ffe515df247f5977c7b5f7a0004fd8 16 9d08d8d1d3070b9d2563cd276f504c48d500c6b1 21 026766df01a43f258039f6654fdb4e7d4fbe12cc 20 9d654029565c605dde1598114364f133fb372c96 19 916f90f4ddacf6a3404e81b06ead48f4dfddc183 3 cd05a0caf98729c4a4417dc07e1f289bdfc8f603 5 d5a976d668c0ad5e153dc5a8773df384fd0436b6 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 commit.url 29 https://api.github.com/repos/ANTsX/ANTsRCore/commits/1b54839c21d661787fa662e2460fe0507cfa8c0f 28 https://api.github.com/repos/ANTsX/ANTsRCore/commits/683855c8c11eb661285b388e00c70d2e3a427997 27 https://api.github.com/repos/ANTsX/ANTsRCore/commits/722181fe5954acdc88d6d50b8a4d9d0d38420a20 26 https://api.github.com/repos/ANTsX/ANTsRCore/commits/686ed38522c9b05f349c8aee5f793697c3d498d6 25 https://api.github.com/repos/ANTsX/ANTsRCore/commits/29dfb7632fc98747047d3c901ce1d67d1a68a1eb 24 https://api.github.com/repos/ANTsX/ANTsRCore/commits/c382d45a47ed68d42c7d3543bc8170743105e4cc 18 https://api.github.com/repos/ANTsX/ANTsRCore/commits/acec8cca64ffe515df247f5977c7b5f7a0004fd8 16 https://api.github.com/repos/ANTsX/ANTsRCore/commits/9d08d8d1d3070b9d2563cd276f504c48d500c6b1 21 https://api.github.com/repos/ANTsX/ANTsRCore/commits/026766df01a43f258039f6654fdb4e7d4fbe12cc 20 https://api.github.com/repos/ANTsX/ANTsRCore/commits/9d654029565c605dde1598114364f133fb372c96 19 https://api.github.com/repos/ANTsX/ANTsRCore/commits/916f90f4ddacf6a3404e81b06ead48f4dfddc183 3 https://api.github.com/repos/ANTsX/ANTsRCore/commits/cd05a0caf98729c4a4417dc07e1f289bdfc8f603 5 https://api.github.com/repos/ANTsX/ANTsRCore/commits/d5a976d668c0ad5e153dc5a8773df384fd0436b6 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 url 29 https://api.github.com/repos/ANTsX/ANTsRCore/releases/7357093 28 https://api.github.com/repos/ANTsX/ANTsRCore/releases/7353530 27 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6955779 26 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6882807 25 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6882024 24 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6874622 18 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6873959 16 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6873550 21 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6870601 20 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6867451 19 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6853130 3 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6477202 5 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6477188 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 assets_url 29 https://api.github.com/repos/ANTsX/ANTsRCore/releases/7357093/assets 28 https://api.github.com/repos/ANTsX/ANTsRCore/releases/7353530/assets 27 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6955779/assets 26 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6882807/assets 25 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6882024/assets 24 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6874622/assets 18 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6873959/assets 16 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6873550/assets 21 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6870601/assets 20 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6867451/assets 19 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6853130/assets 3 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6477202/assets 5 https://api.github.com/repos/ANTsX/ANTsRCore/releases/6477188/assets NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 upload_url 29 https://uploads.github.com/repos/ANTsX/ANTsRCore/releases/7357093/assets{?name,label} 28 https://uploads.github.com/repos/ANTsX/ANTsRCore/releases/7353530/assets{?name,label} 27 https://uploads.github.com/repos/ANTsX/ANTsRCore/releases/6955779/assets{?name,label} 26 https://uploads.github.com/repos/ANTsX/ANTsRCore/releases/6882807/assets{?name,label} 25 https://uploads.github.com/repos/ANTsX/ANTsRCore/releases/6882024/assets{?name,label} 24 https://uploads.github.com/repos/ANTsX/ANTsRCore/releases/6874622/assets{?name,label} 18 https://uploads.github.com/repos/ANTsX/ANTsRCore/releases/6873959/assets{?name,label} 16 https://uploads.github.com/repos/ANTsX/ANTsRCore/releases/6873550/assets{?name,label} 21 https://uploads.github.com/repos/ANTsX/ANTsRCore/releases/6870601/assets{?name,label} 20 https://uploads.github.com/repos/ANTsX/ANTsRCore/releases/6867451/assets{?name,label} 19 https://uploads.github.com/repos/ANTsX/ANTsRCore/releases/6853130/assets{?name,label} 3 https://uploads.github.com/repos/ANTsX/ANTsRCore/releases/6477202/assets{?name,label} 5 https://uploads.github.com/repos/ANTsX/ANTsRCore/releases/6477188/assets{?name,label} NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 id asset_updated_at asset_created_at created_at 29 7357093 2017-08-11 05:39:49 2017-08-11 05:39:40 2017-08-11 04:15:10 28 7353530 2017-08-10 20:30:54 2017-08-10 20:30:46 2017-08-10 17:37:32 27 6955779 2017-07-06 18:51:59 2017-07-06 18:51:51 2017-07-06 16:51:20 26 6882807 2017-06-29 18:15:42 2017-06-29 18:15:34 2017-06-29 14:47:28 25 6882024 2017-06-29 17:12:58 2017-06-29 17:12:47 2017-06-29 14:40:17 24 6874622 2017-06-29 07:45:58 2017-06-29 07:45:50 2017-06-29 05:28:25 18 6873959 2017-06-29 06:30:25 2017-06-29 06:30:10 2017-06-29 04:29:34 16 6873550 2017-06-29 05:19:32 2017-06-29 05:19:22 2017-06-29 04:01:48 21 6870601 2017-06-28 21:13:32 2017-06-28 21:13:19 2017-06-28 19:19:31 20 6867451 2017-06-28 17:10:16 2017-06-28 17:10:08 2017-06-28 15:12:08 19 6853130 2017-06-27 17:36:29 2017-06-27 17:36:22 2017-06-27 15:45:46 3 6477202 2017-05-23 14:33:58 2017-05-23 14:33:52 2017-05-18 21:13:00 5 6477188 2017-05-23 14:32:53 2017-05-23 14:32:49 2017-05-23 10:14:45 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 published_at asset_name 29 2017-08-11 05:39:49 ANTsRCore_0.4.2.1_R_x86_64-pc-linux-gnu.tar.gz 28 2017-08-10 20:30:54 ANTsRCore_0.4.2_R_x86_64-pc-linux-gnu.tar.gz 27 2017-07-06 18:51:59 ANTsRCore_0.3.8.1_R_x86_64-pc-linux-gnu.tar.gz 26 2017-06-29 18:15:42 ANTsRCore_0.3.7.5_R_x86_64-pc-linux-gnu.tar.gz 25 2017-06-29 17:12:58 ANTsRCore_0.3.7.5_R_x86_64-pc-linux-gnu.tar.gz 24 2017-06-29 07:45:58 ANTsRCore_0.3.7.4_R_x86_64-pc-linux-gnu.tar.gz 18 2017-06-29 06:30:25 ANTsRCore_0.3.7.4_R_x86_64-pc-linux-gnu.tar.gz 16 2017-06-29 05:19:32 ANTsRCore_0.3.7.4_R_x86_64-pc-linux-gnu.tar.gz 21 2017-06-28 21:13:32 ANTsRCore_0.3.7.4_R_x86_64-pc-linux-gnu.tar.gz 20 2017-06-28 17:10:16 ANTsRCore_0.3.7.4_R_x86_64-pc-linux-gnu.tar.gz 19 2017-06-27 17:36:29 ANTsRCore_0.3.7.4_R_x86_64-pc-linux-gnu.tar.gz 3 2017-05-23 14:33:58 ANTsRCore_0.1_R_x86_64-pc-linux-gnu.tar.gz 5 2017-05-23 14:32:54 ANTsRCore_0.1_R_x86_64-pc-linux-gnu.tar.gz NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 asset_label asset_download_count 29 503 28 2 27 239 26 37 25 2 24 8 18 1 16 0 21 0 20 0 19 3 3 19 5 2 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 asset_browser_download_url 29 https://github.com/ANTsX/ANTsRCore/releases/download/v0.4.2.1/ANTsRCore_0.4.2.1_R_x86_64-pc-linux-gnu.tar.gz 28 https://github.com/ANTsX/ANTsRCore/releases/download/v0.4.2/ANTsRCore_0.4.2_R_x86_64-pc-linux-gnu.tar.gz 27 https://github.com/ANTsX/ANTsRCore/releases/download/v0.3.8.1/ANTsRCore_0.3.8.1_R_x86_64-pc-linux-gnu.tar.gz 26 https://github.com/ANTsX/ANTsRCore/releases/download/v0.3.7.5.1/ANTsRCore_0.3.7.5_R_x86_64-pc-linux-gnu.tar.gz 25 https://github.com/ANTsX/ANTsRCore/releases/download/v0.3.7.5/ANTsRCore_0.3.7.5_R_x86_64-pc-linux-gnu.tar.gz 24 https://github.com/ANTsX/ANTsRCore/releases/download/v0.3.7.4.9999/ANTsRCore_0.3.7.4_R_x86_64-pc-linux-gnu.tar.gz 18 https://github.com/ANTsX/ANTsRCore/releases/download/v0.3.7.4.13/ANTsRCore_0.3.7.4_R_x86_64-pc-linux-gnu.tar.gz 16 https://github.com/ANTsX/ANTsRCore/releases/download/v0.3.7.4.11/ANTsRCore_0.3.7.4_R_x86_64-pc-linux-gnu.tar.gz 21 https://github.com/ANTsX/ANTsRCore/releases/download/v0.3.7.4.8/ANTsRCore_0.3.7.4_R_x86_64-pc-linux-gnu.tar.gz 20 https://github.com/ANTsX/ANTsRCore/releases/download/v0.3.7.4.3/ANTsRCore_0.3.7.4_R_x86_64-pc-linux-gnu.tar.gz 19 https://github.com/ANTsX/ANTsRCore/releases/download/v0.3.7.4.2/ANTsRCore_0.3.7.4_R_x86_64-pc-linux-gnu.tar.gz 3 https://github.com/ANTsX/ANTsRCore/releases/download/v0.1/ANTsRCore_0.1_R_x86_64-pc-linux-gnu.tar.gz 5 https://github.com/ANTsX/ANTsRCore/releases/download/v0.1.0/ANTsRCore_0.1_R_x86_64-pc-linux-gnu.tar.gz NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 Installing ANTsRCore package binaries --2017-10-21 14:18:57-- https://github.com/ANTsX/ANTsRCore/releases/download/v0.4.2.1/ANTsRCore_0.4.2.1_R_x86_64-pc-linux-gnu.tar.gz Resolving github.com (github.com)... 192.30.253.113, 192.30.253.112 Connecting to github.com (github.com)|192.30.253.113|:443... connected. HTTP request sent, awaiting response... 302 Found Location: https://github-production-release-asset-2e65be.s3.amazonaws.com/83897912/f180ec22-7e35-11e7-88e3-7d89401d085c?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20171021%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20171021T141857Z&X-Amz-Expires=300&X-Amz-Signature=a7f3db5969f739e21efb4fc8535b262de612a8ed8b6158fd059cf28fc8542c79&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3DANTsRCore_0.4.2.1_R_x86_64-pc-linux-gnu.tar.gz&response-content-type=application%2Foctet-stream [following] --2017-10-21 14:18:57-- https://github-production-release-asset-2e65be.s3.amazonaws.com/83897912/f180ec22-7e35-11e7-88e3-7d89401d085c?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20171021%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20171021T141857Z&X-Amz-Expires=300&X-Amz-Signature=a7f3db5969f739e21efb4fc8535b262de612a8ed8b6158fd059cf28fc8542c79&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3DANTsRCore_0.4.2.1_R_x86_64-pc-linux-gnu.tar.gz&response-content-type=application%2Foctet-stream Resolving github-production-release-asset-2e65be.s3.amazonaws.com (github-production-release-asset-2e65be.s3.amazonaws.com)... 52.216.228.168 Connecting to github-production-release-asset-2e65be.s3.amazonaws.com (github-production-release-asset-2e65be.s3.amazonaws.com)|52.216.228.168|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 209040994 (199M) [application/octet-stream] Saving to: ‘/tmp/RtmpQSbnN5/ANTsRCore_0.4.2.1_R_x86_64-pc-linux-gnu.tar.gz’ 0% [ ] 0 --.-K/s 0% [ ] 234,029 1.00MB/s 0% [ ] 843,309 1.80MB/s 0% [ ] 1,557,037 2.21MB/s 0% [ ] 1,949,229 2.08MB/s 1% [ ] 2,705,965 2.31MB/s 1% [ ] 3,611,181 2.57MB/s 1% [ ] 4,133,421 2.52MB/s 2% [ ] 4,673,069 2.49MB/s 2% [> ] 5,700,141 2.70MB/s 3% [> ] 6,674,989 2.85MB/s 3% [> ] 7,632,429 2.96MB/s 4% [> ] 8,398,381 2.98MB/s 4% [> ] 8,833,581 2.90MB/s 4% [> ] 9,564,717 2.91MB/s eta 65s 5% [> ] 10,469,933 2.98MB/s eta 65s 5% [=> ] 11,479,597 3.17MB/s eta 65s 5% [=> ] 12,454,445 3.29MB/s eta 65s 6% [=> ] 13,386,285 3.36MB/s eta 65s 6% [=> ] 14,386,733 3.51MB/s eta 58s 7% [=> ] 15,396,397 3.60MB/s eta 58s 7% [==> ] 16,510,509 3.66MB/s eta 58s 8% [==> ] 17,032,749 3.64MB/s eta 58s 8% [==> ] 17,903,149 3.72MB/s eta 58s 9% [==> ] 18,825,773 3.73MB/s eta 54s 9% [==> ] 19,974,701 3.78MB/s eta 54s 10% [==> ] 20,984,365 3.80MB/s eta 54s 10% [===> ] 22,063,661 3.88MB/s eta 54s 10% [===> ] 22,620,717 3.88MB/s eta 54s 11% [===> ] 23,560,749 3.96MB/s eta 51s 11% [===> ] 24,465,965 3.97MB/s eta 51s 11% [===> ] 24,814,125 3.80MB/s eta 51s 12% [===> ] 25,318,957 3.67MB/s eta 51s 12% [===> ] 26,137,133 3.62MB/s eta 51s 12% [====> ] 27,007,533 3.59MB/s eta 51s 13% [====> ] 27,825,709 3.55MB/s eta 51s 13% [====> ] 28,626,477 3.44MB/s eta 51s 14% [====> ] 29,270,573 3.45MB/s eta 51s 14% [====> ] 30,228,013 3.51MB/s eta 51s 15% [====> ] 31,481,389 3.59MB/s eta 49s 15% [=====> ] 32,578,093 3.60MB/s eta 49s 16% [=====> ] 33,500,717 3.58MB/s eta 49s 16% [=====> ] 34,597,421 3.55MB/s eta 49s 17% [=====> ] 35,920,429 3.75MB/s eta 49s 17% [=====> ] 37,173,805 3.88MB/s eta 46s 18% [======> ] 37,922,349 3.81MB/s eta 46s 18% [======> ] 38,427,181 3.81MB/s eta 46s 18% [======> ] 39,193,133 3.88MB/s eta 46s 19% [======> ] 40,150,573 3.97MB/s eta 46s 19% [======> ] 41,003,565 3.96MB/s eta 45s 19% [======> ] 41,804,333 3.94MB/s eta 45s 20% [======> ] 42,431,021 3.91MB/s eta 45s 20% [=======> ] 43,057,709 3.89MB/s eta 45s 20% [=======> ] 43,736,621 3.85MB/s eta 45s 21% [=======> ] 44,450,349 3.67MB/s eta 45s 21% [=======> ] 45,181,485 3.57MB/s eta 45s 21% [=======> ] 45,721,133 3.48MB/s eta 45s 22% [=======> ] 46,208,557 3.29MB/s eta 45s 22% [=======> ] 46,835,245 3.14MB/s eta 45s 22% [=======> ] 47,844,909 3.09MB/s eta 45s 23% [========> ] 48,941,613 3.12MB/s eta 45s 23% [========> ] 49,916,461 3.24MB/s eta 45s 24% [========> ] 50,734,637 3.28MB/s eta 45s 24% [========> ] 51,709,485 3.28MB/s eta 45s 25% [========> ] 52,719,149 3.33MB/s eta 43s 25% [=========> ] 53,624,365 3.36MB/s eta 43s 25% [=========> ] 54,320,685 3.37MB/s eta 43s 26% [=========> ] 55,191,085 3.43MB/s eta 43s 26% [=========> ] 56,218,157 3.53MB/s eta 43s 27% [=========> ] 57,193,005 3.62MB/s eta 41s 27% [=========> ] 58,098,221 3.66MB/s eta 41s 28% [=========> ] 58,829,357 3.65MB/s eta 41s 28% [==========> ] 59,734,573 3.84MB/s eta 41s 28% [==========> ] 60,570,157 3.88MB/s eta 41s 29% [==========> ] 61,719,085 3.96MB/s eta 40s 30% [==========> ] 62,850,605 3.98MB/s eta 40s 30% [==========> ] 64,069,165 4.01MB/s eta 40s 31% [===========> ] 65,218,093 3.86MB/s eta 40s 31% [===========> ] 65,357,357 3.64MB/s eta 39s 31% [===========> ] 65,775,149 3.49MB/s eta 39s 31% [===========> ] 66,575,917 3.47MB/s eta 39s 32% [===========> ] 67,759,661 3.58MB/s eta 39s 32% [===========> ] 68,960,813 3.69MB/s eta 39s 33% [============> ] 69,953,069 3.65MB/s eta 37s 33% [============> ] 70,980,141 3.68MB/s eta 37s 34% [============> ] 72,111,661 3.74MB/s eta 37s 34% [============> ] 73,016,877 3.79MB/s eta 37s 35% [============> ] 73,730,605 3.73MB/s eta 37s 35% [============> ] 74,931,757 3.83MB/s eta 36s 36% [=============> ] 75,924,013 3.78MB/s eta 36s 36% [=============> ] 77,334,061 3.85MB/s eta 36s 37% [=============> ] 78,796,333 3.94MB/s eta 36s 38% [=============> ] 80,188,973 4.25MB/s eta 36s 38% [==============> ] 81,424,941 4.51MB/s eta 33s 39% [==============> ] 82,312,749 4.62MB/s eta 33s 39% [==============> ] 83,113,517 4.70MB/s eta 33s 40% [==============> ] 83,949,101 4.61MB/s eta 33s 40% [==============> ] 85,202,477 4.63MB/s eta 33s 41% [===============> ] 85,846,573 4.51MB/s eta 32s 41% [===============> ] 86,281,773 4.34MB/s eta 32s 41% [===============> ] 86,786,605 4.19MB/s eta 32s 41% [===============> ] 87,274,029 4.04MB/s eta 32s 41% [===============> ] 87,691,821 3.95MB/s eta 32s 42% [===============> ] 88,231,469 3.83MB/s eta 32s 42% [===============> ] 89,223,725 3.79MB/s eta 32s 43% [===============> ] 90,198,573 3.70MB/s eta 32s 43% [===============> ] 90,763,784 3.51MB/s eta 32s 43% [================> ] 91,417,133 3.32MB/s eta 32s 44% [================> ] 92,287,533 3.26MB/s eta 31s 44% [================> ] 93,105,709 3.13MB/s eta 31s 44% [================> ] 93,871,661 3.14MB/s eta 31s 45% [================> ] 94,759,469 3.17MB/s eta 31s 45% [================> ] 95,560,237 3.16MB/s eta 31s 46% [================> ] 96,413,229 3.00MB/s eta 30s 46% [=================> ] 97,283,629 3.11MB/s eta 30s 46% [=================> ] 97,927,725 3.15MB/s eta 30s 47% [=================> ] 98,302,509 3.16MB/s eta 30s 47% [=================> ] 98,711,085 3.12MB/s eta 30s 47% [=================> ] 99,215,917 3.14MB/s eta 29s 47% [=================> ] 99,703,341 3.12MB/s eta 29s 47% [=================> ] 100,068,909 2.93MB/s eta 29s 48% [=================> ] 100,538,925 2.82MB/s eta 29s 48% [=================> ] 100,939,309 2.76MB/s eta 29s 48% [=================> ] 101,426,733 2.68MB/s eta 29s 48% [==================> ] 101,896,749 2.58MB/s eta 29s 48% [==================> ] 102,331,949 2.43MB/s eta 29s 49% [==================> ] 102,767,149 2.32MB/s eta 29s 49% [==================> ] 103,132,717 2.19MB/s eta 29s 49% [==================> ] 103,219,757 1.95MB/s eta 30s 49% [==================> ] 103,298,605 1.76MB/s eta 30s 49% [==================> ] 103,376,429 1.58MB/s eta 30s 49% [==================> ] 103,463,469 1.47MB/s eta 30s 49% [==================> ] 103,567,917 1.38MB/s eta 30s 49% [==================> ] 103,672,365 1.27MB/s eta 30s 49% [==================> ] 103,741,997 1.13MB/s eta 30s 49% [==================> ] 103,794,221 1.05MB/s eta 30s 49% [==================> ] 103,838,253 979KB/s eta 30s 49% [==================> ] 103,881,261 828KB/s eta 30s 49% [==================> ] 103,950,893 734KB/s eta 32s 49% [==================> ] 104,029,741 646KB/s eta 32s 49% [==================> ] 104,107,565 497KB/s eta 32s 49% [==================> ] 104,212,013 442KB/s eta 32s 49% [==================> ] 104,325,677 369KB/s eta 32s 49% [==================> ] 104,455,725 344KB/s eta 32s 50% [==================> ] 104,612,397 365KB/s eta 32s 50% [==================> ] 104,821,293 400KB/s eta 32s 50% [==================> ] 105,186,861 476KB/s eta 32s 50% [==================> ] 105,761,325 607KB/s eta 32s 50% [==================> ] 106,370,605 744KB/s eta 32s 51% [==================> ] 106,979,885 911KB/s eta 32s 51% [===================> ] 107,467,309 1022KB/s eta 32s 51% [===================> ] 107,867,693 1.09MB/s eta 32s 51% [===================> ] 108,459,565 1.29MB/s eta 32s 52% [===================> ] 109,051,437 1.43MB/s eta 32s 52% [===================> ] 109,573,677 1.54MB/s eta 32s 52% [===================> ] 110,478,893 1.81MB/s eta 32s 53% [===================> ] 111,801,901 2.13MB/s eta 32s 54% [====================> ] 113,229,357 2.46MB/s eta 32s 54% [====================> ] 114,378,285 2.82MB/s eta 30s 55% [====================> ] 115,649,069 3.09MB/s eta 30s 55% [====================> ] 116,693,549 3.29MB/s eta 30s 56% [====================> ] 117,703,213 3.55MB/s eta 30s 56% [=====================> ] 119,113,261 3.77MB/s eta 30s 57% [=====================> ] 120,001,069 3.83MB/s eta 27s 57% [=====================> ] 121,010,733 3.94MB/s eta 27s 58% [=====================> ] 122,037,805 4.13MB/s eta 27s 58% [=====================> ] 123,134,509 4.28MB/s eta 27s 59% [======================> ] 124,353,069 4.45MB/s eta 27s 60% [======================> ] 126,059,053 4.82MB/s eta 25s 61% [======================> ] 127,695,405 5.10MB/s eta 25s 61% [=======================> ] 128,662,061 5.14MB/s eta 25s 62% [=======================> ] 129,679,917 5.13MB/s eta 25s 62% [=======================> ] 130,985,517 5.11MB/s eta 25s 63% [=======================> ] 131,925,549 5.01MB/s eta 23s 63% [=======================> ] 133,335,597 5.04MB/s eta 23s 64% [========================> ] 134,884,909 5.16MB/s eta 23s 65% [========================> ] 136,312,365 5.28MB/s eta 23s 65% [========================> ] 137,530,925 5.27MB/s eta 23s 66% [========================> ] 139,010,605 5.34MB/s eta 20s 67% [=========================> ] 140,298,797 5.48MB/s eta 20s 67% [=========================> ] 141,656,621 5.56MB/s eta 20s 68% [=========================> ] 142,718,509 5.54MB/s eta 20s 68% [=========================> ] 144,111,149 5.61MB/s eta 20s 69% [==========================> ] 145,033,773 5.45MB/s eta 18s 70% [==========================> ] 146,391,597 5.40MB/s eta 18s 70% [==========================> ] 147,819,053 5.40MB/s eta 18s 71% [==========================> ] 148,950,573 5.52MB/s eta 18s 71% [==========================> ] 149,820,973 5.37MB/s eta 18s 72% [===========================> ] 150,761,005 5.36MB/s eta 16s 72% [===========================> ] 151,753,261 5.28MB/s eta 16s 73% [===========================> ] 152,832,557 5.17MB/s eta 16s 73% [===========================> ] 153,929,261 5.09MB/s eta 16s 74% [===========================> ] 155,060,781 5.02MB/s eta 16s 74% [============================> ] 156,244,525 4.96MB/s eta 15s 75% [============================> ] 157,358,637 4.89MB/s eta 15s 75% [============================> ] 158,420,525 4.80MB/s eta 15s 76% [============================> ] 159,447,597 4.78MB/s eta 15s 76% [============================> ] 160,544,301 4.75MB/s eta 15s 77% [=============================> ] 161,101,357 4.59MB/s eta 13s 77% [=============================> ] 161,658,413 4.36MB/s eta 13s 77% [=============================> ] 162,111,021 4.11MB/s eta 13s 77% [=============================> ] 162,668,077 3.89MB/s eta 13s 78% [=============================> ] 163,120,685 3.76MB/s eta 13s 78% [=============================> ] 163,512,877 3.65MB/s eta 13s 78% [=============================> ] 164,078,125 3.50MB/s eta 13s 78% [=============================> ] 164,704,813 3.37MB/s eta 13s 78% [=============================> ] 164,878,893 3.18MB/s eta 13s 79% [=============================> ] 165,157,421 2.96MB/s eta 13s 79% [=============================> ] 165,801,517 2.75MB/s eta 12s 79% [==============================> ] 166,567,469 2.68MB/s eta 12s 80% [==============================> ] 167,385,645 2.64MB/s eta 12s 80% [==============================> ] 167,481,901 2.42MB/s eta 12s 80% [==============================> ] 168,325,677 2.41MB/s eta 12s 80% [==============================> ] 169,021,997 2.30MB/s eta 11s 81% [==============================> ] 169,787,949 2.32MB/s eta 11s 81% [==============================> ] 170,553,901 2.36MB/s eta 11s 81% [==============================> ] 171,354,669 2.46MB/s eta 11s 82% [===============================> ] 171,929,133 2.47MB/s eta 11s 82% [===============================> ] 172,451,373 2.47MB/s eta 10s 82% [===============================> ] 173,443,629 2.63MB/s eta 10s 83% [===============================> ] 174,609,965 2.82MB/s eta 10s 84% [===============================> ] 175,828,525 2.97MB/s eta 10s 84% [===============================> ] 176,820,781 3.13MB/s eta 10s 85% [================================> ] 177,795,629 3.39MB/s eta 9s 85% [================================> ] 178,857,517 3.49MB/s eta 9s 86% [================================> ] 179,936,813 3.57MB/s eta 9s 86% [================================> ] 180,911,661 3.82MB/s eta 9s 87% [================================> ] 181,956,141 3.88MB/s eta 9s 87% [=================================> ] 183,401,005 4.05MB/s eta 7s 88% [=================================> ] 184,967,725 4.32MB/s eta 7s 88% [=================================> ] 185,594,413 4.27MB/s eta 7s 89% [=================================> ] 186,412,589 4.26MB/s eta 7s 89% [=================================> ] 187,370,029 4.40MB/s eta 7s 90% [==================================> ] 188,284,461 4.46MB/s eta 6s 90% [==================================> ] 189,041,197 4.43MB/s eta 6s 90% [==================================> ] 189,981,229 4.36MB/s eta 6s 91% [==================================> ] 190,781,997 4.26MB/s eta 6s 91% [==================================> ] 191,756,845 4.24MB/s eta 6s 92% [==================================> ] 192,731,693 4.24MB/s eta 5s 92% [===================================> ] 193,758,765 4.23MB/s eta 5s 93% [===================================> ] 195,116,589 4.32MB/s eta 5s 94% [===================================> ] 196,953,645 4.55MB/s eta 5s 94% [====================================> ] 198,545,965 4.71MB/s eta 5s 95% [====================================> ] 200,147,501 4.81MB/s eta 2s 96% [====================================> ] 201,487,917 4.69MB/s eta 2s 96% [====================================> ] 202,758,701 4.84MB/s eta 2s 97% [=====================================> ] 204,317,229 5.03MB/s eta 2s 98% [=====================================> ] 205,822,509 5.24MB/s eta 2s 99% [=====================================> ] 207,110,701 5.31MB/s eta 1s 99% [=====================================> ] 208,607,789 5.50MB/s eta 1s 100%[======================================>] 209,040,994 5.60MB/s in 56s 2017-10-21 14:19:53 (3.56 MB/s) - ‘/tmp/RtmpQSbnN5/ANTsRCore_0.4.2.1_R_x86_64-pc-linux-gnu.tar.gz’ saved [209040994/209040994] Installing package into ‘/usr/local/lib/R/site-library’ (as ‘lib’ is unspecified) * installing *binary* package ‘ANTsRCore’ ... * DONE (ANTsRCore) Rewriting new remotes: stnava/ANTsR Installing repos c("stnava/ANTsR") [1] "stnava/ANTsR" OK (HTTP 200).OK (HTTP 200).Table is tag_name zipball_url 18 test https://api.github.com/repos/ANTsX/ANTsR/zipball/test 3 latest https://api.github.com/repos/ANTsX/ANTsR/zipball/latest 11 latest https://api.github.com/repos/ANTsX/ANTsR/zipball/latest 2 beta https://api.github.com/repos/ANTsX/ANTsR/zipball/beta 25 v0.3 https://api.github.com/repos/ANTsX/ANTsR/zipball/v0.3 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 NA.16 NA.17 NA.18 NA.19 NA.20 NA.21 NA.22 NA.23 tarball_url 18 https://api.github.com/repos/ANTsX/ANTsR/tarball/test 3 https://api.github.com/repos/ANTsX/ANTsR/tarball/latest 11 https://api.github.com/repos/ANTsX/ANTsR/tarball/latest 2 https://api.github.com/repos/ANTsX/ANTsR/tarball/beta 25 https://api.github.com/repos/ANTsX/ANTsR/tarball/v0.3 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 NA.16 NA.17 NA.18 NA.19 NA.20 NA.21 NA.22 NA.23 commit.sha 18 4818e8f8cdae6e30c5a3867eeaf2f0452d3bf9cf 3 4818e8f8cdae6e30c5a3867eeaf2f0452d3bf9cf 11 4818e8f8cdae6e30c5a3867eeaf2f0452d3bf9cf 2 ef279d646be2badaf1353b21bcb290b2440f63fd 25 d7e05c314f402b4e9350150b2bfbe117f6018bf7 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 NA.16 NA.17 NA.18 NA.19 NA.20 NA.21 NA.22 NA.23 commit.url 18 https://api.github.com/repos/ANTsX/ANTsR/commits/4818e8f8cdae6e30c5a3867eeaf2f0452d3bf9cf 3 https://api.github.com/repos/ANTsX/ANTsR/commits/4818e8f8cdae6e30c5a3867eeaf2f0452d3bf9cf 11 https://api.github.com/repos/ANTsX/ANTsR/commits/4818e8f8cdae6e30c5a3867eeaf2f0452d3bf9cf 2 https://api.github.com/repos/ANTsX/ANTsR/commits/ef279d646be2badaf1353b21bcb290b2440f63fd 25 https://api.github.com/repos/ANTsX/ANTsR/commits/d7e05c314f402b4e9350150b2bfbe117f6018bf7 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 NA.16 NA.17 NA.18 NA.19 NA.20 NA.21 NA.22 NA.23 url 18 https://api.github.com/repos/ANTsX/ANTsR/releases/7466802 3 https://api.github.com/repos/ANTsX/ANTsR/releases/2456962 11 https://api.github.com/repos/ANTsX/ANTsR/releases/2456962 2 https://api.github.com/repos/ANTsX/ANTsR/releases/5641666 25 https://api.github.com/repos/ANTsX/ANTsR/releases/1085979 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 NA.16 NA.17 NA.18 NA.19 NA.20 NA.21 NA.22 NA.23 assets_url 18 https://api.github.com/repos/ANTsX/ANTsR/releases/7466802/assets 3 https://api.github.com/repos/ANTsX/ANTsR/releases/2456962/assets 11 https://api.github.com/repos/ANTsX/ANTsR/releases/2456962/assets 2 https://api.github.com/repos/ANTsX/ANTsR/releases/5641666/assets 25 https://api.github.com/repos/ANTsX/ANTsR/releases/1085979/assets NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 NA.16 NA.17 NA.18 NA.19 NA.20 NA.21 NA.22 NA.23 upload_url 18 https://uploads.github.com/repos/ANTsX/ANTsR/releases/7466802/assets{?name,label} 3 https://uploads.github.com/repos/ANTsX/ANTsR/releases/2456962/assets{?name,label} 11 https://uploads.github.com/repos/ANTsX/ANTsR/releases/2456962/assets{?name,label} 2 https://uploads.github.com/repos/ANTsX/ANTsR/releases/5641666/assets{?name,label} 25 https://uploads.github.com/repos/ANTsX/ANTsR/releases/1085979/assets{?name,label} NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 NA.16 NA.17 NA.18 NA.19 NA.20 NA.21 NA.22 NA.23 id asset_updated_at asset_created_at created_at 18 7466802 2017-08-21 19:26:46 2017-08-21 19:26:45 2017-08-21 15:25:43 3 2456962 2017-08-21 18:27:20 2017-08-21 18:27:19 2017-08-21 15:32:35 11 2456962 2017-06-16 14:57:14 2017-06-16 14:57:13 2017-08-21 15:32:35 2 5641666 2017-03-04 22:23:09 2017-03-04 22:23:07 2017-03-04 21:50:34 25 1085979 2015-03-24 18:48:45 2015-03-24 18:48:40 2015-03-24 18:07:13 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 NA.16 NA.17 NA.18 NA.19 NA.20 NA.21 NA.22 NA.23 published_at asset_name asset_label 18 2017-08-21 16:22:52 ANTsR_0.6.1_R_x86_64-pc-linux-gnu.tar.gz 3 2017-08-21 18:27:20 ANTsR_0.6.1_R_x86_64-pc-linux-gnu.tar.gz 11 2017-08-21 18:27:20 ANTsR_0.6_R_x86_64-pc-linux-gnu.tar.gz 2 2017-03-04 22:23:09 ANTsR_0.4.0_R_x86_64-pc-linux-gnu.tar.gz 25 2015-03-24 18:48:39 ANTsR_1.0_R_x86_64-pc-linux-gnu.tar.gz NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 NA.16 NA.17 NA.18 NA.19 NA.20 NA.21 NA.22 NA.23 asset_download_count 18 77 3 19 11 205 2 100 25 39 NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 NA.16 NA.17 NA.18 NA.19 NA.20 NA.21 NA.22 NA.23 asset_browser_download_url 18 https://github.com/ANTsX/ANTsR/releases/download/test/ANTsR_0.6.1_R_x86_64-pc-linux-gnu.tar.gz 3 https://github.com/ANTsX/ANTsR/releases/download/latest/ANTsR_0.6.1_R_x86_64-pc-linux-gnu.tar.gz 11 https://github.com/ANTsX/ANTsR/releases/download/latest/ANTsR_0.6_R_x86_64-pc-linux-gnu.tar.gz 2 https://github.com/ANTsX/ANTsR/releases/download/beta/ANTsR_0.4.0_R_x86_64-pc-linux-gnu.tar.gz 25 https://github.com/ANTsX/ANTsR/releases/download/v0.3/ANTsR_1.0_R_x86_64-pc-linux-gnu.tar.gz NA NA.1 NA.2 NA.3 NA.4 NA.5 NA.6 NA.7 NA.8 NA.9 NA.10 NA.11 NA.12 NA.13 NA.14 NA.15 NA.16 NA.17 NA.18 NA.19 NA.20 NA.21 NA.22 NA.23 Installing ANTsR package binaries --2017-10-21 14:20:28-- https://github.com/ANTsX/ANTsR/releases/download/test/ANTsR_0.6.1_R_x86_64-pc-linux-gnu.tar.gz Resolving github.com (github.com)... 192.30.253.113, 192.30.253.112 Connecting to github.com (github.com)|192.30.253.113|:443... connected. HTTP request sent, awaiting response... 302 Found Location: https://github-production-release-asset-2e65be.s3.amazonaws.com/5782626/23fa6366-8685-11e7-9820-b5a9048cbd01?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20171021%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20171021T142028Z&X-Amz-Expires=300&X-Amz-Signature=6f6cd22ca6af0cb2d447172db567ea549bc5f4992421ef601be13218f05cd014&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3DANTsR_0.6.1_R_x86_64-pc-linux-gnu.tar.gz&response-content-type=application%2Foctet-stream [following] --2017-10-21 14:20:28-- https://github-production-release-asset-2e65be.s3.amazonaws.com/5782626/23fa6366-8685-11e7-9820-b5a9048cbd01?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20171021%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20171021T142028Z&X-Amz-Expires=300&X-Amz-Signature=6f6cd22ca6af0cb2d447172db567ea549bc5f4992421ef601be13218f05cd014&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3DANTsR_0.6.1_R_x86_64-pc-linux-gnu.tar.gz&response-content-type=application%2Foctet-stream Resolving github-production-release-asset-2e65be.s3.amazonaws.com (github-production-release-asset-2e65be.s3.amazonaws.com)... 52.216.20.235 Connecting to github-production-release-asset-2e65be.s3.amazonaws.com (github-production-release-asset-2e65be.s3.amazonaws.com)|52.216.20.235|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 28468211 (27M) [application/octet-stream] Saving to: ‘/tmp/Rtmp0FyYwS/ANTsR_0.6.1_R_x86_64-pc-linux-gnu.tar.gz’ 0% [ ] 0 --.-K/s 0% [ ] 216,628 966KB/s 3% [> ] 947,764 2.07MB/s 7% [==> ] 2,253,364 3.28MB/s 12% [===> ] 3,506,740 3.83MB/s 17% [=====> ] 4,881,972 4.26MB/s 22% [=======> ] 6,431,284 4.68MB/s 26% [=========> ] 7,606,836 4.74MB/s 31% [===========> ] 8,903,220 4.86MB/s 36% [=============> ] 10,452,532 5.07MB/s 42% [===============> ] 12,123,700 5.29MB/s 46% [=================> ] 13,290,036 5.27MB/s 51% [==================> ] 14,543,412 5.29MB/s 55% [====================> ] 15,918,644 5.34MB/s 62% [=======================> ] 17,703,476 5.52MB/s eta 2s 68% [=========================> ] 19,469,876 5.67MB/s eta 2s 72% [===========================> ] 20,723,252 5.91MB/s eta 2s 79% [=============================> ] 22,603,316 6.25MB/s eta 2s 84% [===============================> ] 23,978,548 6.34MB/s eta 2s 90% [==================================> ] 25,667,124 6.47MB/s eta 0s 96% [====================================> ] 27,582,004 6.64MB/s eta 0s 100%[======================================>] 28,468,211 6.75MB/s in 4.4s 2017-10-21 14:20:33 (6.12 MB/s) - ‘/tmp/Rtmp0FyYwS/ANTsR_0.6.1_R_x86_64-pc-linux-gnu.tar.gz’ saved [28468211/28468211] Installing package into ‘/usr/local/lib/R/site-library’ (as ‘lib’ is unspecified) * installing *binary* package ‘ANTsR’ ... * DONE (ANTsR) Rewriting new remotes: Package: LESYMAP Title: Leions to Symptom Mapping in R Version: 0.0.0.9003 Date: 2017-06-07 Authors@R: person("Dorian", "Pustina", email='dorian.pustina@uphs.upenn.edu', role = c("aut", "cre")) Description: LESYMAP maps the specific brain areas responsible for cognitive deficits by taking a series of lesion maps and a vector of behavioral scores. Both univariate (t-test, Brunner-Munzel, regression) and multivariate (sparse canonical corelations) tests are available. LESYMAP is built to run both real and simulated lesion-to-symptom mapping analyses. License: Apache License 2.0 Encoding: UTF-8 LazyData: true Depends: R (>= 3.0), ANTsR Imports: ANTsRCore, graphics, lmPerm, nparcomp, Rcpp, stats, utils LinkingTo: Rcpp, RcppArmadillo NeedsCompilation: yes RoxygenNote: 6.0.1.9000 Reordering Remotes Remote order: NULL Package: LESYMAP Title: Leions to Symptom Mapping in R Version: 0.0.0.9003 Date: 2017-06-07 Authors@R: person("Dorian", "Pustina", email='dorian.pustina@uphs.upenn.edu', role = c("aut", "cre")) Description: LESYMAP maps the specific brain areas responsible for cognitive deficits by taking a series of lesion maps and a vector of behavioral scores. Both univariate (t-test, Brunner-Munzel, regression) and multivariate (sparse canonical corelations) tests are available. LESYMAP is built to run both real and simulated lesion-to-symptom mapping analyses. License: Apache License 2.0 Encoding: UTF-8 LazyData: true Depends: R (>= 3.0), ANTsR Imports: ANTsRCore, graphics, lmPerm, nparcomp, Rcpp, stats, utils LinkingTo: Rcpp, RcppArmadillo NeedsCompilation: yes RoxygenNote: 6.0.1.9000 travis_time:end:047b0aee:start=1508595350727530539,finish=1508595638805687424,duration=288078156885 travis_fold:end:before_install.8 travis_fold:start:before_install.9 travis_time:start:04441695 $ rm antsr_travis.sh travis_time:end:04441695:start=1508595638818427568,finish=1508595638829514291,duration=11086723 travis_fold:end:before_install.9 travis_fold:start:before_install.10 travis_time:start:20593e1e $ cat DESCRIPTION Package: LESYMAP Title: Leions to Symptom Mapping in R Version: 0.0.0.9003 Date: 2017-06-07 Authors@R: person("Dorian", "Pustina", email='dorian.pustina@uphs.upenn.edu', role = c("aut", "cre")) Description: LESYMAP maps the specific brain areas responsible for cognitive deficits by taking a series of lesion maps and a vector of behavioral scores. Both univariate (t-test, Brunner-Munzel, regression) and multivariate (sparse canonical corelations) tests are available. LESYMAP is built to run both real and simulated lesion-to-symptom mapping analyses. License: Apache License 2.0 Encoding: UTF-8 LazyData: true Depends: R (>= 3.0), ANTsR Imports: ANTsRCore, graphics, lmPerm, nparcomp, Rcpp, stats, utils LinkingTo: Rcpp, RcppArmadillo NeedsCompilation: yes RoxygenNote: 6.0.1.9000 travis_time:end:20593e1e:start=1508595638840620263,finish=1508595638851539420,duration=10919157 travis_fold:end:before_install.10 travis_fold:start:R-dependencies Installing package dependencies Installing *binary* R packages: devtools Installing apt packages: r-cran-devtools travis_time:start:08a82367 $ sudo apt-get install -y r-cran-devtools Reading package lists... 0% Reading package lists... 100% Reading package lists... Done Building dependency tree... 0% Building dependency tree... 0% Building dependency tree... 50% Building dependency tree... 50% Building dependency tree Reading state information... 0% Reading state information... 0% Reading state information... Done The following additional packages will be installed: curl libcurl3 libcurl4-openssl-dev libpaper-utils libpaper1 r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-curl r-cran-digest r-cran-foreign r-cran-git2r r-cran-httr r-cran-jsonlite r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-nlme r-cran-nnet r-cran-openssl r-cran-r6 r-cran-rpart r-cran-rstudioapi r-cran-spatial r-cran-survival r-cran-whisker r-cran-withr r-doc-html r-recommended Suggested packages: libcurl4-doc libcurl3-dbg ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra The following packages will be REMOVED: libcurl4-gnutls-dev The following NEW packages will be installed: libcurl4-openssl-dev libpaper-utils libpaper1 r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-curl r-cran-devtools r-cran-digest r-cran-foreign r-cran-git2r r-cran-httr r-cran-jsonlite r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-nlme r-cran-nnet r-cran-openssl r-cran-r6 r-cran-rpart r-cran-rstudioapi r-cran-spatial r-cran-survival r-cran-whisker r-cran-withr r-doc-html r-recommended The following packages will be upgraded: curl libcurl3 2 upgraded, 35 newly installed, 1 to remove and 93 not upgraded. Need to get 44.6 MB of archives. After this operation, 75.7 MB of additional disk space will be used. 0% [Working] Get:1 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/main amd64 curl amd64 7.35.0-1ubuntu2.11 [123 kB] 0% [1 curl 13.6 kB/123 kB 11%] [Connecting to ppa.launchpad.net (91.189.95.83)] 1% [Connecting to ppa.launchpad.net (91.189.95.83)] Get:2 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libcurl3 amd64 7.35.0-1ubuntu2.11 [174 kB] 1% [2 libcurl3 0 B/174 kB 0%] [Connecting to ppa.launchpad.net (91.189.95.83)] 2% [Connecting to ppa.launchpad.net (91.189.95.83)] Get:3 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libpaper1 amd64 1.1.24+nmu2ubuntu3 [13.4 kB] 2% [3 libpaper1 0 B/13.4 kB 0%] [Connecting to ppa.launchpad.net (91.189.95.83) 2% [Connecting to ppa.launchpad.net (91.189.95.83)] Get:4 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libcurl4-openssl-dev amd64 7.35.0-1ubuntu2.11 [245 kB] 2% [4 libcurl4-openssl-dev 0 B/245 kB 0%] [Connecting to ppa.launchpad.net (91. 3% [Connecting to ppa.launchpad.net (91.189.95.83)] Get:5 http://us-central1.gce.archive.ubuntu.com/ubuntu trusty/main amd64 libpaper-utils amd64 1.1.24+nmu2ubuntu3 [8,244 B] 3% [5 libpaper-utils 0 B/8,244 B 0%] [Connecting to ppa.launchpad.net (91.189.9 4% [Connecting to ppa.launchpad.net (91.189.95.83)] Get:6 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-curl amd64 3.0-1cran1ppa0trusty0 [363 kB] 4% [6 r-cran-curl 4,896 B/363 kB 1%] Get:7 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-base-core 3.4.2-1trusty1 [23.1 MB] 4% [7 r-base-core 0 B/23.1 MB 0%] [6 r-cran-curl 12.6 kB/363 kB 3%] 31% [7 r-base-core 14.6 MB/23.1 MB 63%] [6 r-cran-curl 319 kB/363 kB 88%] 33% [7 r-base-core 15.9 MB/23.1 MB 69%] Get:8 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-jsonlite amd64 1.5-1cran1ppa0trusty0 [582 kB] 46% [7 r-base-core 22.7 MB/23.1 MB 98%] [8 r-cran-jsonlite 0 B/582 kB 0%] 47% [8 r-cran-jsonlite 12.6 kB/582 kB 2%] Get:9 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-base-dev 3.4.2-1trusty1 [4,412 B] 47% [9 r-base-dev 4,412 B/4,412 B 100%] [8 r-cran-jsonlite 12.6 kB/582 kB 2%] 47% [8 r-cran-jsonlite 12.6 kB/582 kB 2%] Get:10 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-boot 1.3-20-1trusty0 [617 kB] 47% [10 r-cran-boot 0 B/617 kB 0%] [8 r-cran-jsonlite 12.6 kB/582 kB 2%] 49% [8 r-cran-jsonlite 12.6 kB/582 kB 2%] Get:11 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-mass 7.3-47-1trusty0 [1,102 kB] 49% [11 r-cran-mass 15.8 kB/1,102 kB 1%] [8 r-cran-jsonlite 12.6 kB/582 kB 2%] 52% [8 r-cran-jsonlite 38.4 kB/582 kB 7%] Get:12 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-class 7.3-14-2trusty0 [86.4 kB] 52% [12 r-cran-class 0 B/86.4 kB 0%] [8 r-cran-jsonlite 38.4 kB/582 kB 7%] 52% [8 r-cran-jsonlite 38.4 kB/582 kB 7%] Get:13 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-cluster 2.0.6-2trusty0 [520 kB] 52% [13 r-cran-cluster 0 B/520 kB 0%] [8 r-cran-jsonlite 38.4 kB/582 kB 7%] 54% [8 r-cran-jsonlite 38.4 kB/582 kB 7%] Get:14 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-codetools 0.2-15-1cran1trusty0 [45.0 kB] 54% [14 r-cran-codetools 0 B/45.0 kB 0%] [8 r-cran-jsonlite 38.4 kB/582 kB 7%] 54% [8 r-cran-jsonlite 38.4 kB/582 kB 7%] Get:15 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-foreign 0.8.69-1trusty0 [243 kB] 54% [15 r-cran-foreign 0 B/243 kB 0%] [8 r-cran-jsonlite 38.4 kB/582 kB 7%] 55% [8 r-cran-jsonlite 38.4 kB/582 kB 7%] Get:16 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-kernsmooth 2.23-15-3trusty0 [89.8 kB] 56% [16 r-cran-kernsmooth 0 B/89.8 kB 0%] [8 r-cran-jsonlite 65.3 kB/582 kB 11% 56% [8 r-cran-jsonlite 89.9 kB/582 kB 15%] Get:17 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-lattice 0.20-35-1cran1trusty0 [719 kB] 56% [17 r-cran-lattice 0 B/719 kB 0%] [8 r-cran-jsonlite 89.9 kB/582 kB 15%] 58% [8 r-cran-jsonlite 89.9 kB/582 kB 15%] Get:18 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-matrix 1.2-11-1trusty0 [2,375 kB] 58% [18 r-cran-matrix 15.8 kB/2,375 kB 1%] [8 r-cran-jsonlite 89.9 kB/582 kB 15 63% [8 r-cran-jsonlite 131 kB/582 kB 23%] Get:19 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-nlme 3.1.131-3trusty0 [2,197 kB] 63% [19 r-cran-nlme 0 B/2,197 kB 0%] [8 r-cran-jsonlite 131 kB/582 kB 23%] 67% [8 r-cran-jsonlite 149 kB/582 kB 26%] Get:20 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-mgcv 1.8-22-1cran1trusty0 [2,511 kB] 67% [20 r-cran-mgcv 15.8 kB/2,511 kB 1%] [8 r-cran-jsonlite 149 kB/582 kB 26%] 73% [8 r-cran-jsonlite 246 kB/582 kB 42%] Get:21 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-nnet 7.3-12-2trusty0 [110 kB] 73% [21 r-cran-nnet 15.8 kB/110 kB 14%] [8 r-cran-jsonlite 246 kB/582 kB 42%] 73% [8 r-cran-jsonlite 246 kB/582 kB 42%] Get:22 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-survival 2.41-3-2trusty0 [5,135 kB] 73% [22 r-cran-survival 15.8 kB/5,135 kB 0%] [8 r-cran-jsonlite 246 kB/582 kB 4 83% [8 r-cran-jsonlite 351 kB/582 kB 60%] Get:23 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-cran-rpart 4.1-11-1trusty0 [885 kB] 83% [23 r-cran-rpart 15.8 kB/885 kB 2%] [8 r-cran-jsonlite 351 kB/582 kB 60%] 86% [8 r-cran-jsonlite 351 kB/582 kB 60%] Get:24 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-doc-html 3.4.2-1trusty1 [554 kB] 86% [24 r-doc-html 0 B/554 kB 0%] [8 r-cran-jsonlite 351 kB/582 kB 60%] 87% [8 r-cran-jsonlite 351 kB/582 kB 60%] Get:25 https://cloud.r-project.org/bin/linux/ubuntu trusty/ r-recommended 3.4.2-1trusty1 [2,746 B] 87% [25 r-recommended 2,746 B/2,746 B 100%] [8 r-cran-jsonlite 351 kB/582 kB 60 88% [8 r-cran-jsonlite 351 kB/582 kB 60%] 89% [Working] Get:26 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-mime amd64 0.5-1cran2ppa0trusty1 [25.5 kB] 89% [26 r-cran-mime 12.6 kB/25.5 kB 49%] 89% [Working] Get:27 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-openssl amd64 0.9.7-1cran1ppa0trusty0 [516 kB] 89% [27 r-cran-openssl 7,472 B/516 kB 1%] 89% [27 r-cran-openssl 184 kB/516 kB 36%] 90% [27 r-cran-openssl 436 kB/516 kB 85%] 91% [Working] Get:28 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-r6 all 2.2.2-1cran1ppa0trusty0 [223 kB] 91% [28 r-cran-r6 7,472 B/223 kB 3%] 92% [Working] Get:29 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-httr all 1.3.1-1cran1ppa0trusty0 [267 kB] 92% [29 r-cran-httr 12.6 kB/267 kB 5%] 92% [29 r-cran-httr 184 kB/267 kB 69%] 93% [Working] Get:30 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-digest amd64 0.6.12-1cran1ppa0trusty1 [111 kB] 93% [30 r-cran-digest 8,760 B/111 kB 8%] 93% [Working] 7,091 kB/s 0s Get:31 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-memoise all 1.1.0-1cran1ppa0trusty0 [27.6 kB] 93% [31 r-cran-memoise 12.6 kB/27.6 kB 46%] 7,091 kB/s 0s 94% [Working] 7,091 kB/s 0s Get:32 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-whisker all 0.3-2-1cran1precise0 [50.5 kB] 94% [32 r-cran-whisker 12.6 kB/50.5 kB 25%] 7,091 kB/s 0s 95% [Working] 7,091 kB/s 0s Get:33 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-rstudioapi all 0.7-1cran1ppa0trusty0 [106 kB] 95% [33 r-cran-rstudioapi 12.6 kB/106 kB 12%] 7,091 kB/s 0s 95% [Working] 7,091 kB/s 0s Get:34 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-git2r amd64 0.19.0-1cran1ppa0trusty0 [841 kB] 95% [34 r-cran-git2r 12.6 kB/841 kB 2%] 7,091 kB/s 0s 96% [34 r-cran-git2r 228 kB/841 kB 27%] 7,091 kB/s 0s 96% [34 r-cran-git2r 431 kB/841 kB 51%] 7,091 kB/s 0s 96% [34 r-cran-git2r 565 kB/841 kB 67%] 7,091 kB/s 0s 97% [34 r-cran-git2r 706 kB/841 kB 84%] 7,091 kB/s 0s 97% [34 r-cran-git2r 828 kB/841 kB 98%] 7,091 kB/s 0s 97% [Working] 7,091 kB/s 0s Get:35 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-withr all 2.0.0-1cran1ppa0trusty0 [57.4 kB] 97% [35 r-cran-withr 12.6 kB/57.4 kB 22%] 7,091 kB/s 0s 98% [Working] 7,091 kB/s 0s Get:36 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-devtools all 1.13.2-1cran1ppa0trusty0 [422 kB] 98% [36 r-cran-devtools 7,472 B/422 kB 2%] 7,091 kB/s 0s 98% [36 r-cran-devtools 96.3 kB/422 kB 23%] 7,091 kB/s 0s 98% [36 r-cran-devtools 214 kB/422 kB 51%] 7,091 kB/s 0s 99% [36 r-cran-devtools 346 kB/422 kB 82%] 232 kB/s 0s 99% [Working] 232 kB/s 0s Get:37 http://ppa.launchpad.net/marutter/c2d4u/ubuntu trusty/main amd64 r-cran-spatial amd64 7.3-11-1cran1ppa0trusty1 [126 kB] 99% [37 r-cran-spatial 12.6 kB/126 kB 10%] 232 kB/s 0s 99% [37 r-cran-spatial 103 kB/126 kB 82%] 232 kB/s 0s 100% [Working] 232 kB/s 0s Fetched 44.6 MB in 13s (3,392 kB/s) Extracting templates from packages: 81% Extracting templates from packages: 100% Preconfiguring packages ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 99068 files and directories currently installed.) Removing libcurl4-gnutls-dev:amd64 (7.35.0-1ubuntu2.10) ... Processing triggers for man-db (2.6.7.1-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 99044 files and directories currently installed.) Preparing to unpack .../curl_7.35.0-1ubuntu2.11_amd64.deb ... Unpacking curl (7.35.0-1ubuntu2.11) over (7.35.0-1ubuntu2.10) ... Preparing to unpack .../libcurl3_7.35.0-1ubuntu2.11_amd64.deb ... Unpacking libcurl3:amd64 (7.35.0-1ubuntu2.11) over (7.35.0-1ubuntu2.10) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../libpaper1_1.1.24+nmu2ubuntu3_amd64.deb ... Unpacking libpaper1:amd64 (1.1.24+nmu2ubuntu3) ... Selecting previously unselected package libcurl4-openssl-dev:amd64. Preparing to unpack .../libcurl4-openssl-dev_7.35.0-1ubuntu2.11_amd64.deb ... Unpacking libcurl4-openssl-dev:amd64 (7.35.0-1ubuntu2.11) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../libpaper-utils_1.1.24+nmu2ubuntu3_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu2ubuntu3) ... Selecting previously unselected package r-base-core. Preparing to unpack .../r-base-core_3.4.2-1trusty1_amd64.deb ... Unpacking r-base-core (3.4.2-1trusty1) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../r-base-dev_3.4.2-1trusty1_all.deb ... Unpacking r-base-dev (3.4.2-1trusty1) ... Selecting previously unselected package r-cran-boot. Preparing to unpack .../r-cran-boot_1.3-20-1trusty0_all.deb ... Unpacking r-cran-boot (1.3-20-1trusty0) ... Selecting previously unselected package r-cran-mass. Preparing to unpack .../r-cran-mass_7.3-47-1trusty0_amd64.deb ... Unpacking r-cran-mass (7.3-47-1trusty0) ... Selecting previously unselected package r-cran-class. Preparing to unpack .../r-cran-class_7.3-14-2trusty0_amd64.deb ... Unpacking r-cran-class (7.3-14-2trusty0) ... Selecting previously unselected package r-cran-cluster. Preparing to unpack .../r-cran-cluster_2.0.6-2trusty0_amd64.deb ... Unpacking r-cran-cluster (2.0.6-2trusty0) ... Selecting previously unselected package r-cran-codetools. Preparing to unpack .../r-cran-codetools_0.2-15-1cran1trusty0_all.deb ... Unpacking r-cran-codetools (0.2-15-1cran1trusty0) ... Selecting previously unselected package r-cran-curl. Preparing to unpack .../r-cran-curl_3.0-1cran1ppa0trusty0_amd64.deb ... Unpacking r-cran-curl (3.0-1cran1ppa0trusty0) ... Selecting previously unselected package r-cran-jsonlite. Preparing to unpack .../r-cran-jsonlite_1.5-1cran1ppa0trusty0_amd64.deb ... Unpacking r-cran-jsonlite (1.5-1cran1ppa0trusty0) ... Selecting previously unselected package r-cran-mime. Preparing to unpack .../r-cran-mime_0.5-1cran2ppa0trusty1_amd64.deb ... Unpacking r-cran-mime (0.5-1cran2ppa0trusty1) ... Selecting previously unselected package r-cran-openssl. Preparing to unpack .../r-cran-openssl_0.9.7-1cran1ppa0trusty0_amd64.deb ... Unpacking r-cran-openssl (0.9.7-1cran1ppa0trusty0) ... Selecting previously unselected package r-cran-r6. Preparing to unpack .../r-cran-r6_2.2.2-1cran1ppa0trusty0_all.deb ... Unpacking r-cran-r6 (2.2.2-1cran1ppa0trusty0) ... Selecting previously unselected package r-cran-httr. Preparing to unpack .../r-cran-httr_1.3.1-1cran1ppa0trusty0_all.deb ... Unpacking r-cran-httr (1.3.1-1cran1ppa0trusty0) ... Selecting previously unselected package r-cran-digest. Preparing to unpack .../r-cran-digest_0.6.12-1cran1ppa0trusty1_amd64.deb ... Unpacking r-cran-digest (0.6.12-1cran1ppa0trusty1) ... Selecting previously unselected package r-cran-memoise. Preparing to unpack .../r-cran-memoise_1.1.0-1cran1ppa0trusty0_all.deb ... Unpacking r-cran-memoise (1.1.0-1cran1ppa0trusty0) ... Selecting previously unselected package r-cran-whisker. Preparing to unpack .../r-cran-whisker_0.3-2-1cran1precise0_all.deb ... Unpacking r-cran-whisker (0.3-2-1cran1precise0) ... Selecting previously unselected package r-cran-rstudioapi. Preparing to unpack .../r-cran-rstudioapi_0.7-1cran1ppa0trusty0_all.deb ... Unpacking r-cran-rstudioapi (0.7-1cran1ppa0trusty0) ... Selecting previously unselected package r-cran-git2r. Preparing to unpack .../r-cran-git2r_0.19.0-1cran1ppa0trusty0_amd64.deb ... Unpacking r-cran-git2r (0.19.0-1cran1ppa0trusty0) ... Selecting previously unselected package r-cran-withr. Preparing to unpack .../r-cran-withr_2.0.0-1cran1ppa0trusty0_all.deb ... Unpacking r-cran-withr (2.0.0-1cran1ppa0trusty0) ... Selecting previously unselected package r-cran-devtools. Preparing to unpack .../r-cran-devtools_1.13.2-1cran1ppa0trusty0_all.deb ... Unpacking r-cran-devtools (1.13.2-1cran1ppa0trusty0) ... Selecting previously unselected package r-cran-foreign. Preparing to unpack .../r-cran-foreign_0.8.69-1trusty0_amd64.deb ... Unpacking r-cran-foreign (0.8.69-1trusty0) ... Selecting previously unselected package r-cran-kernsmooth. Preparing to unpack .../r-cran-kernsmooth_2.23-15-3trusty0_amd64.deb ... Unpacking r-cran-kernsmooth (2.23-15-3trusty0) ... Selecting previously unselected package r-cran-lattice. Preparing to unpack .../r-cran-lattice_0.20-35-1cran1trusty0_amd64.deb ... Unpacking r-cran-lattice (0.20-35-1cran1trusty0) ... Selecting previously unselected package r-cran-matrix. Preparing to unpack .../r-cran-matrix_1.2-11-1trusty0_amd64.deb ... Unpacking r-cran-matrix (1.2-11-1trusty0) ... Selecting previously unselected package r-cran-nlme. Preparing to unpack .../r-cran-nlme_3.1.131-3trusty0_amd64.deb ... Unpacking r-cran-nlme (3.1.131-3trusty0) ... Selecting previously unselected package r-cran-mgcv. Preparing to unpack .../r-cran-mgcv_1.8-22-1cran1trusty0_amd64.deb ... Unpacking r-cran-mgcv (1.8-22-1cran1trusty0) ... Selecting previously unselected package r-cran-nnet. Preparing to unpack .../r-cran-nnet_7.3-12-2trusty0_amd64.deb ... Unpacking r-cran-nnet (7.3-12-2trusty0) ... Selecting previously unselected package r-cran-survival. Preparing to unpack .../r-cran-survival_2.41-3-2trusty0_amd64.deb ... Unpacking r-cran-survival (2.41-3-2trusty0) ... Selecting previously unselected package r-cran-rpart. Preparing to unpack .../r-cran-rpart_4.1-11-1trusty0_amd64.deb ... Unpacking r-cran-rpart (4.1-11-1trusty0) ... Selecting previously unselected package r-cran-spatial. Preparing to unpack .../r-cran-spatial_7.3-11-1cran1ppa0trusty1_amd64.deb ... Unpacking r-cran-spatial (7.3-11-1cran1ppa0trusty1) ... Selecting previously unselected package r-doc-html. Preparing to unpack .../r-doc-html_3.4.2-1trusty1_all.deb ... Unpacking r-doc-html (3.4.2-1trusty1) ... Selecting previously unselected package r-recommended. Preparing to unpack .../r-recommended_3.4.2-1trusty1_all.deb ... Unpacking r-recommended (3.4.2-1trusty1) ... Processing triggers for man-db (2.6.7.1-1ubuntu1) ... Processing triggers for mime-support (3.54ubuntu1.1) ... Processing triggers for hicolor-icon-theme (0.13-1) ... Processing triggers for install-info (5.2.0.dfsg.1-2) ... Setting up libcurl3:amd64 (7.35.0-1ubuntu2.11) ... Setting up curl (7.35.0-1ubuntu2.11) ... Setting up libpaper1:amd64 (1.1.24+nmu2ubuntu3) ... Creating config file /etc/papersize with new version Setting up libcurl4-openssl-dev:amd64 (7.35.0-1ubuntu2.11) ... Setting up libpaper-utils (1.1.24+nmu2ubuntu3) ... Setting up r-base-core (3.4.2-1trusty1) ... Creating config file /etc/R/Renviron with new version Setting up r-base-dev (3.4.2-1trusty1) ... Setting up r-cran-boot (1.3-20-1trusty0) ... Setting up r-cran-mass (7.3-47-1trusty0) ... Setting up r-cran-class (7.3-14-2trusty0) ... Setting up r-cran-cluster (2.0.6-2trusty0) ... Setting up r-cran-codetools (0.2-15-1cran1trusty0) ... Setting up r-cran-curl (3.0-1cran1ppa0trusty0) ... Setting up r-cran-jsonlite (1.5-1cran1ppa0trusty0) ... Setting up r-cran-mime (0.5-1cran2ppa0trusty1) ... Setting up r-cran-openssl (0.9.7-1cran1ppa0trusty0) ... Setting up r-cran-r6 (2.2.2-1cran1ppa0trusty0) ... Setting up r-cran-httr (1.3.1-1cran1ppa0trusty0) ... Setting up r-cran-digest (0.6.12-1cran1ppa0trusty1) ... Setting up r-cran-memoise (1.1.0-1cran1ppa0trusty0) ... Setting up r-cran-whisker (0.3-2-1cran1precise0) ... Setting up r-cran-rstudioapi (0.7-1cran1ppa0trusty0) ... Setting up r-cran-git2r (0.19.0-1cran1ppa0trusty0) ... Setting up r-cran-withr (2.0.0-1cran1ppa0trusty0) ... Setting up r-cran-devtools (1.13.2-1cran1ppa0trusty0) ... Setting up r-cran-foreign (0.8.69-1trusty0) ... Setting up r-cran-kernsmooth (2.23-15-3trusty0) ... Setting up r-cran-lattice (0.20-35-1cran1trusty0) ... Setting up r-cran-matrix (1.2-11-1trusty0) ... Setting up r-cran-nlme (3.1.131-3trusty0) ... Setting up r-cran-mgcv (1.8-22-1cran1trusty0) ... Setting up r-cran-nnet (7.3-12-2trusty0) ... Setting up r-cran-survival (2.41-3-2trusty0) ... Setting up r-cran-rpart (4.1-11-1trusty0) ... Setting up r-cran-spatial (7.3-11-1cran1ppa0trusty1) ... Setting up r-doc-html (3.4.2-1trusty1) ... Setting up r-recommended (3.4.2-1trusty1) ... Processing triggers for libc-bin (2.19-0ubuntu6.13) ... travis_time:end:08a82367:start=1508595638864442830,finish=1508595661882694174,duration=23018251344 travis_time:start:2a2cafa4 $ Rscript -e 'deps <- devtools::dev_package_deps(dependencies = NA);devtools::install_deps(dependencies = TRUE);if (!all(deps$package %in% installed.packages())) { message("missing: ", paste(setdiff(deps$package, installed.packages()), collapse=", ")); q(status = 1, save = "no")}' trying URL 'https://cloud.r-project.org/src/contrib/lmPerm_2.1.0.tar.gz' Content type 'application/x-gzip' length 417035 bytes (407 KB) ================================================== downloaded 407 KB Installing lmPerm '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/RtmpC2rkKa/devtools42884a6e1f9a/lmPerm' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘lmPerm’ ... ** package ‘lmPerm’ successfully unpacked and MD5 sums checked ** libs clang -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c lmPerm.c -o lmPerm.o clang -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o lmPerm.so lmPerm.o -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/lmPerm/libs ** R ** data ** inst ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (lmPerm) trying URL 'https://cloud.r-project.org/src/contrib/nparcomp_2.6.tar.gz' Content type 'application/x-gzip' length 33095 bytes (32 KB) ================================================== downloaded 32 KB Installing nparcomp trying URL 'https://cloud.r-project.org/src/contrib/multcomp_1.4-7.tar.gz' Content type 'application/x-gzip' length 607663 bytes (593 KB) ================================================== downloaded 593 KB Installing multcomp trying URL 'https://cloud.r-project.org/src/contrib/mvtnorm_1.0-6.tar.gz' Content type 'application/x-gzip' length 159232 bytes (155 KB) ================================================== downloaded 155 KB Installing mvtnorm '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/RtmpC2rkKa/devtools42885d30406b/mvtnorm' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘mvtnorm’ ... ** package ‘mvtnorm’ successfully unpacked and MD5 sums checked ** libs clang -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c C_FORTRAN_interface.c -o C_FORTRAN_interface.o clang -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c miwa.c -o miwa.o gfortran -fpic -g -O2 -c mvt.f -o mvt.o clang -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c mvtnorm-init.c -o mvtnorm-init.o gfortran -fpic -g -O2 -c tvpack.f -o tvpack.o clang -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o mvtnorm.so C_FORTRAN_interface.o miwa.o mvt.o mvtnorm-init.o tvpack.o -lgfortran -lm -lquadmath -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/mvtnorm/libs ** R ** inst ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (mvtnorm) trying URL 'https://cloud.r-project.org/src/contrib/sandwich_2.4-0.tar.gz' Content type 'application/x-gzip' length 1280592 bytes (1.2 MB) ================================================== downloaded 1.2 MB Installing sandwich trying URL 'https://cloud.r-project.org/src/contrib/zoo_1.8-0.tar.gz' Content type 'application/x-gzip' length 839729 bytes (820 KB) ================================================== downloaded 820 KB Installing zoo '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL '/tmp/RtmpC2rkKa/devtools4288635d8a99/zoo' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘zoo’ ... ** package ‘zoo’ successfully unpacked and MD5 sums checked ** libs clang -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include -I/home/travis/R-bin/include -fpic -g -O2 -c coredata.c -o coredata.o clang -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include -I/home/travis/R-bin/include -fpic -g -O2 -c init.c -o init.o clang -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include -I/home/travis/R-bin/include -fpic -g -O2 -c lag.c -o lag.o clang -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o zoo.so coredata.o init.o lag.o -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/zoo/libs ** R ** demo ** inst ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (zoo) '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/RtmpC2rkKa/devtools42886705738b/sandwich' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘sandwich’ ... ** package ‘sandwich’ successfully unpacked and MD5 sums checked ** R ** data ** inst ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (sandwich) trying URL 'https://cloud.r-project.org/src/contrib/TH.data_1.0-8.tar.gz' Content type 'application/x-gzip' length 4963504 bytes (4.7 MB) ================================================== downloaded 4.7 MB Installing TH.data '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/RtmpC2rkKa/devtools428844fa461d/TH.data' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘TH.data’ ... ** package ‘TH.data’ successfully unpacked and MD5 sums checked ** data *** moving datasets to lazyload DB ** demo ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (TH.data) '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/RtmpC2rkKa/devtools4288593eca46/multcomp' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘multcomp’ ... ** package ‘multcomp’ successfully unpacked and MD5 sums checked ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (multcomp) Skipping install of 'mvtnorm' from a cran remote, the SHA1 (1.0-6) has not changed since last install. Use `force = TRUE` to force installation '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/RtmpC2rkKa/devtools4288184610c0/nparcomp' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘nparcomp’ ... ** package ‘nparcomp’ successfully unpacked and MD5 sums checked ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nparcomp) trying URL 'https://cloud.r-project.org/src/contrib/RcppArmadillo_0.8.100.1.0.tar.gz' Content type 'application/x-gzip' length 1312598 bytes (1.3 MB) ================================================== downloaded 1.3 MB Installing RcppArmadillo '/home/travis/R-bin/lib/R/bin/R' --no-site-file --no-environ --no-save \ --no-restore --quiet CMD INSTALL \ '/tmp/RtmpC2rkKa/devtools42884f7f92ce/RcppArmadillo' \ --library='/usr/local/lib/R/site-library' --install-tests * installing *source* package ‘RcppArmadillo’ ... ** package ‘RcppArmadillo’ successfully unpacked and MD5 sums checked checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether clang++ accepts -g... yes checking how to run the C++ preprocessor... clang++ -E checking whether we are using the GNU C++ compiler... (cached) yes checking whether clang++ accepts -g... (cached) yes checking whether g++ version is sufficient... checking LAPACK_LIBS... fallback LAPACK from R 3.3.0 or later used checking for macOS... not found as on Linux checking for OpenMP... found configure: creating ./config.status config.status: creating inst/include/RcppArmadilloConfigGenerated.h config.status: creating src/Makevars ** libs clang++ -std=gnu++11 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -I/home/travis/R-bin/include -I../inst/include -fopenmp -fpic -g -O2 -c RcppArmadillo.cpp -o RcppArmadillo.o clang++ -std=gnu++11 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -I/home/travis/R-bin/include -I../inst/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -std=gnu++11 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -I/home/travis/R-bin/include -I../inst/include -fopenmp -fpic -g -O2 -c fastLm.cpp -o fastLm.o clang++ -std=gnu++11 -shared -L/home/travis/R-bin/lib/R/lib -L/home/travis/R-bin/lib -o RcppArmadillo.so RcppArmadillo.o RcppExports.o fastLm.o -fopenmp -L/home/travis/R-bin/lib/R/lib -lRlapack -L/home/travis/R-bin/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/travis/R-bin/lib/R/lib -lR installing to /usr/local/lib/R/site-library/RcppArmadillo/libs ** R ** inst ** tests ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Error: package or namespace load failed for ‘RcppArmadillo’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/usr/local/lib/R/site-library/RcppArmadillo/libs/RcppArmadillo.so': libomp.so: cannot open shared object file: No such file or directory Error: loading failed Execution halted ERROR: loading failed * removing ‘/usr/local/lib/R/site-library/RcppArmadillo’ Installation failed: Command failed (1) missing: RcppArmadillo travis_time:end:2a2cafa4:start=1508595661894042445,finish=1508595706969912896,duration=45075870451  The command "Rscript -e 'deps <- devtools::dev_package_deps(dependencies = NA);devtools::install_deps(dependencies = TRUE);if (!all(deps$package %in% installed.packages())) { message("missing: ", paste(setdiff(deps$package, installed.packages()), collapse=", ")); q(status = 1, save = "no")}'" failed and exited with 1 during . Your build has been stopped.