diff --git a/tools/scp/utils.R b/tools/scp/utils.R index 9c40bfed2..3aea0417b 100644 --- a/tools/scp/utils.R +++ b/tools/scp/utils.R @@ -3,7 +3,7 @@ library(scp) library(tidyr) library(tibble) -# Export intermediate results +# Export intermediate results # Function to export a single assay with metadata export_assay_with_metadata <- function(qf, assay_name) { # Extract assay data, row metadata, and col metadata @@ -35,12 +35,12 @@ create_boxplots <- function(scp, i, is_log2, name) { assay_data <- as.data.frame(assay(sce)) %>% rownames_to_column("FeatureID") col_data <- as.data.frame(colData(scp)) %>% - rownames_to_column("SampleID") + rownames_to_column("SampleID") long_data <- assay_data %>% pivot_longer( - cols = -FeatureID, - names_to = "SampleID", - values_to = "Value" + cols = -FeatureID, + names_to = "SampleID", + values_to = "Value" ) long_data <- long_data %>% left_join(col_data, by = "SampleID") @@ -57,7 +57,7 @@ create_boxplots <- function(scp, i, is_log2, name) { x = "Run", y = "Log2 intensity" ) + - theme(axis.text.x = element_text(angle = 45, hjust=1)) + theme(axis.text.x = element_text(angle = 45, hjust = 1)) } # Heatmap