GEO_AD_PD.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "import GEOparse\n",
    "import pandas as pd\n",
    "import numpy as np"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "import pylab as pl\n",
    "import seaborn as sns\n",
    "pl.rcParams['figure.figsize'] = (14, 10)\n",
    "pl.rcParams['ytick.labelsize'] = 12\n",
    "pl.rcParams['xtick.labelsize'] = 11\n",
    "pl.rcParams['axes.labelsize'] = 23\n",
    "pl.rcParams['legend.fontsize'] = 20\n",
    "sns.set_style('ticks')\n",
    "c1, c2, c3, c4 = sns.color_palette(\"Set1\", 4)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:30:19 DEBUG utils - Directory ./ already exists. Skipping.\n",
      "07-Aug-2019 16:30:19 INFO GEOparse - File already exist: using local version.\n",
      "07-Aug-2019 16:30:19 INFO GEOparse - Parsing ./GSE84422_family.soft.gz: \n",
      "07-Aug-2019 16:30:19 DEBUG GEOparse - DATABASE: GeoMiame\n",
      "07-Aug-2019 16:30:19 DEBUG GEOparse - SERIES: GSE84422\n",
      "07-Aug-2019 16:30:19 DEBUG GEOparse - PLATFORM: GPL96\n",
      "07-Aug-2019 16:30:20 DEBUG GEOparse - PLATFORM: GPL97\n",
      "07-Aug-2019 16:30:21 DEBUG GEOparse - PLATFORM: GPL570\n",
      "/home/ranap/anaconda3/envs/BioSandbox/lib/python3.6/site-packages/GEOparse/GEOparse.py:84: DtypeWarning: Columns (2) have mixed types. Specify dtype option on import or set low_memory=False.\n",
      "  return parse_GSE(filepath)\n",
      "07-Aug-2019 16:30:23 DEBUG GEOparse - SAMPLE: GSM2233519\n",
      "07-Aug-2019 16:30:24 DEBUG GEOparse - SAMPLE: GSM2233520\n",
      "07-Aug-2019 16:30:24 DEBUG GEOparse - SAMPLE: GSM2233521\n",
      "07-Aug-2019 16:30:24 DEBUG GEOparse - SAMPLE: GSM2233522\n",
      "07-Aug-2019 16:30:24 DEBUG GEOparse - SAMPLE: GSM2233523\n",
      "07-Aug-2019 16:30:24 DEBUG GEOparse - SAMPLE: GSM2233524\n",
      "07-Aug-2019 16:30:24 DEBUG GEOparse - SAMPLE: GSM2233525\n",
      "07-Aug-2019 16:30:25 DEBUG GEOparse - SAMPLE: GSM2233526\n",
      "07-Aug-2019 16:30:25 DEBUG GEOparse - SAMPLE: GSM2233527\n",
      "07-Aug-2019 16:30:25 DEBUG GEOparse - SAMPLE: GSM2233528\n",
      "07-Aug-2019 16:30:25 DEBUG GEOparse - SAMPLE: GSM2233529\n",
      "07-Aug-2019 16:30:25 DEBUG GEOparse - SAMPLE: GSM2233530\n",
      "07-Aug-2019 16:30:25 DEBUG GEOparse - SAMPLE: GSM2233531\n",
      "07-Aug-2019 16:30:25 DEBUG GEOparse - SAMPLE: GSM2233532\n",
      "07-Aug-2019 16:30:26 DEBUG GEOparse - SAMPLE: GSM2233533\n",
      "07-Aug-2019 16:30:26 DEBUG GEOparse - SAMPLE: GSM2233534\n",
      "07-Aug-2019 16:30:26 DEBUG GEOparse - SAMPLE: GSM2233535\n",
      "07-Aug-2019 16:30:26 DEBUG GEOparse - SAMPLE: GSM2233536\n",
      "07-Aug-2019 16:30:26 DEBUG GEOparse - SAMPLE: GSM2233537\n",
      "07-Aug-2019 16:30:26 DEBUG GEOparse - SAMPLE: GSM2233538\n",
      "07-Aug-2019 16:30:26 DEBUG GEOparse - SAMPLE: GSM2233539\n",
      "07-Aug-2019 16:30:27 DEBUG GEOparse - SAMPLE: GSM2233540\n",
      "07-Aug-2019 16:30:27 DEBUG GEOparse - SAMPLE: GSM2233541\n",
      "07-Aug-2019 16:30:27 DEBUG GEOparse - SAMPLE: GSM2233542\n",
      "07-Aug-2019 16:30:27 DEBUG GEOparse - SAMPLE: GSM2233543\n",
      "07-Aug-2019 16:30:27 DEBUG GEOparse - SAMPLE: GSM2233544\n",
      "07-Aug-2019 16:30:27 DEBUG GEOparse - SAMPLE: GSM2233545\n",
      "07-Aug-2019 16:30:28 DEBUG GEOparse - SAMPLE: GSM2233546\n",
      "07-Aug-2019 16:30:28 DEBUG GEOparse - SAMPLE: GSM2233547\n",
      "07-Aug-2019 16:30:28 DEBUG GEOparse - SAMPLE: GSM2233548\n",
      "07-Aug-2019 16:30:28 DEBUG GEOparse - SAMPLE: GSM2233549\n",
      "07-Aug-2019 16:30:28 DEBUG GEOparse - SAMPLE: GSM2233550\n",
      "07-Aug-2019 16:30:28 DEBUG GEOparse - SAMPLE: GSM2233551\n",
      "07-Aug-2019 16:30:28 DEBUG GEOparse - SAMPLE: GSM2233552\n",
      "07-Aug-2019 16:30:29 DEBUG GEOparse - SAMPLE: GSM2233553\n",
      "07-Aug-2019 16:30:29 DEBUG GEOparse - SAMPLE: GSM2233554\n",
      "07-Aug-2019 16:30:29 DEBUG GEOparse - SAMPLE: GSM2233555\n",
      "07-Aug-2019 16:30:29 DEBUG GEOparse - SAMPLE: GSM2233556\n",
      "07-Aug-2019 16:30:29 DEBUG GEOparse - SAMPLE: GSM2233557\n",
      "07-Aug-2019 16:30:29 DEBUG GEOparse - SAMPLE: GSM2233558\n",
      "07-Aug-2019 16:30:29 DEBUG GEOparse - SAMPLE: GSM2233559\n",
      "07-Aug-2019 16:30:30 DEBUG GEOparse - SAMPLE: GSM2233560\n",
      "07-Aug-2019 16:30:30 DEBUG GEOparse - SAMPLE: GSM2233561\n",
      "07-Aug-2019 16:30:30 DEBUG GEOparse - SAMPLE: GSM2233562\n",
      "07-Aug-2019 16:30:30 DEBUG GEOparse - SAMPLE: GSM2233563\n",
      "07-Aug-2019 16:30:30 DEBUG GEOparse - SAMPLE: GSM2233564\n",
      "07-Aug-2019 16:30:30 DEBUG GEOparse - SAMPLE: GSM2233565\n",
      "07-Aug-2019 16:30:30 DEBUG GEOparse - SAMPLE: GSM2233566\n",
      "07-Aug-2019 16:30:31 DEBUG GEOparse - SAMPLE: GSM2233567\n",
      "07-Aug-2019 16:30:31 DEBUG GEOparse - SAMPLE: GSM2233568\n",
      "07-Aug-2019 16:30:31 DEBUG GEOparse - SAMPLE: GSM2233569\n",
      "07-Aug-2019 16:30:31 DEBUG GEOparse - SAMPLE: GSM2233570\n",
      "07-Aug-2019 16:30:31 DEBUG GEOparse - SAMPLE: GSM2233571\n",
      "07-Aug-2019 16:30:31 DEBUG GEOparse - SAMPLE: GSM2233572\n",
      "07-Aug-2019 16:30:32 DEBUG GEOparse - SAMPLE: GSM2233573\n",
      "07-Aug-2019 16:30:32 DEBUG GEOparse - SAMPLE: GSM2233574\n",
      "07-Aug-2019 16:30:32 DEBUG GEOparse - SAMPLE: GSM2233575\n",
      "07-Aug-2019 16:30:32 DEBUG GEOparse - SAMPLE: GSM2233576\n",
      "07-Aug-2019 16:30:32 DEBUG GEOparse - SAMPLE: GSM2233577\n",
      "07-Aug-2019 16:30:32 DEBUG GEOparse - SAMPLE: GSM2233578\n",
      "07-Aug-2019 16:30:32 DEBUG GEOparse - SAMPLE: GSM2233579\n",
      "07-Aug-2019 16:30:33 DEBUG GEOparse - SAMPLE: GSM2233580\n",
      "07-Aug-2019 16:30:33 DEBUG GEOparse - SAMPLE: GSM2233581\n",
      "07-Aug-2019 16:30:33 DEBUG GEOparse - SAMPLE: GSM2233582\n",
      "07-Aug-2019 16:30:33 DEBUG GEOparse - SAMPLE: GSM2233583\n",
      "07-Aug-2019 16:30:33 DEBUG GEOparse - SAMPLE: GSM2233584\n",
      "07-Aug-2019 16:30:33 DEBUG GEOparse - SAMPLE: GSM2233585\n",
      "07-Aug-2019 16:30:33 DEBUG GEOparse - SAMPLE: GSM2233586\n",
      "07-Aug-2019 16:30:34 DEBUG GEOparse - SAMPLE: GSM2233587\n",
      "07-Aug-2019 16:30:34 DEBUG GEOparse - SAMPLE: GSM2233588\n",
      "07-Aug-2019 16:30:34 DEBUG GEOparse - SAMPLE: GSM2233589\n",
      "07-Aug-2019 16:30:34 DEBUG GEOparse - SAMPLE: GSM2233590\n",
      "07-Aug-2019 16:30:34 DEBUG GEOparse - SAMPLE: GSM2233591\n",
      "07-Aug-2019 16:30:34 DEBUG GEOparse - SAMPLE: GSM2233592\n",
      "07-Aug-2019 16:30:34 DEBUG GEOparse - SAMPLE: GSM2233593\n",
      "07-Aug-2019 16:30:35 DEBUG GEOparse - SAMPLE: GSM2233594\n",
      "07-Aug-2019 16:30:35 DEBUG GEOparse - SAMPLE: GSM2233595\n",
      "07-Aug-2019 16:30:35 DEBUG GEOparse - SAMPLE: GSM2233596\n",
      "07-Aug-2019 16:30:35 DEBUG GEOparse - SAMPLE: GSM2233597\n",
      "07-Aug-2019 16:30:35 DEBUG GEOparse - SAMPLE: GSM2233598\n",
      "07-Aug-2019 16:30:35 DEBUG GEOparse - SAMPLE: GSM2233599\n",
      "07-Aug-2019 16:30:36 DEBUG GEOparse - SAMPLE: GSM2233600\n",
      "07-Aug-2019 16:30:36 DEBUG GEOparse - SAMPLE: GSM2233601\n",
      "07-Aug-2019 16:30:36 DEBUG GEOparse - SAMPLE: GSM2233602\n",
      "07-Aug-2019 16:30:36 DEBUG GEOparse - SAMPLE: GSM2233603\n",
      "07-Aug-2019 16:30:36 DEBUG GEOparse - SAMPLE: GSM2233604\n",
      "07-Aug-2019 16:30:36 DEBUG GEOparse - SAMPLE: GSM2233605\n",
      "07-Aug-2019 16:30:36 DEBUG GEOparse - SAMPLE: GSM2233606\n",
      "07-Aug-2019 16:30:37 DEBUG GEOparse - SAMPLE: GSM2233607\n",
      "07-Aug-2019 16:30:37 DEBUG GEOparse - SAMPLE: GSM2233608\n",
      "07-Aug-2019 16:30:37 DEBUG GEOparse - SAMPLE: GSM2233609\n",
      "07-Aug-2019 16:30:37 DEBUG GEOparse - SAMPLE: GSM2233610\n",
      "07-Aug-2019 16:30:37 DEBUG GEOparse - SAMPLE: GSM2233611\n",
      "07-Aug-2019 16:30:37 DEBUG GEOparse - SAMPLE: GSM2233612\n",
      "07-Aug-2019 16:30:37 DEBUG GEOparse - SAMPLE: GSM2233613\n",
      "07-Aug-2019 16:30:38 DEBUG GEOparse - SAMPLE: GSM2233614\n",
      "07-Aug-2019 16:30:38 DEBUG GEOparse - SAMPLE: GSM2233615\n",
      "07-Aug-2019 16:30:38 DEBUG GEOparse - SAMPLE: GSM2233616\n",
      "07-Aug-2019 16:30:38 DEBUG GEOparse - SAMPLE: GSM2233617\n",
      "07-Aug-2019 16:30:38 DEBUG GEOparse - SAMPLE: GSM2233618\n",
      "07-Aug-2019 16:30:38 DEBUG GEOparse - SAMPLE: GSM2233619\n",
      "07-Aug-2019 16:30:38 DEBUG GEOparse - SAMPLE: GSM2233620\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233621\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233622\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233623\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233624\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233625\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233626\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233627\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233628\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233629\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233630\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233631\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233632\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233633\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233634\n",
      "07-Aug-2019 16:30:39 DEBUG GEOparse - SAMPLE: GSM2233635\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233636\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233637\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233638\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233639\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233640\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233641\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233642\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233643\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233644\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233645\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233646\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233647\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233648\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233649\n",
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233650\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:30:40 DEBUG GEOparse - SAMPLE: GSM2233651\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233652\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233653\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233654\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233655\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233656\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233657\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233658\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233659\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233660\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233661\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233662\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233663\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233664\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233665\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233666\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233667\n",
      "07-Aug-2019 16:30:41 DEBUG GEOparse - SAMPLE: GSM2233668\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233669\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233670\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233671\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233672\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233673\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233674\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233675\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233676\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233677\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233678\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233679\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233680\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233681\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233682\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233683\n",
      "07-Aug-2019 16:30:42 DEBUG GEOparse - SAMPLE: GSM2233684\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233685\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233686\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233687\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233688\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233689\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233690\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233691\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233692\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233693\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233694\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233695\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233696\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233697\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233698\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233699\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233700\n",
      "07-Aug-2019 16:30:43 DEBUG GEOparse - SAMPLE: GSM2233701\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233702\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233703\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233704\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233705\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233706\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233707\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233708\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233709\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233710\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233711\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233712\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233713\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233714\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233715\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233716\n",
      "07-Aug-2019 16:30:44 DEBUG GEOparse - SAMPLE: GSM2233717\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233718\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233719\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233720\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233721\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233722\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233723\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233724\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233725\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233726\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233727\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233728\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233729\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233730\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233731\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233732\n",
      "07-Aug-2019 16:30:45 DEBUG GEOparse - SAMPLE: GSM2233733\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233734\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233735\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233736\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233737\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233738\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233739\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233740\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233741\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233742\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233743\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233744\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233745\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233746\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233747\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233748\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233749\n",
      "07-Aug-2019 16:30:46 DEBUG GEOparse - SAMPLE: GSM2233750\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233751\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233752\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233753\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233754\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233755\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233756\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233757\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233758\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233759\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233760\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233761\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233762\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233763\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233764\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233765\n",
      "07-Aug-2019 16:30:47 DEBUG GEOparse - SAMPLE: GSM2233766\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233767\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233768\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233769\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233770\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233771\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233772\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233773\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233774\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233775\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233776\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233777\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233778\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233779\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233780\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233781\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233782\n",
      "07-Aug-2019 16:30:48 DEBUG GEOparse - SAMPLE: GSM2233783\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233784\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233785\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233786\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233787\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233788\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233789\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233790\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233791\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233792\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233793\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233794\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233795\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233796\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233797\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233798\n",
      "07-Aug-2019 16:30:49 DEBUG GEOparse - SAMPLE: GSM2233799\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233800\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233801\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233802\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233803\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233804\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233805\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233806\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233807\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233808\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233809\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233810\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233811\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233812\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233813\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233814\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233815\n",
      "07-Aug-2019 16:30:50 DEBUG GEOparse - SAMPLE: GSM2233816\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233817\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233818\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233819\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233820\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233821\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233822\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233823\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233824\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233825\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233826\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233827\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233828\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233829\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233830\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233831\n",
      "07-Aug-2019 16:30:51 DEBUG GEOparse - SAMPLE: GSM2233832\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233833\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233834\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233835\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233836\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233837\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233838\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233839\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233840\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233841\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233842\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233843\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233844\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233845\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233846\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233847\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233848\n",
      "07-Aug-2019 16:30:52 DEBUG GEOparse - SAMPLE: GSM2233849\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233850\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233851\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233852\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233853\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233854\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233855\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233856\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233857\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233858\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233859\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233860\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233861\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233862\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233863\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233864\n",
      "07-Aug-2019 16:30:53 DEBUG GEOparse - SAMPLE: GSM2233865\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233866\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233867\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233868\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233869\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233870\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233871\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233872\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233873\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233874\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233875\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233876\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233877\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233878\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233879\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233880\n",
      "07-Aug-2019 16:30:54 DEBUG GEOparse - SAMPLE: GSM2233881\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233882\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233883\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233884\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233885\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233886\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233887\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233888\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233889\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233890\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233891\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233892\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233893\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233894\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233895\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233896\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233897\n",
      "07-Aug-2019 16:30:55 DEBUG GEOparse - SAMPLE: GSM2233898\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233899\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233900\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233901\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233902\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233903\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233904\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233905\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233906\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233907\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233908\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233909\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233910\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233911\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233912\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233913\n",
      "07-Aug-2019 16:30:56 DEBUG GEOparse - SAMPLE: GSM2233914\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233915\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233916\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233917\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233918\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233919\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233920\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233921\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233922\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233923\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233924\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233925\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233926\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233927\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233928\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233929\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233930\n",
      "07-Aug-2019 16:30:57 DEBUG GEOparse - SAMPLE: GSM2233931\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233932\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233933\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233934\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233935\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233936\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233937\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233938\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233939\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233940\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233941\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233942\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233943\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233944\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233945\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233946\n",
      "07-Aug-2019 16:30:58 DEBUG GEOparse - SAMPLE: GSM2233947\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233948\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233949\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233950\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233951\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233952\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233953\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233954\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233955\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233956\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233957\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233958\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233959\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233960\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233961\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233962\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233963\n",
      "07-Aug-2019 16:30:59 DEBUG GEOparse - SAMPLE: GSM2233964\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233965\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233966\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233967\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233968\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233969\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233970\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233971\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233972\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233973\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233974\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233975\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233976\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233977\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233978\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233979\n",
      "07-Aug-2019 16:31:00 DEBUG GEOparse - SAMPLE: GSM2233980\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233981\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233982\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233983\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233984\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233985\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233986\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233987\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233988\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233989\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233990\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233991\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233992\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233993\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233994\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233995\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233996\n",
      "07-Aug-2019 16:31:01 DEBUG GEOparse - SAMPLE: GSM2233997\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2233998\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2233999\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234000\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234001\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234002\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234003\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234004\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234005\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234006\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234007\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234008\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234009\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234010\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234011\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234012\n",
      "07-Aug-2019 16:31:02 DEBUG GEOparse - SAMPLE: GSM2234013\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234014\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234015\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234016\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234017\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234018\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234019\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234020\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234021\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234022\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234023\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234024\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234025\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234026\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234027\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234028\n",
      "07-Aug-2019 16:31:03 DEBUG GEOparse - SAMPLE: GSM2234029\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234030\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234031\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234032\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234033\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234034\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234035\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234036\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234037\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234038\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234039\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234040\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234041\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234042\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234043\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234044\n",
      "07-Aug-2019 16:31:04 DEBUG GEOparse - SAMPLE: GSM2234045\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234046\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234047\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234048\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234049\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234050\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234051\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234052\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234053\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234054\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234055\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234056\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234057\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234058\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234059\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234060\n",
      "07-Aug-2019 16:31:05 DEBUG GEOparse - SAMPLE: GSM2234061\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234062\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234063\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234064\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234065\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234066\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234067\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234068\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234069\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234070\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234071\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234072\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234073\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234074\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234075\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234076\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234077\n",
      "07-Aug-2019 16:31:06 DEBUG GEOparse - SAMPLE: GSM2234078\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234079\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234080\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234081\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234082\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234083\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234084\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234085\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234086\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234087\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234088\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234089\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234090\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234091\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234092\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234093\n",
      "07-Aug-2019 16:31:07 DEBUG GEOparse - SAMPLE: GSM2234094\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234095\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234096\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234097\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234098\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234099\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234100\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234101\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234102\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234103\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234104\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234105\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234106\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234107\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234108\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234109\n",
      "07-Aug-2019 16:31:08 DEBUG GEOparse - SAMPLE: GSM2234110\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234111\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234112\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234113\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234114\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234115\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234116\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234117\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234118\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234119\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234120\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234121\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234122\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234123\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234124\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234125\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234126\n",
      "07-Aug-2019 16:31:09 DEBUG GEOparse - SAMPLE: GSM2234127\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234128\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234129\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234130\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234131\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234132\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234133\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234134\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234135\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234136\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234137\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234138\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234139\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234140\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234141\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234142\n",
      "07-Aug-2019 16:31:10 DEBUG GEOparse - SAMPLE: GSM2234143\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234144\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234145\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234146\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234147\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234148\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234149\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234150\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234151\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234152\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234153\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234154\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234155\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234156\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234157\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234158\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234159\n",
      "07-Aug-2019 16:31:11 DEBUG GEOparse - SAMPLE: GSM2234160\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234161\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234162\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234163\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234164\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234165\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234166\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234167\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234168\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234169\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234170\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234171\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234172\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234173\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234174\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234175\n",
      "07-Aug-2019 16:31:12 DEBUG GEOparse - SAMPLE: GSM2234176\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234177\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234178\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234179\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234180\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234181\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234182\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234183\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234184\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234185\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234186\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234187\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234188\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234189\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234190\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234191\n",
      "07-Aug-2019 16:31:13 DEBUG GEOparse - SAMPLE: GSM2234192\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234193\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234194\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234195\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234196\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234197\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234198\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234199\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234200\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234201\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234202\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234203\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234204\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234205\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234206\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234207\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234208\n",
      "07-Aug-2019 16:31:14 DEBUG GEOparse - SAMPLE: GSM2234209\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234210\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234211\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234212\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234213\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234214\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234215\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234216\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234217\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234218\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234219\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234220\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234221\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234222\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234223\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234224\n",
      "07-Aug-2019 16:31:15 DEBUG GEOparse - SAMPLE: GSM2234225\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234226\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234227\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234228\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234229\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234230\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234231\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234232\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234233\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234234\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234235\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234236\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234237\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234238\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234239\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234240\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234241\n",
      "07-Aug-2019 16:31:16 DEBUG GEOparse - SAMPLE: GSM2234242\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234243\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234244\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234245\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234246\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234247\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234248\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234249\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234250\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234251\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234252\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234253\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234254\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234255\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234256\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234257\n",
      "07-Aug-2019 16:31:17 DEBUG GEOparse - SAMPLE: GSM2234258\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234259\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234260\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234261\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234262\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234263\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234264\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234265\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234266\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234267\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234268\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234269\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234270\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234271\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234272\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234273\n",
      "07-Aug-2019 16:31:18 DEBUG GEOparse - SAMPLE: GSM2234274\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234275\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234276\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234277\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234278\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234279\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234280\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234281\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234282\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234283\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234284\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234285\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234286\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234287\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234288\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234289\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234290\n",
      "07-Aug-2019 16:31:19 DEBUG GEOparse - SAMPLE: GSM2234291\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234292\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234293\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234294\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234295\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234296\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234297\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234298\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234299\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234300\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234301\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234302\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234303\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234304\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234305\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234306\n",
      "07-Aug-2019 16:31:20 DEBUG GEOparse - SAMPLE: GSM2234307\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234308\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234309\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234310\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234311\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234312\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234313\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234314\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234315\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234316\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234317\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234318\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234319\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234320\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234321\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234322\n",
      "07-Aug-2019 16:31:21 DEBUG GEOparse - SAMPLE: GSM2234323\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234324\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234325\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234326\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234327\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234328\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234329\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234330\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234331\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234332\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234333\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234334\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234335\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234336\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234337\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234338\n",
      "07-Aug-2019 16:31:22 DEBUG GEOparse - SAMPLE: GSM2234339\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234340\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234341\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234342\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234343\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234344\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234345\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234346\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234347\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234348\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234349\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234350\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234351\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234352\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234353\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234354\n",
      "07-Aug-2019 16:31:23 DEBUG GEOparse - SAMPLE: GSM2234355\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234356\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234357\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234358\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234359\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234360\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234361\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234362\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234363\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234364\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234365\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234366\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234367\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234368\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234369\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234370\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234371\n",
      "07-Aug-2019 16:31:24 DEBUG GEOparse - SAMPLE: GSM2234372\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234373\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234374\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234375\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234376\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234377\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234378\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234379\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234380\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234381\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234382\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234383\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234384\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234385\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234386\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234387\n",
      "07-Aug-2019 16:31:25 DEBUG GEOparse - SAMPLE: GSM2234388\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234389\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234390\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234391\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234392\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234393\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234394\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234395\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234396\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234397\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234398\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234399\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234400\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234401\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234402\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234403\n",
      "07-Aug-2019 16:31:26 DEBUG GEOparse - SAMPLE: GSM2234404\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234405\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234406\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234407\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234408\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234409\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234410\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234411\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234412\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234413\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234414\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234415\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234416\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234417\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234418\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234419\n",
      "07-Aug-2019 16:31:27 DEBUG GEOparse - SAMPLE: GSM2234420\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234421\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234422\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234423\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234424\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234425\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234426\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234427\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234428\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234429\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234430\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234431\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234432\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234433\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234434\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234435\n",
      "07-Aug-2019 16:31:28 DEBUG GEOparse - SAMPLE: GSM2234436\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234437\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234438\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234439\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234440\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234441\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234442\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234443\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234444\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234445\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234446\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234447\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234448\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234449\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234450\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234451\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234452\n",
      "07-Aug-2019 16:31:29 DEBUG GEOparse - SAMPLE: GSM2234453\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234454\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234455\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234456\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234457\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234458\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234459\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234460\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234461\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234462\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234463\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234464\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234465\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234466\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234467\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234468\n",
      "07-Aug-2019 16:31:30 DEBUG GEOparse - SAMPLE: GSM2234469\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234470\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234471\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234472\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234473\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234474\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234475\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234476\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234477\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234478\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234479\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234480\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234481\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234482\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234483\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234484\n",
      "07-Aug-2019 16:31:31 DEBUG GEOparse - SAMPLE: GSM2234485\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234486\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234487\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234488\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234489\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234490\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234491\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234492\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234493\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234494\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234495\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234496\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234497\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234498\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234499\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234500\n",
      "07-Aug-2019 16:31:32 DEBUG GEOparse - SAMPLE: GSM2234501\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234502\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234503\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234504\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234505\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234506\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234507\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234508\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234509\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234510\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234511\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234512\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234513\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234514\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234515\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234516\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234517\n",
      "07-Aug-2019 16:31:33 DEBUG GEOparse - SAMPLE: GSM2234518\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234519\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234520\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234521\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234522\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234523\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234524\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234525\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234526\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234527\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234528\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234529\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234530\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234531\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234532\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234533\n",
      "07-Aug-2019 16:31:34 DEBUG GEOparse - SAMPLE: GSM2234534\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234535\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234536\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234537\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234538\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234539\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234540\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234541\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234542\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234543\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234544\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234545\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234546\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234547\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234548\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234549\n",
      "07-Aug-2019 16:31:35 DEBUG GEOparse - SAMPLE: GSM2234550\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234551\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234552\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234553\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234554\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234555\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234556\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234557\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234558\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234559\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234560\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234561\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234562\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234563\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234564\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234565\n",
      "07-Aug-2019 16:31:36 DEBUG GEOparse - SAMPLE: GSM2234566\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234567\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234568\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234569\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234570\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234571\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234572\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234573\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234574\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234575\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234576\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234577\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234578\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234579\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234580\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234581\n",
      "07-Aug-2019 16:31:37 DEBUG GEOparse - SAMPLE: GSM2234582\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234583\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234584\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234585\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234586\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234587\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234588\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234589\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234590\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234591\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234592\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234593\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234594\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234595\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234596\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234597\n",
      "07-Aug-2019 16:31:38 DEBUG GEOparse - SAMPLE: GSM2234598\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234599\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234600\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234601\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234602\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234603\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234604\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234605\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234606\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234607\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234608\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234609\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234610\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234611\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234612\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234613\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234614\n",
      "07-Aug-2019 16:31:39 DEBUG GEOparse - SAMPLE: GSM2234615\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234616\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234617\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234618\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234619\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234620\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234621\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234622\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234623\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234624\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234625\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234626\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234627\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234628\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234629\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234630\n",
      "07-Aug-2019 16:31:40 DEBUG GEOparse - SAMPLE: GSM2234631\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234632\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234633\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234634\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234635\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234636\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234637\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234638\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234639\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234640\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234641\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234642\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234643\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234644\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234645\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234646\n",
      "07-Aug-2019 16:31:41 DEBUG GEOparse - SAMPLE: GSM2234647\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234648\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234649\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234650\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234651\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234652\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234653\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234654\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234655\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234656\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234657\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234658\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234659\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234660\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234661\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234662\n",
      "07-Aug-2019 16:31:42 DEBUG GEOparse - SAMPLE: GSM2234663\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234664\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234665\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234666\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234667\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234668\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234669\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234670\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234671\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234672\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234673\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234674\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234675\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234676\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234677\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234678\n",
      "07-Aug-2019 16:31:43 DEBUG GEOparse - SAMPLE: GSM2234679\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234680\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234681\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234682\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234683\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234684\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234685\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234686\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234687\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234688\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234689\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234690\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234691\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234692\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234693\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234694\n",
      "07-Aug-2019 16:31:44 DEBUG GEOparse - SAMPLE: GSM2234695\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234696\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234697\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234698\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234699\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234700\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234701\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234702\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234703\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234704\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234705\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234706\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234707\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234708\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234709\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234710\n",
      "07-Aug-2019 16:31:45 DEBUG GEOparse - SAMPLE: GSM2234711\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234712\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234713\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234714\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234715\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234716\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234717\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234718\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234719\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234720\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234721\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234722\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234723\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234724\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234725\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234726\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234727\n",
      "07-Aug-2019 16:31:46 DEBUG GEOparse - SAMPLE: GSM2234728\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234729\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234730\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234731\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234732\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234733\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234734\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234735\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234736\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234737\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234738\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234739\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234740\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234741\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234742\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234743\n",
      "07-Aug-2019 16:31:47 DEBUG GEOparse - SAMPLE: GSM2234744\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234745\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234746\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234747\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234748\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234749\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234750\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234751\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234752\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234753\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234754\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234755\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234756\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234757\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234758\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234759\n",
      "07-Aug-2019 16:31:48 DEBUG GEOparse - SAMPLE: GSM2234760\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234761\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234762\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234763\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234764\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234765\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234766\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234767\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234768\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234769\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234770\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234771\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234772\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234773\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234774\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234775\n",
      "07-Aug-2019 16:31:49 DEBUG GEOparse - SAMPLE: GSM2234776\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234777\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234778\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234779\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234780\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234781\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234782\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234783\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234784\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234785\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234786\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234787\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234788\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234789\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234790\n",
      "07-Aug-2019 16:31:50 DEBUG GEOparse - SAMPLE: GSM2234791\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234792\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234793\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234794\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234795\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234796\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234797\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234798\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234799\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234800\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234801\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234802\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234803\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234804\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234805\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234806\n",
      "07-Aug-2019 16:31:51 DEBUG GEOparse - SAMPLE: GSM2234807\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234808\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234809\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234810\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234811\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234812\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234813\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234814\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234815\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234816\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234817\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234818\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234819\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234820\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234821\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234822\n",
      "07-Aug-2019 16:31:52 DEBUG GEOparse - SAMPLE: GSM2234823\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234824\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234825\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234826\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234827\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234828\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234829\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234830\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234831\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234832\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234833\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234834\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234835\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234836\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234837\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234838\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234839\n",
      "07-Aug-2019 16:31:53 DEBUG GEOparse - SAMPLE: GSM2234840\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234841\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234842\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234843\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234844\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234845\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234846\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234847\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234848\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234849\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234850\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234851\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234852\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234853\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234854\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234855\n",
      "07-Aug-2019 16:31:54 DEBUG GEOparse - SAMPLE: GSM2234856\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234857\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234858\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234859\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234860\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234861\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234862\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234863\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234864\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234865\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234866\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234867\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234868\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234869\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234870\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234871\n",
      "07-Aug-2019 16:31:55 DEBUG GEOparse - SAMPLE: GSM2234872\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234873\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234874\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234875\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234876\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234877\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234878\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234879\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234880\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234881\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234882\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234883\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234884\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234885\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234886\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234887\n",
      "07-Aug-2019 16:31:56 DEBUG GEOparse - SAMPLE: GSM2234888\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234889\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234890\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234891\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234892\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234893\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234894\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234895\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234896\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234897\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234898\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234899\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234900\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234901\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234902\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234903\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234904\n",
      "07-Aug-2019 16:31:57 DEBUG GEOparse - SAMPLE: GSM2234905\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234906\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234907\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234908\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234909\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234910\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234911\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234912\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234913\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234914\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234915\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234916\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234917\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234918\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234919\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234920\n",
      "07-Aug-2019 16:31:58 DEBUG GEOparse - SAMPLE: GSM2234921\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234922\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234923\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234924\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234925\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234926\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234927\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234928\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234929\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234930\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234931\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234932\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234933\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234934\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234935\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234936\n",
      "07-Aug-2019 16:31:59 DEBUG GEOparse - SAMPLE: GSM2234937\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234938\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234939\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234940\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234941\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234942\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234943\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234944\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234945\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234946\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234947\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234948\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234949\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234950\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234951\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234952\n",
      "07-Aug-2019 16:32:00 DEBUG GEOparse - SAMPLE: GSM2234953\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234954\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234955\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234956\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234957\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234958\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234959\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234960\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234961\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234962\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234963\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234964\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234965\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234966\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234967\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234968\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234969\n",
      "07-Aug-2019 16:32:01 DEBUG GEOparse - SAMPLE: GSM2234970\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234971\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234972\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234973\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234974\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234975\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234976\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234977\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234978\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234979\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234980\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234981\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234982\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234983\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234984\n",
      "07-Aug-2019 16:32:02 DEBUG GEOparse - SAMPLE: GSM2234985\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234986\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234987\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234988\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234989\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234990\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234991\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234992\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234993\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234994\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234995\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234996\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234997\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234998\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2234999\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2235000\n",
      "07-Aug-2019 16:32:03 DEBUG GEOparse - SAMPLE: GSM2235001\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235002\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235003\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235004\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235005\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235006\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235007\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235008\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235009\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235010\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235011\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235012\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235013\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235014\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235015\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235016\n",
      "07-Aug-2019 16:32:04 DEBUG GEOparse - SAMPLE: GSM2235017\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235018\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235019\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235020\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235021\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235022\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235023\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235024\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235025\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235026\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235027\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235028\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235029\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235030\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235031\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235032\n",
      "07-Aug-2019 16:32:05 DEBUG GEOparse - SAMPLE: GSM2235033\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235034\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235035\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235036\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235037\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235038\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235039\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235040\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235041\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235042\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235043\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235044\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235045\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235046\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235047\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235048\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235049\n",
      "07-Aug-2019 16:32:06 DEBUG GEOparse - SAMPLE: GSM2235050\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235051\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235052\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235053\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235054\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235055\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235056\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235057\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235058\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235059\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235060\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235061\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235062\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235063\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235064\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235065\n",
      "07-Aug-2019 16:32:07 DEBUG GEOparse - SAMPLE: GSM2235066\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235067\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235068\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235069\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235070\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235071\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235072\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235073\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235074\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235075\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235076\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235077\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235078\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235079\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235080\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235081\n",
      "07-Aug-2019 16:32:08 DEBUG GEOparse - SAMPLE: GSM2235082\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235083\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235084\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235085\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235086\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235087\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235088\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235089\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235090\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235091\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235092\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235093\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235094\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235095\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235096\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235097\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235098\n",
      "07-Aug-2019 16:32:09 DEBUG GEOparse - SAMPLE: GSM2235099\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235100\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235101\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235102\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235103\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235104\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235105\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235106\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235107\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235108\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235109\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235110\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235111\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235112\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235113\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235114\n",
      "07-Aug-2019 16:32:10 DEBUG GEOparse - SAMPLE: GSM2235115\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235116\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235117\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235118\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235119\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235120\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235121\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235122\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235123\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235124\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235125\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235126\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235127\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235128\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235129\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235130\n",
      "07-Aug-2019 16:32:11 DEBUG GEOparse - SAMPLE: GSM2235131\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235132\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235133\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235134\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235135\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235136\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235137\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235138\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235139\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235140\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235141\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235142\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235143\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235144\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235145\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235146\n",
      "07-Aug-2019 16:32:12 DEBUG GEOparse - SAMPLE: GSM2235147\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235148\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235149\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235150\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235151\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235152\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235153\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235154\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235155\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235156\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235157\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235158\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235159\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235160\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235161\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235162\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235163\n",
      "07-Aug-2019 16:32:13 DEBUG GEOparse - SAMPLE: GSM2235164\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235165\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235166\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235167\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235168\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235169\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235170\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235171\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235172\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235173\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235174\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235175\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235176\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235177\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235178\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235179\n",
      "07-Aug-2019 16:32:14 DEBUG GEOparse - SAMPLE: GSM2235180\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235181\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235182\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235183\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235184\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235185\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235186\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235187\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235188\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235189\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235190\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235191\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235192\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235193\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235194\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235195\n",
      "07-Aug-2019 16:32:15 DEBUG GEOparse - SAMPLE: GSM2235196\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235197\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235198\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235199\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235200\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235201\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235202\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235203\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235204\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235205\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235206\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235207\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235208\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235209\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235210\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235211\n",
      "07-Aug-2019 16:32:16 DEBUG GEOparse - SAMPLE: GSM2235212\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235213\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235214\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235215\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235216\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235217\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235218\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235219\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235220\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235221\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235222\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235223\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235224\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235225\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235226\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235227\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235228\n",
      "07-Aug-2019 16:32:17 DEBUG GEOparse - SAMPLE: GSM2235229\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235230\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235231\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235232\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235233\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235234\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235235\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235236\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235237\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235238\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235239\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235240\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235241\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235242\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235243\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235244\n",
      "07-Aug-2019 16:32:18 DEBUG GEOparse - SAMPLE: GSM2235245\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235246\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235247\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235248\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235249\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235250\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235251\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235252\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235253\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235254\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235255\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235256\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235257\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235258\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235259\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235260\n",
      "07-Aug-2019 16:32:19 DEBUG GEOparse - SAMPLE: GSM2235261\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235262\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235263\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235264\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235265\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235266\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235267\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235268\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235269\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235270\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235271\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235272\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235273\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235274\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235275\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235276\n",
      "07-Aug-2019 16:32:20 DEBUG GEOparse - SAMPLE: GSM2235277\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235278\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235279\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235280\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235281\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235282\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235283\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235284\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235285\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235286\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235287\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235288\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235289\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235290\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235291\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235292\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235293\n",
      "07-Aug-2019 16:32:21 DEBUG GEOparse - SAMPLE: GSM2235294\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235295\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235296\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235297\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235298\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235299\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235300\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235301\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235302\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235303\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235304\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235305\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235306\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235307\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235308\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235309\n",
      "07-Aug-2019 16:32:22 DEBUG GEOparse - SAMPLE: GSM2235310\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235311\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235312\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235313\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235314\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235315\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235316\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235317\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235318\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235319\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235320\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235321\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235322\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235323\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235324\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235325\n",
      "07-Aug-2019 16:32:23 DEBUG GEOparse - SAMPLE: GSM2235326\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235327\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235328\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235329\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235330\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235331\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235332\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235333\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235334\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235335\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235336\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235337\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235338\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235339\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235340\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235341\n",
      "07-Aug-2019 16:32:24 DEBUG GEOparse - SAMPLE: GSM2235342\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235343\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235344\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235345\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235346\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235347\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235348\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235349\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235350\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235351\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235352\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235353\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235354\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235355\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235356\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235357\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235358\n",
      "07-Aug-2019 16:32:25 DEBUG GEOparse - SAMPLE: GSM2235359\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235360\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235361\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235362\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235363\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235364\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235365\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235366\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235367\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235368\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235369\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235370\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235371\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235372\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235373\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235374\n",
      "07-Aug-2019 16:32:26 DEBUG GEOparse - SAMPLE: GSM2235375\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235376\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235377\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235378\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235379\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235380\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235381\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235382\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235383\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235384\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235385\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235386\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235387\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235388\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235389\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235390\n",
      "07-Aug-2019 16:32:27 DEBUG GEOparse - SAMPLE: GSM2235391\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235392\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235393\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235394\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235395\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235396\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235397\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235398\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235399\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235400\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235401\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235402\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235403\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235404\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235405\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235406\n",
      "07-Aug-2019 16:32:28 DEBUG GEOparse - SAMPLE: GSM2235407\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235408\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235409\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235410\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235411\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235412\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235413\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235414\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235415\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235416\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235417\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235418\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235419\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235420\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235421\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235422\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235423\n",
      "07-Aug-2019 16:32:29 DEBUG GEOparse - SAMPLE: GSM2235424\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235425\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235426\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235427\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235428\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235429\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235430\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235431\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235432\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235433\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235434\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235435\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235436\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235437\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235438\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235439\n",
      "07-Aug-2019 16:32:30 DEBUG GEOparse - SAMPLE: GSM2235440\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235441\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235442\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235443\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235444\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235445\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235446\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235447\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235448\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235449\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235450\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235451\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235452\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235453\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235454\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235455\n",
      "07-Aug-2019 16:32:31 DEBUG GEOparse - SAMPLE: GSM2235456\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235457\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235458\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235459\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235460\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235461\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235462\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235463\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235464\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235465\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235466\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235467\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235468\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235469\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235470\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235471\n",
      "07-Aug-2019 16:32:32 DEBUG GEOparse - SAMPLE: GSM2235472\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235473\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235474\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235475\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235476\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235477\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235478\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235479\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235480\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235481\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235482\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235483\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235484\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235485\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235486\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235487\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235488\n",
      "07-Aug-2019 16:32:33 DEBUG GEOparse - SAMPLE: GSM2235489\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235490\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235491\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235492\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235493\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235494\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235495\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235496\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235497\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235498\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235499\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235500\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235501\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235502\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235503\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235504\n",
      "07-Aug-2019 16:32:34 DEBUG GEOparse - SAMPLE: GSM2235505\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235506\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235507\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235508\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235509\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235510\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235511\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235512\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235513\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235514\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235515\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235516\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235517\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235518\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235519\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235520\n",
      "07-Aug-2019 16:32:35 DEBUG GEOparse - SAMPLE: GSM2235521\n",
      "07-Aug-2019 16:32:36 DEBUG GEOparse - SAMPLE: GSM2235522\n"
     ]
    }
   ],
   "source": [
    "gse = GEOparse.get_GEO(\"GSE84422\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "[\"Molecular Signatures Underlying Selective Regional Vulnerability to Alzheimer's Disease\"]"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "gse.metadata['title']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "[\"Alzheimer's disease (AD) is the most common form of dementia, characterized by progressive cognitive impairment and neurodegeneration as a result of abnormal neuronal loss. To elucidate the molecular systems associated with AD, we characterized the gene expression changes associated with multiple clinical and neuropathological traits in 1,053 postmortem brain samples across 19 brain regions from 125 persons dying with varying severities of dementia and variable AD-neuropathology severities.\"]"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "gse.metadata['summary']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['GSM2233519',\n",
       " 'GSM2233520',\n",
       " 'GSM2233521',\n",
       " 'GSM2233522',\n",
       " 'GSM2233523',\n",
       " 'GSM2233524',\n",
       " 'GSM2233525',\n",
       " 'GSM2233526',\n",
       " 'GSM2233527',\n",
       " 'GSM2233528',\n",
       " 'GSM2233529',\n",
       " 'GSM2233530',\n",
       " 'GSM2233531',\n",
       " 'GSM2233532',\n",
       " 'GSM2233533',\n",
       " 'GSM2233534',\n",
       " 'GSM2233535',\n",
       " 'GSM2233536',\n",
       " 'GSM2233537',\n",
       " 'GSM2233538',\n",
       " 'GSM2233539',\n",
       " 'GSM2233540',\n",
       " 'GSM2233541',\n",
       " 'GSM2233542',\n",
       " 'GSM2233543',\n",
       " 'GSM2233544',\n",
       " 'GSM2233545',\n",
       " 'GSM2233546',\n",
       " 'GSM2233547',\n",
       " 'GSM2233548',\n",
       " 'GSM2233549',\n",
       " 'GSM2233550',\n",
       " 'GSM2233551',\n",
       " 'GSM2233552',\n",
       " 'GSM2233553',\n",
       " 'GSM2233554',\n",
       " 'GSM2233555',\n",
       " 'GSM2233556',\n",
       " 'GSM2233557',\n",
       " 'GSM2233558',\n",
       " 'GSM2233559',\n",
       " 'GSM2233560',\n",
       " 'GSM2233561',\n",
       " 'GSM2233562',\n",
       " 'GSM2233563',\n",
       " 'GSM2233564',\n",
       " 'GSM2233565',\n",
       " 'GSM2233566',\n",
       " 'GSM2233567',\n",
       " 'GSM2233568',\n",
       " 'GSM2233569',\n",
       " 'GSM2233570',\n",
       " 'GSM2233571',\n",
       " 'GSM2233572',\n",
       " 'GSM2233573',\n",
       " 'GSM2233574',\n",
       " 'GSM2233575',\n",
       " 'GSM2233576',\n",
       " 'GSM2233577',\n",
       " 'GSM2233578',\n",
       " 'GSM2233579',\n",
       " 'GSM2233580',\n",
       " 'GSM2233581',\n",
       " 'GSM2233582',\n",
       " 'GSM2233583',\n",
       " 'GSM2233584',\n",
       " 'GSM2233585',\n",
       " 'GSM2233586',\n",
       " 'GSM2233587',\n",
       " 'GSM2233588',\n",
       " 'GSM2233589',\n",
       " 'GSM2233590',\n",
       " 'GSM2233591',\n",
       " 'GSM2233592',\n",
       " 'GSM2233593',\n",
       " 'GSM2233594',\n",
       " 'GSM2233595',\n",
       " 'GSM2233596',\n",
       " 'GSM2233597',\n",
       " 'GSM2233598',\n",
       " 'GSM2233599',\n",
       " 'GSM2233600',\n",
       " 'GSM2233601',\n",
       " 'GSM2233602',\n",
       " 'GSM2233603',\n",
       " 'GSM2233604',\n",
       " 'GSM2233605',\n",
       " 'GSM2233606',\n",
       " 'GSM2233607',\n",
       " 'GSM2233608',\n",
       " 'GSM2233609',\n",
       " 'GSM2233610',\n",
       " 'GSM2233611',\n",
       " 'GSM2233612',\n",
       " 'GSM2233613',\n",
       " 'GSM2233614',\n",
       " 'GSM2233615',\n",
       " 'GSM2233616',\n",
       " 'GSM2233617',\n",
       " 'GSM2233618',\n",
       " 'GSM2233619',\n",
       " 'GSM2233620',\n",
       " 'GSM2233621',\n",
       " 'GSM2233622',\n",
       " 'GSM2233623',\n",
       " 'GSM2233624',\n",
       " 'GSM2233625',\n",
       " 'GSM2233626',\n",
       " 'GSM2233627',\n",
       " 'GSM2233628',\n",
       " 'GSM2233629',\n",
       " 'GSM2233630',\n",
       " 'GSM2233631',\n",
       " 'GSM2233632',\n",
       " 'GSM2233633',\n",
       " 'GSM2233634',\n",
       " 'GSM2233635',\n",
       " 'GSM2233636',\n",
       " 'GSM2233637',\n",
       " 'GSM2233638',\n",
       " 'GSM2233639',\n",
       " 'GSM2233640',\n",
       " 'GSM2233641',\n",
       " 'GSM2233642',\n",
       " 'GSM2233643',\n",
       " 'GSM2233644',\n",
       " 'GSM2233645',\n",
       " 'GSM2233646',\n",
       " 'GSM2233647',\n",
       " 'GSM2233648',\n",
       " 'GSM2233649',\n",
       " 'GSM2233650',\n",
       " 'GSM2233651',\n",
       " 'GSM2233652',\n",
       " 'GSM2233653',\n",
       " 'GSM2233654',\n",
       " 'GSM2233655',\n",
       " 'GSM2233656',\n",
       " 'GSM2233657',\n",
       " 'GSM2233658',\n",
       " 'GSM2233659',\n",
       " 'GSM2233660',\n",
       " 'GSM2233661',\n",
       " 'GSM2233662',\n",
       " 'GSM2233663',\n",
       " 'GSM2233664',\n",
       " 'GSM2233665',\n",
       " 'GSM2233666',\n",
       " 'GSM2233667',\n",
       " 'GSM2233668',\n",
       " 'GSM2233669',\n",
       " 'GSM2233670',\n",
       " 'GSM2233671',\n",
       " 'GSM2233672',\n",
       " 'GSM2233673',\n",
       " 'GSM2233674',\n",
       " 'GSM2233675',\n",
       " 'GSM2233676',\n",
       " 'GSM2233677',\n",
       " 'GSM2233678',\n",
       " 'GSM2233679',\n",
       " 'GSM2233680',\n",
       " 'GSM2233681',\n",
       " 'GSM2233682',\n",
       " 'GSM2233683',\n",
       " 'GSM2233684',\n",
       " 'GSM2233685',\n",
       " 'GSM2233686',\n",
       " 'GSM2233687',\n",
       " 'GSM2233688',\n",
       " 'GSM2233689',\n",
       " 'GSM2233690',\n",
       " 'GSM2233691',\n",
       " 'GSM2233692',\n",
       " 'GSM2233693',\n",
       " 'GSM2233694',\n",
       " 'GSM2233695',\n",
       " 'GSM2233696',\n",
       " 'GSM2233697',\n",
       " 'GSM2233698',\n",
       " 'GSM2233699',\n",
       " 'GSM2233700',\n",
       " 'GSM2233701',\n",
       " 'GSM2233702',\n",
       " 'GSM2233703',\n",
       " 'GSM2233704',\n",
       " 'GSM2233705',\n",
       " 'GSM2233706',\n",
       " 'GSM2233707',\n",
       " 'GSM2233708',\n",
       " 'GSM2233709',\n",
       " 'GSM2233710',\n",
       " 'GSM2233711',\n",
       " 'GSM2233712',\n",
       " 'GSM2233713',\n",
       " 'GSM2233714',\n",
       " 'GSM2233715',\n",
       " 'GSM2233716',\n",
       " 'GSM2233717',\n",
       " 'GSM2233718',\n",
       " 'GSM2233719',\n",
       " 'GSM2233720',\n",
       " 'GSM2233721',\n",
       " 'GSM2233722',\n",
       " 'GSM2233723',\n",
       " 'GSM2233724',\n",
       " 'GSM2233725',\n",
       " 'GSM2233726',\n",
       " 'GSM2233727',\n",
       " 'GSM2233728',\n",
       " 'GSM2233729',\n",
       " 'GSM2233730',\n",
       " 'GSM2233731',\n",
       " 'GSM2233732',\n",
       " 'GSM2233733',\n",
       " 'GSM2233734',\n",
       " 'GSM2233735',\n",
       " 'GSM2233736',\n",
       " 'GSM2233737',\n",
       " 'GSM2233738',\n",
       " 'GSM2233739',\n",
       " 'GSM2233740',\n",
       " 'GSM2233741',\n",
       " 'GSM2233742',\n",
       " 'GSM2233743',\n",
       " 'GSM2233744',\n",
       " 'GSM2233745',\n",
       " 'GSM2233746',\n",
       " 'GSM2233747',\n",
       " 'GSM2233748',\n",
       " 'GSM2233749',\n",
       " 'GSM2233750',\n",
       " 'GSM2233751',\n",
       " 'GSM2233752',\n",
       " 'GSM2233753',\n",
       " 'GSM2233754',\n",
       " 'GSM2233755',\n",
       " 'GSM2233756',\n",
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       " 'GSM2234387',\n",
       " 'GSM2234388',\n",
       " 'GSM2234389',\n",
       " 'GSM2234390',\n",
       " 'GSM2234391',\n",
       " 'GSM2234392',\n",
       " 'GSM2234393',\n",
       " 'GSM2234394',\n",
       " 'GSM2234395',\n",
       " 'GSM2234396',\n",
       " 'GSM2234397',\n",
       " 'GSM2234398',\n",
       " 'GSM2234399',\n",
       " 'GSM2234400',\n",
       " 'GSM2234401',\n",
       " 'GSM2234402',\n",
       " 'GSM2234403',\n",
       " 'GSM2234404',\n",
       " 'GSM2234405',\n",
       " 'GSM2234406',\n",
       " 'GSM2234407',\n",
       " 'GSM2234408',\n",
       " 'GSM2234409',\n",
       " 'GSM2234410',\n",
       " 'GSM2234411',\n",
       " 'GSM2234412',\n",
       " 'GSM2234413',\n",
       " 'GSM2234414',\n",
       " 'GSM2234415',\n",
       " 'GSM2234416',\n",
       " 'GSM2234417',\n",
       " 'GSM2234418',\n",
       " 'GSM2234419',\n",
       " 'GSM2234420',\n",
       " 'GSM2234421',\n",
       " 'GSM2234422',\n",
       " 'GSM2234423',\n",
       " 'GSM2234424',\n",
       " 'GSM2234425',\n",
       " 'GSM2234426',\n",
       " 'GSM2234427',\n",
       " 'GSM2234428',\n",
       " 'GSM2234429',\n",
       " 'GSM2234430',\n",
       " 'GSM2234431',\n",
       " 'GSM2234432',\n",
       " 'GSM2234433',\n",
       " 'GSM2234434',\n",
       " 'GSM2234435',\n",
       " 'GSM2234436',\n",
       " 'GSM2234437',\n",
       " 'GSM2234438',\n",
       " 'GSM2234439',\n",
       " 'GSM2234440',\n",
       " 'GSM2234441',\n",
       " 'GSM2234442',\n",
       " 'GSM2234443',\n",
       " 'GSM2234444',\n",
       " 'GSM2234445',\n",
       " 'GSM2234446',\n",
       " 'GSM2234447',\n",
       " 'GSM2234448',\n",
       " 'GSM2234449',\n",
       " 'GSM2234450',\n",
       " 'GSM2234451',\n",
       " 'GSM2234452',\n",
       " 'GSM2234453',\n",
       " 'GSM2234454',\n",
       " 'GSM2234455',\n",
       " 'GSM2234456',\n",
       " 'GSM2234457',\n",
       " 'GSM2234458',\n",
       " 'GSM2234459',\n",
       " 'GSM2234460',\n",
       " 'GSM2234461',\n",
       " 'GSM2234462',\n",
       " 'GSM2234463',\n",
       " 'GSM2234464',\n",
       " 'GSM2234465',\n",
       " 'GSM2234466',\n",
       " 'GSM2234467',\n",
       " 'GSM2234468',\n",
       " 'GSM2234469',\n",
       " 'GSM2234470',\n",
       " 'GSM2234471',\n",
       " 'GSM2234472',\n",
       " 'GSM2234473',\n",
       " 'GSM2234474',\n",
       " 'GSM2234475',\n",
       " 'GSM2234476',\n",
       " 'GSM2234477',\n",
       " 'GSM2234478',\n",
       " 'GSM2234479',\n",
       " 'GSM2234480',\n",
       " 'GSM2234481',\n",
       " 'GSM2234482',\n",
       " 'GSM2234483',\n",
       " 'GSM2234484',\n",
       " 'GSM2234485',\n",
       " 'GSM2234486',\n",
       " 'GSM2234487',\n",
       " 'GSM2234488',\n",
       " 'GSM2234489',\n",
       " 'GSM2234490',\n",
       " 'GSM2234491',\n",
       " 'GSM2234492',\n",
       " 'GSM2234493',\n",
       " 'GSM2234494',\n",
       " 'GSM2234495',\n",
       " 'GSM2234496',\n",
       " 'GSM2234497',\n",
       " 'GSM2234498',\n",
       " 'GSM2234499',\n",
       " 'GSM2234500',\n",
       " 'GSM2234501',\n",
       " 'GSM2234502',\n",
       " 'GSM2234503',\n",
       " 'GSM2234504',\n",
       " 'GSM2234505',\n",
       " 'GSM2234506',\n",
       " 'GSM2234507',\n",
       " 'GSM2234508',\n",
       " 'GSM2234509',\n",
       " 'GSM2234510',\n",
       " 'GSM2234511',\n",
       " 'GSM2234512',\n",
       " 'GSM2234513',\n",
       " 'GSM2234514',\n",
       " 'GSM2234515',\n",
       " 'GSM2234516',\n",
       " 'GSM2234517',\n",
       " 'GSM2234518',\n",
       " ...]"
      ]
     },
     "execution_count": 6,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "gse.metadata['sample_id']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Name:  GSM2233519\n",
      "Metadata:\n",
      " - title : Subject 495, region Amygdala\n",
      " - geo_accession : GSM2233519\n",
      " - status : Public on Aug 19 2016\n",
      " - submission_date : Jul 14 2016\n",
      " - last_update_date : Aug 20 2016\n",
      " - type : RNA\n",
      " - channel_count : 1\n",
      " - source_name_ch1 : Amygdala, 69 yr old male\n",
      " - organism_ch1 : Homo sapiens\n",
      " - taxid_ch1 : 9606\n",
      " - characteristics_ch1 : subject id: 495, age: 69, Sex: male, race: black, postmortem interval minutes: 255, ph: 6.3, clinical dementia rating: 0.5, braak neurofibrillary tangle score: 1, neuropathological category: Normal, average neuritic plaque density: 0, sum of cerad rating scores in multiple brain regions: 0, sum of neurofibrillary tangles density in multiple brain regions: 1, brain region: Amygdala, tissue: post-mortem brain\n",
      " - treatment_protocol_ch1 : N/A\n",
      " - growth_protocol_ch1 : N/A\n",
      " - molecule_ch1 : total RNA\n",
      " - extract_protocol_ch1 : Total RNA was isolated from 50 mg tissue aliquots from brain tissue samples, amplified to cRNA, and biotin-labeled for analysis on the Affymetrix U133AB or U133 Plus 2.0 Human genome GeneChip at Gene Logic Inc. (Gaithersburg, MD, USA) using the TRIzol method and RNeasy columns according to protocols from Affymetrix (Santa Clara, CA, USA). The 28S/18S rRNA ratio of isolated RNA was assessed using a Bioanalyzer (Agilent Technologies, Palo Alto, CA, USA) Label – biotin label protocol => followed a protocol described in the Gene Logic GeneChip® Analysis Manual (Gaithersburg, USA).\n",
      " - label_ch1 : biotin\n",
      " - label_protocol_ch1 : followed a protocol described in the Gene Logic GeneChip® Analysis Manual (Gaithersburg, USA).\n",
      " - hyb_protocol : followed a protocol described in the Gene Logic GeneChip® Analysis Manual (Gaithersburg, USA).\n",
      " - scan_protocol : followed a protocol described in the Gene Logic GeneChip® Analysis Manual (Gaithersburg, USA).\n",
      " - data_processing : The raw microarray data was preprocessed using the robust multiarray Average (RMA) method function implemented in the R/Bioconductor package Affy (v1.44) using the default parameters, including quantile normalizion and log2 transformation. RMA normalization was performed separately for each brain region. For 17 brain regions profiled with both 133A and 133B arrays, 133A and 133B arrays were normalized separately and combined afterwards. Finally, the normalized gene expression data was corrected for covariates including sex, PMI (postmortem interval), pH and race using linear regression.\n",
      " - platform_id : GPL570\n",
      " - contact_name : Minghui,,Wang\n",
      " - contact_department : Genetics and Genomic Sciences\n",
      " - contact_institute : Icahn School of Medicine at Mount Sinai\n",
      " - contact_address : 1470 Madison Avenue\n",
      " - contact_city : New York\n",
      " - contact_state : NY\n",
      " - contact_zip/postal_code : 10029\n",
      " - contact_country : USA\n",
      " - supplementary_file : ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2233nnn/GSM2233519/suppl/GSM2233519_113162hp133a11.CEL.gz\n",
      " - series_id : GSE84422\n",
      " - data_row_count : 54613\n",
      "Table data:\n",
      "      ID_REF     VALUE\n",
      "0  1007_s_at  8.574104\n",
      "1    1053_at  4.770704\n",
      "2     117_at  2.722635\n",
      "3     121_at  2.708397\n",
      "4  1255_g_at  2.343187\n"
     ]
    }
   ],
   "source": [
    "for gsm_name, gsm in gse.gsms.items():\n",
    "    print(\"Name: \", gsm_name)\n",
    "    print(\"Metadata:\",)\n",
    "    for key, value in gsm.metadata.items():\n",
    "        print(\" - %s : %s\" % (key, \", \".join(value)))\n",
    "    print (\"Table data:\",)\n",
    "    print (gsm.table.head())\n",
    "    break"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "pivoted_samples = gse.pivot_samples('VALUE')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "\n",
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       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th>name</th>\n",
       "      <th>GSM2233519</th>\n",
       "      <th>GSM2233520</th>\n",
       "      <th>GSM2233521</th>\n",
       "      <th>GSM2233522</th>\n",
       "      <th>GSM2233523</th>\n",
       "      <th>GSM2233524</th>\n",
       "      <th>GSM2233525</th>\n",
       "      <th>GSM2233526</th>\n",
       "      <th>GSM2233527</th>\n",
       "      <th>GSM2233528</th>\n",
       "      <th>...</th>\n",
       "      <th>GSM2235513</th>\n",
       "      <th>GSM2235514</th>\n",
       "      <th>GSM2235515</th>\n",
       "      <th>GSM2235516</th>\n",
       "      <th>GSM2235517</th>\n",
       "      <th>GSM2235518</th>\n",
       "      <th>GSM2235519</th>\n",
       "      <th>GSM2235520</th>\n",
       "      <th>GSM2235521</th>\n",
       "      <th>GSM2235522</th>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>ID_REF</th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
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       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>1007_s_at</th>\n",
       "      <td>8.574104</td>\n",
       "      <td>8.991247</td>\n",
       "      <td>9.195859</td>\n",
       "      <td>9.362672</td>\n",
       "      <td>8.923102</td>\n",
       "      <td>9.382466</td>\n",
       "      <td>9.292576</td>\n",
       "      <td>9.122197</td>\n",
       "      <td>9.068594</td>\n",
       "      <td>9.066957</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1053_at</th>\n",
       "      <td>4.770704</td>\n",
       "      <td>4.915865</td>\n",
       "      <td>5.436243</td>\n",
       "      <td>4.896158</td>\n",
       "      <td>4.842856</td>\n",
       "      <td>5.217553</td>\n",
       "      <td>4.761193</td>\n",
       "      <td>4.915572</td>\n",
       "      <td>4.420729</td>\n",
       "      <td>5.253055</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
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       "      <th>117_at</th>\n",
       "      <td>2.722635</td>\n",
       "      <td>2.677848</td>\n",
       "      <td>2.619575</td>\n",
       "      <td>2.787066</td>\n",
       "      <td>2.750039</td>\n",
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       "      <td>2.342134</td>\n",
       "      <td>2.678053</td>\n",
       "      <td>2.444795</td>\n",
       "      <td>3.236246</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
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       "      <td>2.708397</td>\n",
       "      <td>2.869098</td>\n",
       "      <td>2.843030</td>\n",
       "      <td>2.950779</td>\n",
       "      <td>3.205170</td>\n",
       "      <td>3.113110</td>\n",
       "      <td>2.913583</td>\n",
       "      <td>2.966424</td>\n",
       "      <td>2.798382</td>\n",
       "      <td>2.941285</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1255_g_at</th>\n",
       "      <td>2.343187</td>\n",
       "      <td>3.312817</td>\n",
       "      <td>2.299937</td>\n",
       "      <td>2.920171</td>\n",
       "      <td>2.783208</td>\n",
       "      <td>2.800850</td>\n",
       "      <td>2.851128</td>\n",
       "      <td>2.812243</td>\n",
       "      <td>3.258507</td>\n",
       "      <td>2.553696</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>5 rows × 2004 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "name       GSM2233519  GSM2233520  GSM2233521  GSM2233522  GSM2233523  \\\n",
       "ID_REF                                                                  \n",
       "1007_s_at    8.574104    8.991247    9.195859    9.362672    8.923102   \n",
       "1053_at      4.770704    4.915865    5.436243    4.896158    4.842856   \n",
       "117_at       2.722635    2.677848    2.619575    2.787066    2.750039   \n",
       "121_at       2.708397    2.869098    2.843030    2.950779    3.205170   \n",
       "1255_g_at    2.343187    3.312817    2.299937    2.920171    2.783208   \n",
       "\n",
       "name       GSM2233524  GSM2233525  GSM2233526  GSM2233527  GSM2233528  \\\n",
       "ID_REF                                                                  \n",
       "1007_s_at    9.382466    9.292576    9.122197    9.068594    9.066957   \n",
       "1053_at      5.217553    4.761193    4.915572    4.420729    5.253055   \n",
       "117_at       2.873187    2.342134    2.678053    2.444795    3.236246   \n",
       "121_at       3.113110    2.913583    2.966424    2.798382    2.941285   \n",
       "1255_g_at    2.800850    2.851128    2.812243    3.258507    2.553696   \n",
       "\n",
       "name          ...      GSM2235513  GSM2235514  GSM2235515  GSM2235516  \\\n",
       "ID_REF        ...                                                       \n",
       "1007_s_at     ...             NaN         NaN         NaN         NaN   \n",
       "1053_at       ...             NaN         NaN         NaN         NaN   \n",
       "117_at        ...             NaN         NaN         NaN         NaN   \n",
       "121_at        ...             NaN         NaN         NaN         NaN   \n",
       "1255_g_at     ...             NaN         NaN         NaN         NaN   \n",
       "\n",
       "name       GSM2235517  GSM2235518  GSM2235519  GSM2235520  GSM2235521  \\\n",
       "ID_REF                                                                  \n",
       "1007_s_at         NaN         NaN         NaN         NaN         NaN   \n",
       "1053_at           NaN         NaN         NaN         NaN         NaN   \n",
       "117_at            NaN         NaN         NaN         NaN         NaN   \n",
       "121_at            NaN         NaN         NaN         NaN         NaN   \n",
       "1255_g_at         NaN         NaN         NaN         NaN         NaN   \n",
       "\n",
       "name       GSM2235522  \n",
       "ID_REF                 \n",
       "1007_s_at         NaN  \n",
       "1053_at           NaN  \n",
       "117_at            NaN  \n",
       "121_at            NaN  \n",
       "1255_g_at         NaN  \n",
       "\n",
       "[5 rows x 2004 columns]"
      ]
     },
     "execution_count": 9,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "pivoted_samples.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Number of probes before filtering:  54681\n"
     ]
    }
   ],
   "source": [
    "pivoted_samples_average = pivoted_samples.median(axis=1)\n",
    "print(\"Number of probes before filtering: \", len(pivoted_samples_average))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "expression_threshold = pivoted_samples_average.quantile(0.25)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Number of probes above threshold:  41011\n"
     ]
    }
   ],
   "source": [
    "expressed_probes = pivoted_samples_average[pivoted_samples_average >= expression_threshold].index.tolist()\n",
    "print(\"Number of probes above threshold: \", len(expressed_probes))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/ranap/anaconda3/envs/BioSandbox/lib/python3.6/site-packages/ipykernel_launcher.py:1: DeprecationWarning: \n",
      ".ix is deprecated. Please use\n",
      ".loc for label based indexing or\n",
      ".iloc for positional indexing\n",
      "\n",
      "See the documentation here:\n",
      "http://pandas.pydata.org/pandas-docs/stable/indexing.html#ix-indexer-is-deprecated\n",
      "  \"\"\"Entry point for launching an IPython kernel.\n"
     ]
    }
   ],
   "source": [
    "samples = gse.pivot_samples(\"VALUE\").ix[expressed_probes]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "      <th>GSM2233519</th>\n",
       "      <th>GSM2233520</th>\n",
       "      <th>GSM2233521</th>\n",
       "      <th>GSM2233522</th>\n",
       "      <th>GSM2233523</th>\n",
       "      <th>GSM2233524</th>\n",
       "      <th>GSM2233525</th>\n",
       "      <th>GSM2233526</th>\n",
       "      <th>GSM2233527</th>\n",
       "      <th>GSM2233528</th>\n",
       "      <th>...</th>\n",
       "      <th>GSM2235513</th>\n",
       "      <th>GSM2235514</th>\n",
       "      <th>GSM2235515</th>\n",
       "      <th>GSM2235516</th>\n",
       "      <th>GSM2235517</th>\n",
       "      <th>GSM2235518</th>\n",
       "      <th>GSM2235519</th>\n",
       "      <th>GSM2235520</th>\n",
       "      <th>GSM2235521</th>\n",
       "      <th>GSM2235522</th>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>ID_REF</th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>1007_s_at</th>\n",
       "      <td>8.574104</td>\n",
       "      <td>8.991247</td>\n",
       "      <td>9.195859</td>\n",
       "      <td>9.362672</td>\n",
       "      <td>8.923102</td>\n",
       "      <td>9.382466</td>\n",
       "      <td>9.292576</td>\n",
       "      <td>9.122197</td>\n",
       "      <td>9.068594</td>\n",
       "      <td>9.066957</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1053_at</th>\n",
       "      <td>4.770704</td>\n",
       "      <td>4.915865</td>\n",
       "      <td>5.436243</td>\n",
       "      <td>4.896158</td>\n",
       "      <td>4.842856</td>\n",
       "      <td>5.217553</td>\n",
       "      <td>4.761193</td>\n",
       "      <td>4.915572</td>\n",
       "      <td>4.420729</td>\n",
       "      <td>5.253055</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>117_at</th>\n",
       "      <td>2.722635</td>\n",
       "      <td>2.677848</td>\n",
       "      <td>2.619575</td>\n",
       "      <td>2.787066</td>\n",
       "      <td>2.750039</td>\n",
       "      <td>2.873187</td>\n",
       "      <td>2.342134</td>\n",
       "      <td>2.678053</td>\n",
       "      <td>2.444795</td>\n",
       "      <td>3.236246</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>121_at</th>\n",
       "      <td>2.708397</td>\n",
       "      <td>2.869098</td>\n",
       "      <td>2.843030</td>\n",
       "      <td>2.950779</td>\n",
       "      <td>3.205170</td>\n",
       "      <td>3.113110</td>\n",
       "      <td>2.913583</td>\n",
       "      <td>2.966424</td>\n",
       "      <td>2.798382</td>\n",
       "      <td>2.941285</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1294_at</th>\n",
       "      <td>2.508205</td>\n",
       "      <td>2.133941</td>\n",
       "      <td>2.404052</td>\n",
       "      <td>2.541948</td>\n",
       "      <td>4.049023</td>\n",
       "      <td>2.443089</td>\n",
       "      <td>2.478089</td>\n",
       "      <td>2.504275</td>\n",
       "      <td>2.556177</td>\n",
       "      <td>2.320297</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>5 rows × 2004 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "name       GSM2233519  GSM2233520  GSM2233521  GSM2233522  GSM2233523  \\\n",
       "ID_REF                                                                  \n",
       "1007_s_at    8.574104    8.991247    9.195859    9.362672    8.923102   \n",
       "1053_at      4.770704    4.915865    5.436243    4.896158    4.842856   \n",
       "117_at       2.722635    2.677848    2.619575    2.787066    2.750039   \n",
       "121_at       2.708397    2.869098    2.843030    2.950779    3.205170   \n",
       "1294_at      2.508205    2.133941    2.404052    2.541948    4.049023   \n",
       "\n",
       "name       GSM2233524  GSM2233525  GSM2233526  GSM2233527  GSM2233528  \\\n",
       "ID_REF                                                                  \n",
       "1007_s_at    9.382466    9.292576    9.122197    9.068594    9.066957   \n",
       "1053_at      5.217553    4.761193    4.915572    4.420729    5.253055   \n",
       "117_at       2.873187    2.342134    2.678053    2.444795    3.236246   \n",
       "121_at       3.113110    2.913583    2.966424    2.798382    2.941285   \n",
       "1294_at      2.443089    2.478089    2.504275    2.556177    2.320297   \n",
       "\n",
       "name          ...      GSM2235513  GSM2235514  GSM2235515  GSM2235516  \\\n",
       "ID_REF        ...                                                       \n",
       "1007_s_at     ...             NaN         NaN         NaN         NaN   \n",
       "1053_at       ...             NaN         NaN         NaN         NaN   \n",
       "117_at        ...             NaN         NaN         NaN         NaN   \n",
       "121_at        ...             NaN         NaN         NaN         NaN   \n",
       "1294_at       ...             NaN         NaN         NaN         NaN   \n",
       "\n",
       "name       GSM2235517  GSM2235518  GSM2235519  GSM2235520  GSM2235521  \\\n",
       "ID_REF                                                                  \n",
       "1007_s_at         NaN         NaN         NaN         NaN         NaN   \n",
       "1053_at           NaN         NaN         NaN         NaN         NaN   \n",
       "117_at            NaN         NaN         NaN         NaN         NaN   \n",
       "121_at            NaN         NaN         NaN         NaN         NaN   \n",
       "1294_at           NaN         NaN         NaN         NaN         NaN   \n",
       "\n",
       "name       GSM2235522  \n",
       "ID_REF                 \n",
       "1007_s_at         NaN  \n",
       "1053_at           NaN  \n",
       "117_at            NaN  \n",
       "121_at            NaN  \n",
       "1294_at           NaN  \n",
       "\n",
       "[5 rows x 2004 columns]"
      ]
     },
     "execution_count": 18,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "samples.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>channel_count</th>\n",
       "      <th>characteristics_ch1.0.subject id</th>\n",
       "      <th>characteristics_ch1.1.age</th>\n",
       "      <th>characteristics_ch1.10.sum of cerad rating scores in multiple brain regions</th>\n",
       "      <th>characteristics_ch1.11.sum of neurofibrillary tangles density in multiple brain regions</th>\n",
       "      <th>characteristics_ch1.12.brain region</th>\n",
       "      <th>characteristics_ch1.13.tissue</th>\n",
       "      <th>characteristics_ch1.2.Sex</th>\n",
       "      <th>characteristics_ch1.3.race</th>\n",
       "      <th>characteristics_ch1.4.postmortem interval minutes</th>\n",
       "      <th>...</th>\n",
       "      <th>scan_protocol</th>\n",
       "      <th>series_id</th>\n",
       "      <th>source_name_ch1</th>\n",
       "      <th>status</th>\n",
       "      <th>submission_date</th>\n",
       "      <th>supplementary_file</th>\n",
       "      <th>taxid_ch1</th>\n",
       "      <th>title</th>\n",
       "      <th>treatment_protocol_ch1</th>\n",
       "      <th>type</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>GSM2233519</th>\n",
       "      <td>1</td>\n",
       "      <td>495</td>\n",
       "      <td>69</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>Amygdala</td>\n",
       "      <td>post-mortem brain</td>\n",
       "      <td>male</td>\n",
       "      <td>black</td>\n",
       "      <td>255</td>\n",
       "      <td>...</td>\n",
       "      <td>followed a protocol described in the Gene Logi...</td>\n",
       "      <td>GSE84422</td>\n",
       "      <td>Amygdala, 69 yr old male</td>\n",
       "      <td>Public on Aug 19 2016</td>\n",
       "      <td>Jul 14 2016</td>\n",
       "      <td>ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2233...</td>\n",
       "      <td>9606</td>\n",
       "      <td>Subject 495, region Amygdala</td>\n",
       "      <td>N/A</td>\n",
       "      <td>RNA</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>GSM2233520</th>\n",
       "      <td>1</td>\n",
       "      <td>551</td>\n",
       "      <td>85</td>\n",
       "      <td>4</td>\n",
       "      <td>2</td>\n",
       "      <td>Amygdala</td>\n",
       "      <td>post-mortem brain</td>\n",
       "      <td>female</td>\n",
       "      <td>white</td>\n",
       "      <td>260</td>\n",
       "      <td>...</td>\n",
       "      <td>followed a protocol described in the Gene Logi...</td>\n",
       "      <td>GSE84422</td>\n",
       "      <td>Amygdala, 85 yr old female</td>\n",
       "      <td>Public on Aug 19 2016</td>\n",
       "      <td>Jul 14 2016</td>\n",
       "      <td>ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2233...</td>\n",
       "      <td>9606</td>\n",
       "      <td>Subject 551, region Amygdala</td>\n",
       "      <td>N/A</td>\n",
       "      <td>RNA</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>GSM2233521</th>\n",
       "      <td>1</td>\n",
       "      <td>625</td>\n",
       "      <td>102</td>\n",
       "      <td>5</td>\n",
       "      <td>10</td>\n",
       "      <td>Amygdala</td>\n",
       "      <td>post-mortem brain</td>\n",
       "      <td>female</td>\n",
       "      <td>white</td>\n",
       "      <td>423</td>\n",
       "      <td>...</td>\n",
       "      <td>followed a protocol described in the Gene Logi...</td>\n",
       "      <td>GSE84422</td>\n",
       "      <td>Amygdala, 102 yr old female</td>\n",
       "      <td>Public on Aug 19 2016</td>\n",
       "      <td>Jul 14 2016</td>\n",
       "      <td>ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2233...</td>\n",
       "      <td>9606</td>\n",
       "      <td>Subject 625, region Amygdala</td>\n",
       "      <td>N/A</td>\n",
       "      <td>RNA</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>GSM2233522</th>\n",
       "      <td>1</td>\n",
       "      <td>776</td>\n",
       "      <td>95</td>\n",
       "      <td>0</td>\n",
       "      <td>4</td>\n",
       "      <td>Amygdala</td>\n",
       "      <td>post-mortem brain</td>\n",
       "      <td>male</td>\n",
       "      <td>hispanic</td>\n",
       "      <td>245</td>\n",
       "      <td>...</td>\n",
       "      <td>followed a protocol described in the Gene Logi...</td>\n",
       "      <td>GSE84422</td>\n",
       "      <td>Amygdala, 95 yr old male</td>\n",
       "      <td>Public on Aug 19 2016</td>\n",
       "      <td>Jul 14 2016</td>\n",
       "      <td>ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2233...</td>\n",
       "      <td>9606</td>\n",
       "      <td>Subject 776, region Amygdala</td>\n",
       "      <td>N/A</td>\n",
       "      <td>RNA</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>GSM2233523</th>\n",
       "      <td>1</td>\n",
       "      <td>800</td>\n",
       "      <td>89</td>\n",
       "      <td>1</td>\n",
       "      <td>4</td>\n",
       "      <td>Amygdala</td>\n",
       "      <td>post-mortem brain</td>\n",
       "      <td>female</td>\n",
       "      <td>white</td>\n",
       "      <td>140</td>\n",
       "      <td>...</td>\n",
       "      <td>followed a protocol described in the Gene Logi...</td>\n",
       "      <td>GSE84422</td>\n",
       "      <td>Amygdala, 89 yr old female</td>\n",
       "      <td>Public on Aug 19 2016</td>\n",
       "      <td>Jul 14 2016</td>\n",
       "      <td>ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2233...</td>\n",
       "      <td>9606</td>\n",
       "      <td>Subject 800, region Amygdala</td>\n",
       "      <td>N/A</td>\n",
       "      <td>RNA</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>5 rows × 45 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "           channel_count characteristics_ch1.0.subject id  \\\n",
       "GSM2233519             1                              495   \n",
       "GSM2233520             1                              551   \n",
       "GSM2233521             1                              625   \n",
       "GSM2233522             1                              776   \n",
       "GSM2233523             1                              800   \n",
       "\n",
       "           characteristics_ch1.1.age  \\\n",
       "GSM2233519                        69   \n",
       "GSM2233520                        85   \n",
       "GSM2233521                       102   \n",
       "GSM2233522                        95   \n",
       "GSM2233523                        89   \n",
       "\n",
       "           characteristics_ch1.10.sum of cerad rating scores in multiple brain regions  \\\n",
       "GSM2233519                                                  0                            \n",
       "GSM2233520                                                  4                            \n",
       "GSM2233521                                                  5                            \n",
       "GSM2233522                                                  0                            \n",
       "GSM2233523                                                  1                            \n",
       "\n",
       "           characteristics_ch1.11.sum of neurofibrillary tangles density in multiple brain regions  \\\n",
       "GSM2233519                                                  1                                        \n",
       "GSM2233520                                                  2                                        \n",
       "GSM2233521                                                 10                                        \n",
       "GSM2233522                                                  4                                        \n",
       "GSM2233523                                                  4                                        \n",
       "\n",
       "           characteristics_ch1.12.brain region characteristics_ch1.13.tissue  \\\n",
       "GSM2233519                            Amygdala             post-mortem brain   \n",
       "GSM2233520                            Amygdala             post-mortem brain   \n",
       "GSM2233521                            Amygdala             post-mortem brain   \n",
       "GSM2233522                            Amygdala             post-mortem brain   \n",
       "GSM2233523                            Amygdala             post-mortem brain   \n",
       "\n",
       "           characteristics_ch1.2.Sex characteristics_ch1.3.race  \\\n",
       "GSM2233519                      male                      black   \n",
       "GSM2233520                    female                      white   \n",
       "GSM2233521                    female                      white   \n",
       "GSM2233522                      male                   hispanic   \n",
       "GSM2233523                    female                      white   \n",
       "\n",
       "           characteristics_ch1.4.postmortem interval minutes ...   \\\n",
       "GSM2233519                                               255 ...    \n",
       "GSM2233520                                               260 ...    \n",
       "GSM2233521                                               423 ...    \n",
       "GSM2233522                                               245 ...    \n",
       "GSM2233523                                               140 ...    \n",
       "\n",
       "                                                scan_protocol series_id  \\\n",
       "GSM2233519  followed a protocol described in the Gene Logi...  GSE84422   \n",
       "GSM2233520  followed a protocol described in the Gene Logi...  GSE84422   \n",
       "GSM2233521  followed a protocol described in the Gene Logi...  GSE84422   \n",
       "GSM2233522  followed a protocol described in the Gene Logi...  GSE84422   \n",
       "GSM2233523  followed a protocol described in the Gene Logi...  GSE84422   \n",
       "\n",
       "                        source_name_ch1                 status  \\\n",
       "GSM2233519     Amygdala, 69 yr old male  Public on Aug 19 2016   \n",
       "GSM2233520   Amygdala, 85 yr old female  Public on Aug 19 2016   \n",
       "GSM2233521  Amygdala, 102 yr old female  Public on Aug 19 2016   \n",
       "GSM2233522     Amygdala, 95 yr old male  Public on Aug 19 2016   \n",
       "GSM2233523   Amygdala, 89 yr old female  Public on Aug 19 2016   \n",
       "\n",
       "           submission_date                                 supplementary_file  \\\n",
       "GSM2233519     Jul 14 2016  ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2233...   \n",
       "GSM2233520     Jul 14 2016  ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2233...   \n",
       "GSM2233521     Jul 14 2016  ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2233...   \n",
       "GSM2233522     Jul 14 2016  ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2233...   \n",
       "GSM2233523     Jul 14 2016  ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2233...   \n",
       "\n",
       "           taxid_ch1                         title treatment_protocol_ch1 type  \n",
       "GSM2233519      9606  Subject 495, region Amygdala                    N/A  RNA  \n",
       "GSM2233520      9606  Subject 551, region Amygdala                    N/A  RNA  \n",
       "GSM2233521      9606  Subject 625, region Amygdala                    N/A  RNA  \n",
       "GSM2233522      9606  Subject 776, region Amygdala                    N/A  RNA  \n",
       "GSM2233523      9606  Subject 800, region Amygdala                    N/A  RNA  \n",
       "\n",
       "[5 rows x 45 columns]"
      ]
     },
     "execution_count": 23,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "gse.phenotype_data.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 37,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "                                    title              source_name_ch1  \\\n",
      "GSM2233519   Subject 495, region Amygdala     Amygdala, 69 yr old male   \n",
      "GSM2233520   Subject 551, region Amygdala   Amygdala, 85 yr old female   \n",
      "GSM2233521   Subject 625, region Amygdala  Amygdala, 102 yr old female   \n",
      "GSM2233522   Subject 776, region Amygdala     Amygdala, 95 yr old male   \n",
      "GSM2233523   Subject 800, region Amygdala   Amygdala, 89 yr old female   \n",
      "GSM2233524   Subject 532, region Amygdala   Amygdala, 92 yr old female   \n",
      "GSM2233525   Subject 843, region Amygdala     Amygdala, 66 yr old male   \n",
      "GSM2233526   Subject 923, region Amygdala     Amygdala, 69 yr old male   \n",
      "GSM2233527   Subject 757, region Amygdala   Amygdala, 96 yr old female   \n",
      "GSM2233528  Subject 1039, region Amygdala     Amygdala, 85 yr old male   \n",
      "GSM2233529   Subject 985, region Amygdala     Amygdala, 78 yr old male   \n",
      "GSM2233530  Subject 1009, region Amygdala     Amygdala, 76 yr old male   \n",
      "GSM2233531  Subject 1024, region Amygdala   Amygdala, 79 yr old female   \n",
      "GSM2233532  Subject 1031, region Amygdala     Amygdala, 64 yr old male   \n",
      "GSM2233533  Subject 1036, region Amygdala     Amygdala, 93 yr old male   \n",
      "GSM2233534   Subject 176, region Amygdala   Amygdala, 72 yr old female   \n",
      "GSM2233535   Subject 215, region Amygdala   Amygdala, 91 yr old female   \n",
      "GSM2233536   Subject 234, region Amygdala   Amygdala, 99 yr old female   \n",
      "GSM2233537   Subject 256, region Amygdala   Amygdala, 99 yr old female   \n",
      "GSM2233538   Subject 332, region Amygdala   Amygdala, 94 yr old female   \n",
      "GSM2233539   Subject 347, region Amygdala   Amygdala, 84 yr old female   \n",
      "GSM2233540   Subject 364, region Amygdala   Amygdala, 84 yr old female   \n",
      "GSM2233541   Subject 375, region Amygdala   Amygdala, 87 yr old female   \n",
      "GSM2233542   Subject 457, region Amygdala   Amygdala, 84 yr old female   \n",
      "GSM2233543   Subject 480, region Amygdala   Amygdala, 91 yr old female   \n",
      "GSM2233544   Subject 571, region Amygdala   Amygdala, 89 yr old female   \n",
      "GSM2233545   Subject 592, region Amygdala   Amygdala, 95 yr old female   \n",
      "GSM2233546   Subject 233, region Amygdala  Amygdala, 100 yr old female   \n",
      "GSM2233547   Subject 626, region Amygdala   Amygdala, 88 yr old female   \n",
      "GSM2233548   Subject 665, region Amygdala   Amygdala, 92 yr old female   \n",
      "...                                   ...                          ...   \n",
      "GSM2235493    Subject 532, region Putamen    Putamen, 92 yr old female   \n",
      "GSM2235494    Subject 551, region Putamen    Putamen, 85 yr old female   \n",
      "GSM2235495    Subject 571, region Putamen    Putamen, 89 yr old female   \n",
      "GSM2235496    Subject 592, region Putamen    Putamen, 95 yr old female   \n",
      "GSM2235497    Subject 616, region Putamen    Putamen, 91 yr old female   \n",
      "GSM2235498    Subject 618, region Putamen      Putamen, 82 yr old male   \n",
      "GSM2235499    Subject 625, region Putamen   Putamen, 102 yr old female   \n",
      "GSM2235500    Subject 639, region Putamen    Putamen, 86 yr old female   \n",
      "GSM2235501     Subject 66, region Putamen      Putamen, 89 yr old male   \n",
      "GSM2235502    Subject 752, region Putamen    Putamen, 84 yr old female   \n",
      "GSM2235503    Subject 755, region Putamen      Putamen, 87 yr old male   \n",
      "GSM2235504    Subject 786, region Putamen    Putamen, 95 yr old female   \n",
      "GSM2235505    Subject 800, region Putamen    Putamen, 89 yr old female   \n",
      "GSM2235506     Subject 83, region Putamen    Putamen, 90 yr old female   \n",
      "GSM2235507    Subject 831, region Putamen    Putamen, 88 yr old female   \n",
      "GSM2235508    Subject 836, region Putamen      Putamen, 64 yr old male   \n",
      "GSM2235509    Subject 843, region Putamen      Putamen, 66 yr old male   \n",
      "GSM2235510    Subject 865, region Putamen    Putamen, 79 yr old female   \n",
      "GSM2235511    Subject 869, region Putamen    Putamen, 93 yr old female   \n",
      "GSM2235512    Subject 870, region Putamen    Putamen, 85 yr old female   \n",
      "GSM2235513    Subject 879, region Putamen    Putamen, 91 yr old female   \n",
      "GSM2235514    Subject 882, region Putamen    Putamen, 90 yr old female   \n",
      "GSM2235515    Subject 902, region Putamen    Putamen, 85 yr old female   \n",
      "GSM2235516    Subject 940, region Putamen    Putamen, 83 yr old female   \n",
      "GSM2235517    Subject 941, region Putamen      Putamen, 88 yr old male   \n",
      "GSM2235518    Subject 963, region Putamen    Putamen, 90 yr old female   \n",
      "GSM2235519    Subject 975, region Putamen    Putamen, 90 yr old female   \n",
      "GSM2235520    Subject 988, region Putamen    Putamen, 79 yr old female   \n",
      "GSM2235521    Subject 989, region Putamen      Putamen, 73 yr old male   \n",
      "GSM2235522    Subject 992, region Putamen    Putamen, 88 yr old female   \n",
      "\n",
      "           characteristics_ch1.8.neuropathological category  \\\n",
      "GSM2233519                                           Normal   \n",
      "GSM2233520                                           Normal   \n",
      "GSM2233521                                           Normal   \n",
      "GSM2233522                                           Normal   \n",
      "GSM2233523                                           Normal   \n",
      "GSM2233524                                           Normal   \n",
      "GSM2233525                                           Normal   \n",
      "GSM2233526                                           Normal   \n",
      "GSM2233527                                           Normal   \n",
      "GSM2233528                                           Normal   \n",
      "GSM2233529                                           Normal   \n",
      "GSM2233530                                           Normal   \n",
      "GSM2233531                                           Normal   \n",
      "GSM2233532                                           Normal   \n",
      "GSM2233533                                           Normal   \n",
      "GSM2233534                                      definite AD   \n",
      "GSM2233535                                      definite AD   \n",
      "GSM2233536                                      Possible AD   \n",
      "GSM2233537                                      definite AD   \n",
      "GSM2233538                                      definite AD   \n",
      "GSM2233539                                      definite AD   \n",
      "GSM2233540                                      definite AD   \n",
      "GSM2233541                                      definite AD   \n",
      "GSM2233542                                      definite AD   \n",
      "GSM2233543                                      Possible AD   \n",
      "GSM2233544                                      definite AD   \n",
      "GSM2233545                                      Probable AD   \n",
      "GSM2233546                                      Probable AD   \n",
      "GSM2233547                                      definite AD   \n",
      "GSM2233548                                      Probable AD   \n",
      "...                                                     ...   \n",
      "GSM2235493                                           Normal   \n",
      "GSM2235494                                           Normal   \n",
      "GSM2235495                                      definite AD   \n",
      "GSM2235496                                      Probable AD   \n",
      "GSM2235497                                      Possible AD   \n",
      "GSM2235498                                      Possible AD   \n",
      "GSM2235499                                           Normal   \n",
      "GSM2235500                                      Possible AD   \n",
      "GSM2235501                                      definite AD   \n",
      "GSM2235502                                      Probable AD   \n",
      "GSM2235503                                      definite AD   \n",
      "GSM2235504                                      definite AD   \n",
      "GSM2235505                                           Normal   \n",
      "GSM2235506                                      Possible AD   \n",
      "GSM2235507                                      Probable AD   \n",
      "GSM2235508                                      Possible AD   \n",
      "GSM2235509                                           Normal   \n",
      "GSM2235510                                      Possible AD   \n",
      "GSM2235511                                      Probable AD   \n",
      "GSM2235512                                      definite AD   \n",
      "GSM2235513                                      Possible AD   \n",
      "GSM2235514                                      Probable AD   \n",
      "GSM2235515                                      Probable AD   \n",
      "GSM2235516                                      Possible AD   \n",
      "GSM2235517                                      Possible AD   \n",
      "GSM2235518                                      Probable AD   \n",
      "GSM2235519                                      definite AD   \n",
      "GSM2235520                                      Probable AD   \n",
      "GSM2235521                                      definite AD   \n",
      "GSM2235522                                      definite AD   \n",
      "\n",
      "           characteristics_ch1.3.race  \\\n",
      "GSM2233519                      black   \n",
      "GSM2233520                      white   \n",
      "GSM2233521                      white   \n",
      "GSM2233522                   hispanic   \n",
      "GSM2233523                      white   \n",
      "GSM2233524                      white   \n",
      "GSM2233525                      white   \n",
      "GSM2233526                      asian   \n",
      "GSM2233527                      white   \n",
      "GSM2233528                      white   \n",
      "GSM2233529                   hispanic   \n",
      "GSM2233530                      white   \n",
      "GSM2233531                      white   \n",
      "GSM2233532                      black   \n",
      "GSM2233533                      white   \n",
      "GSM2233534                      white   \n",
      "GSM2233535                      black   \n",
      "GSM2233536                      white   \n",
      "GSM2233537                      white   \n",
      "GSM2233538                      white   \n",
      "GSM2233539                      white   \n",
      "GSM2233540                      white   \n",
      "GSM2233541                      black   \n",
      "GSM2233542                      white   \n",
      "GSM2233543                      white   \n",
      "GSM2233544                      black   \n",
      "GSM2233545                      white   \n",
      "GSM2233546                      black   \n",
      "GSM2233547                      white   \n",
      "GSM2233548                      white   \n",
      "...                               ...   \n",
      "GSM2235493                      white   \n",
      "GSM2235494                      white   \n",
      "GSM2235495                      black   \n",
      "GSM2235496                      white   \n",
      "GSM2235497                      white   \n",
      "GSM2235498                      white   \n",
      "GSM2235499                      white   \n",
      "GSM2235500                      white   \n",
      "GSM2235501                      white   \n",
      "GSM2235502                      black   \n",
      "GSM2235503                      white   \n",
      "GSM2235504                      white   \n",
      "GSM2235505                      white   \n",
      "GSM2235506                      white   \n",
      "GSM2235507                      white   \n",
      "GSM2235508                      white   \n",
      "GSM2235509                      white   \n",
      "GSM2235510                      black   \n",
      "GSM2235511                      white   \n",
      "GSM2235512                      white   \n",
      "GSM2235513                      white   \n",
      "GSM2235514                      white   \n",
      "GSM2235515                      black   \n",
      "GSM2235516                      white   \n",
      "GSM2235517                      white   \n",
      "GSM2235518                      black   \n",
      "GSM2235519                      white   \n",
      "GSM2235520                   hispanic   \n",
      "GSM2235521                      white   \n",
      "GSM2235522                      white   \n",
      "\n",
      "           characteristics_ch1.11.sum of neurofibrillary tangles density in multiple brain regions  \\\n",
      "GSM2233519                                                  1                                        \n",
      "GSM2233520                                                  2                                        \n",
      "GSM2233521                                                 10                                        \n",
      "GSM2233522                                                  4                                        \n",
      "GSM2233523                                                  4                                        \n",
      "GSM2233524                                                  6                                        \n",
      "GSM2233525                                                  7                                        \n",
      "GSM2233526                                                  1                                        \n",
      "GSM2233527                                                  4                                        \n",
      "GSM2233528                                                  4                                        \n",
      "GSM2233529                                                  8                                        \n",
      "GSM2233530                                                  2                                        \n",
      "GSM2233531                                                  3                                        \n",
      "GSM2233532                                                  0                                        \n",
      "GSM2233533                                                  0                                        \n",
      "GSM2233534                                                 33                                        \n",
      "GSM2233535                                                 24                                        \n",
      "GSM2233536                                                  5                                        \n",
      "GSM2233537                                                  9                                        \n",
      "GSM2233538                                                  2                                        \n",
      "GSM2233539                                                  2                                        \n",
      "GSM2233540                                                 26                                        \n",
      "GSM2233541                                                 14                                        \n",
      "GSM2233542                                                 13                                        \n",
      "GSM2233543                                                 10                                        \n",
      "GSM2233544                                                 10                                        \n",
      "GSM2233545                                                 20                                        \n",
      "GSM2233546                                                  9                                        \n",
      "GSM2233547                                                 28                                        \n",
      "GSM2233548                                                  5                                        \n",
      "...                                                       ...                                        \n",
      "GSM2235493                                                  6                                        \n",
      "GSM2235494                                                  2                                        \n",
      "GSM2235495                                                 10                                        \n",
      "GSM2235496                                                 20                                        \n",
      "GSM2235497                                                  3                                        \n",
      "GSM2235498                                                 11                                        \n",
      "GSM2235499                                                 10                                        \n",
      "GSM2235500                                                  9                                        \n",
      "GSM2235501                                                  9                                        \n",
      "GSM2235502                                                  8                                        \n",
      "GSM2235503                                                 26                                        \n",
      "GSM2235504                                                 16                                        \n",
      "GSM2235505                                                  4                                        \n",
      "GSM2235506                                                 11                                        \n",
      "GSM2235507                                                 14                                        \n",
      "GSM2235508                                                  3                                        \n",
      "GSM2235509                                                  7                                        \n",
      "GSM2235510                                                  4                                        \n",
      "GSM2235511                                                 20                                        \n",
      "GSM2235512                                                  9                                        \n",
      "GSM2235513                                                 12                                        \n",
      "GSM2235514                                                  9                                        \n",
      "GSM2235515                                                  8                                        \n",
      "GSM2235516                                                 20                                        \n",
      "GSM2235517                                                  8                                        \n",
      "GSM2235518                                                 10                                        \n",
      "GSM2235519                                                 16                                        \n",
      "GSM2235520                                                 16                                        \n",
      "GSM2235521                                                 31                                        \n",
      "GSM2235522                                                 25                                        \n",
      "\n",
      "           characteristics_ch1.10.sum of cerad rating scores in multiple brain regions  \n",
      "GSM2233519                                                  0                           \n",
      "GSM2233520                                                  4                           \n",
      "GSM2233521                                                  5                           \n",
      "GSM2233522                                                  0                           \n",
      "GSM2233523                                                  1                           \n",
      "GSM2233524                                                 11                           \n",
      "GSM2233525                                                  0                           \n",
      "GSM2233526                                                  0                           \n",
      "GSM2233527                                                  0                           \n",
      "GSM2233528                                                  0                           \n",
      "GSM2233529                                                 11                           \n",
      "GSM2233530                                                  3                           \n",
      "GSM2233531                                                  0                           \n",
      "GSM2233532                                                  0                           \n",
      "GSM2233533                                                  0                           \n",
      "GSM2233534                                                 33                           \n",
      "GSM2233535                                                 29                           \n",
      "GSM2233536                                                 15                           \n",
      "GSM2233537                                                 20                           \n",
      "GSM2233538                                                 29                           \n",
      "GSM2233539                                                 33                           \n",
      "GSM2233540                                                 35                           \n",
      "GSM2233541                                                 26                           \n",
      "GSM2233542                                                 20                           \n",
      "GSM2233543                                                 21                           \n",
      "GSM2233544                                                 17                           \n",
      "GSM2233545                                                 23                           \n",
      "GSM2233546                                                 11                           \n",
      "GSM2233547                                                 17                           \n",
      "GSM2233548                                                 15                           \n",
      "...                                                       ...                           \n",
      "GSM2235493                                                 11                           \n",
      "GSM2235494                                                  4                           \n",
      "GSM2235495                                                 17                           \n",
      "GSM2235496                                                 23                           \n",
      "GSM2235497                                                  8                           \n",
      "GSM2235498                                                  3                           \n",
      "GSM2235499                                                  5                           \n",
      "GSM2235500                                                  0                           \n",
      "GSM2235501                                                 33                           \n",
      "GSM2235502                                                 16                           \n",
      "GSM2235503                                                 21                           \n",
      "GSM2235504                                                 19                           \n",
      "GSM2235505                                                  1                           \n",
      "GSM2235506                                                 23                           \n",
      "GSM2235507                                                 17                           \n",
      "GSM2235508                                                 15                           \n",
      "GSM2235509                                                  0                           \n",
      "GSM2235510                                                 16                           \n",
      "GSM2235511                                                 15                           \n",
      "GSM2235512                                                 14                           \n",
      "GSM2235513                                                 19                           \n",
      "GSM2235514                                                 13                           \n",
      "GSM2235515                                                 16                           \n",
      "GSM2235516                                                 19                           \n",
      "GSM2235517                                                  9                           \n",
      "GSM2235518                                                 10                           \n",
      "GSM2235519                                                 15                           \n",
      "GSM2235520                                                 21                           \n",
      "GSM2235521                                                 31                           \n",
      "GSM2235522                                                 19                           \n",
      "\n",
      "[2004 rows x 6 columns]\n"
     ]
    }
   ],
   "source": [
    "print (gse.phenotype_data[[\"title\", \"source_name_ch1\" , \"characteristics_ch1.8.neuropathological category\", \"characteristics_ch1.3.race\", \"characteristics_ch1.11.sum of neurofibrillary tangles density in multiple brain regions\", \"characteristics_ch1.10.sum of cerad rating scores in multiple brain regions\"]])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "      Experiment         Type\n",
      "0     GSM2233519       Normal\n",
      "1     GSM2233520       Normal\n",
      "2     GSM2233521       Normal\n",
      "3     GSM2233522       Normal\n",
      "4     GSM2233523       Normal\n",
      "5     GSM2233524       Normal\n",
      "6     GSM2233525       Normal\n",
      "7     GSM2233526       Normal\n",
      "8     GSM2233527       Normal\n",
      "9     GSM2233528       Normal\n",
      "10    GSM2233529       Normal\n",
      "11    GSM2233530       Normal\n",
      "12    GSM2233531       Normal\n",
      "13    GSM2233532       Normal\n",
      "14    GSM2233533       Normal\n",
      "15    GSM2233534  definite AD\n",
      "16    GSM2233535  definite AD\n",
      "17    GSM2233536  Possible AD\n",
      "18    GSM2233537  definite AD\n",
      "19    GSM2233538  definite AD\n",
      "20    GSM2233539  definite AD\n",
      "21    GSM2233540  definite AD\n",
      "22    GSM2233541  definite AD\n",
      "23    GSM2233542  definite AD\n",
      "24    GSM2233543  Possible AD\n",
      "25    GSM2233544  definite AD\n",
      "26    GSM2233545  Probable AD\n",
      "27    GSM2233546  Probable AD\n",
      "28    GSM2233547  definite AD\n",
      "29    GSM2233548  Probable AD\n",
      "...          ...          ...\n",
      "1974  GSM2235493       Normal\n",
      "1975  GSM2235494       Normal\n",
      "1976  GSM2235495  definite AD\n",
      "1977  GSM2235496  Probable AD\n",
      "1978  GSM2235497  Possible AD\n",
      "1979  GSM2235498  Possible AD\n",
      "1980  GSM2235499       Normal\n",
      "1981  GSM2235500  Possible AD\n",
      "1982  GSM2235501  definite AD\n",
      "1983  GSM2235502  Probable AD\n",
      "1984  GSM2235503  definite AD\n",
      "1985  GSM2235504  definite AD\n",
      "1986  GSM2235505       Normal\n",
      "1987  GSM2235506  Possible AD\n",
      "1988  GSM2235507  Probable AD\n",
      "1989  GSM2235508  Possible AD\n",
      "1990  GSM2235509       Normal\n",
      "1991  GSM2235510  Possible AD\n",
      "1992  GSM2235511  Probable AD\n",
      "1993  GSM2235512  definite AD\n",
      "1994  GSM2235513  Possible AD\n",
      "1995  GSM2235514  Probable AD\n",
      "1996  GSM2235515  Probable AD\n",
      "1997  GSM2235516  Possible AD\n",
      "1998  GSM2235517  Possible AD\n",
      "1999  GSM2235518  Probable AD\n",
      "2000  GSM2235519  definite AD\n",
      "2001  GSM2235520  Probable AD\n",
      "2002  GSM2235521  definite AD\n",
      "2003  GSM2235522  definite AD\n",
      "\n",
      "[2004 rows x 2 columns]\n"
     ]
    }
   ],
   "source": [
    "experiments = {}\n",
    "for i, (idx, row) in enumerate(gse.phenotype_data.iterrows()):\n",
    "    tmp = {}\n",
    "    tmp[\"Experiment\"] = idx\n",
    "    tmp[\"Type\"] = row[\"characteristics_ch1.8.neuropathological category\"] \n",
    "    experiments[i] = tmp\n",
    "experiments = pd.DataFrame(experiments).T\n",
    "print (experiments)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Normal\n",
      "Possible AD\n",
      "Probable AD\n",
      "definite AD\n"
     ]
    }
   ],
   "source": [
    "for time, group in experiments.groupby(\"Type\"):\n",
    "    print(time)\n",
    "    transfection_name = group[group.Type == \"Normal\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Normal\n",
      "Possible AD\n",
      "Probable AD\n",
      "definite AD\n"
     ]
    }
   ],
   "source": [
    "for i, a in experiments.groupby(['Type']):\n",
    "    print(i)\n",
    "    if i == 'Normal' :\n",
    "        transfection_name = a"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Experiment</th>\n",
       "      <th>Type</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>GSM2233519</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>GSM2233520</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>GSM2233521</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>GSM2233522</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>GSM2233523</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>GSM2233524</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>GSM2233525</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>GSM2233526</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>GSM2233527</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>GSM2233528</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>GSM2233529</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>GSM2233530</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>GSM2233531</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>GSM2233532</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>GSM2233533</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>51</th>\n",
       "      <td>GSM2233570</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>52</th>\n",
       "      <td>GSM2233571</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>53</th>\n",
       "      <td>GSM2233572</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>54</th>\n",
       "      <td>GSM2233573</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>55</th>\n",
       "      <td>GSM2233574</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>56</th>\n",
       "      <td>GSM2233575</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>57</th>\n",
       "      <td>GSM2233576</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>58</th>\n",
       "      <td>GSM2233577</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>59</th>\n",
       "      <td>GSM2233578</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>60</th>\n",
       "      <td>GSM2233579</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>61</th>\n",
       "      <td>GSM2233580</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>62</th>\n",
       "      <td>GSM2233581</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>63</th>\n",
       "      <td>GSM2233582</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>103</th>\n",
       "      <td>GSM2233622</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>106</th>\n",
       "      <td>GSM2233625</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1864</th>\n",
       "      <td>GSM2235383</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1865</th>\n",
       "      <td>GSM2235384</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1866</th>\n",
       "      <td>GSM2235385</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1870</th>\n",
       "      <td>GSM2235389</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1875</th>\n",
       "      <td>GSM2235394</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1877</th>\n",
       "      <td>GSM2235396</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1879</th>\n",
       "      <td>GSM2235398</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1881</th>\n",
       "      <td>GSM2235400</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1882</th>\n",
       "      <td>GSM2235401</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1890</th>\n",
       "      <td>GSM2235409</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1903</th>\n",
       "      <td>GSM2235422</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1904</th>\n",
       "      <td>GSM2235423</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1919</th>\n",
       "      <td>GSM2235438</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1920</th>\n",
       "      <td>GSM2235439</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1921</th>\n",
       "      <td>GSM2235440</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1926</th>\n",
       "      <td>GSM2235445</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1932</th>\n",
       "      <td>GSM2235451</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1935</th>\n",
       "      <td>GSM2235454</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1939</th>\n",
       "      <td>GSM2235458</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1945</th>\n",
       "      <td>GSM2235464</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1949</th>\n",
       "      <td>GSM2235468</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1956</th>\n",
       "      <td>GSM2235475</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1958</th>\n",
       "      <td>GSM2235477</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1972</th>\n",
       "      <td>GSM2235491</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1973</th>\n",
       "      <td>GSM2235492</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1974</th>\n",
       "      <td>GSM2235493</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1975</th>\n",
       "      <td>GSM2235494</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1980</th>\n",
       "      <td>GSM2235499</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1986</th>\n",
       "      <td>GSM2235505</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1990</th>\n",
       "      <td>GSM2235509</td>\n",
       "      <td>Normal</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>456 rows × 2 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "      Experiment    Type\n",
       "0     GSM2233519  Normal\n",
       "1     GSM2233520  Normal\n",
       "2     GSM2233521  Normal\n",
       "3     GSM2233522  Normal\n",
       "4     GSM2233523  Normal\n",
       "5     GSM2233524  Normal\n",
       "6     GSM2233525  Normal\n",
       "7     GSM2233526  Normal\n",
       "8     GSM2233527  Normal\n",
       "9     GSM2233528  Normal\n",
       "10    GSM2233529  Normal\n",
       "11    GSM2233530  Normal\n",
       "12    GSM2233531  Normal\n",
       "13    GSM2233532  Normal\n",
       "14    GSM2233533  Normal\n",
       "51    GSM2233570  Normal\n",
       "52    GSM2233571  Normal\n",
       "53    GSM2233572  Normal\n",
       "54    GSM2233573  Normal\n",
       "55    GSM2233574  Normal\n",
       "56    GSM2233575  Normal\n",
       "57    GSM2233576  Normal\n",
       "58    GSM2233577  Normal\n",
       "59    GSM2233578  Normal\n",
       "60    GSM2233579  Normal\n",
       "61    GSM2233580  Normal\n",
       "62    GSM2233581  Normal\n",
       "63    GSM2233582  Normal\n",
       "103   GSM2233622  Normal\n",
       "106   GSM2233625  Normal\n",
       "...          ...     ...\n",
       "1864  GSM2235383  Normal\n",
       "1865  GSM2235384  Normal\n",
       "1866  GSM2235385  Normal\n",
       "1870  GSM2235389  Normal\n",
       "1875  GSM2235394  Normal\n",
       "1877  GSM2235396  Normal\n",
       "1879  GSM2235398  Normal\n",
       "1881  GSM2235400  Normal\n",
       "1882  GSM2235401  Normal\n",
       "1890  GSM2235409  Normal\n",
       "1903  GSM2235422  Normal\n",
       "1904  GSM2235423  Normal\n",
       "1919  GSM2235438  Normal\n",
       "1920  GSM2235439  Normal\n",
       "1921  GSM2235440  Normal\n",
       "1926  GSM2235445  Normal\n",
       "1932  GSM2235451  Normal\n",
       "1935  GSM2235454  Normal\n",
       "1939  GSM2235458  Normal\n",
       "1945  GSM2235464  Normal\n",
       "1949  GSM2235468  Normal\n",
       "1956  GSM2235475  Normal\n",
       "1958  GSM2235477  Normal\n",
       "1972  GSM2235491  Normal\n",
       "1973  GSM2235492  Normal\n",
       "1974  GSM2235493  Normal\n",
       "1975  GSM2235494  Normal\n",
       "1980  GSM2235499  Normal\n",
       "1986  GSM2235505  Normal\n",
       "1990  GSM2235509  Normal\n",
       "\n",
       "[456 rows x 2 columns]"
      ]
     },
     "execution_count": 23,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "transfection_name"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "AD_sample = samples[transfection_name.Experiment]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 25,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "AD_sample=samples"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 26,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "AD_sample_annotated = AD_sample.reset_index().merge(gse.gpls['GPL570'].table[[\"ID\", \"ENTREZ_GENE_ID\"]],\n",
    "                                left_on='ID_REF', right_on=\"ID\", how='inner')\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 27,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "AD_sample_annotated = AD_sample_annotated.dropna(subset=[\"ENTREZ_GENE_ID\"])\n",
    "# remove probes with more than one gene assigned\n",
    "AD_sample_annotated = AD_sample_annotated[~AD_sample_annotated.ENTREZ_GENE_ID.str.contains(\"///\")]\n",
    "# for each gene average LFC over probes\n",
    "AD_sample_annotated = AD_sample_annotated.groupby(\"ENTREZ_GENE_ID\").median()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 28,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
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       "        vertical-align: top;\n",
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       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>GSM2233519</th>\n",
       "      <th>GSM2233520</th>\n",
       "      <th>GSM2233521</th>\n",
       "      <th>GSM2233522</th>\n",
       "      <th>GSM2233523</th>\n",
       "      <th>GSM2233524</th>\n",
       "      <th>GSM2233525</th>\n",
       "      <th>GSM2233526</th>\n",
       "      <th>GSM2233527</th>\n",
       "      <th>GSM2233528</th>\n",
       "      <th>...</th>\n",
       "      <th>GSM2235513</th>\n",
       "      <th>GSM2235514</th>\n",
       "      <th>GSM2235515</th>\n",
       "      <th>GSM2235516</th>\n",
       "      <th>GSM2235517</th>\n",
       "      <th>GSM2235518</th>\n",
       "      <th>GSM2235519</th>\n",
       "      <th>GSM2235520</th>\n",
       "      <th>GSM2235521</th>\n",
       "      <th>GSM2235522</th>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>ENTREZ_GENE_ID</th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>1.543797</td>\n",
       "      <td>1.477789</td>\n",
       "      <td>1.673879</td>\n",
       "      <td>1.860400</td>\n",
       "      <td>1.893914</td>\n",
       "      <td>1.547843</td>\n",
       "      <td>2.020133</td>\n",
       "      <td>1.720264</td>\n",
       "      <td>1.914527</td>\n",
       "      <td>1.428967</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>100</th>\n",
       "      <td>2.464945</td>\n",
       "      <td>2.890661</td>\n",
       "      <td>2.866258</td>\n",
       "      <td>2.152636</td>\n",
       "      <td>2.540259</td>\n",
       "      <td>3.479115</td>\n",
       "      <td>2.432803</td>\n",
       "      <td>2.619858</td>\n",
       "      <td>2.721902</td>\n",
       "      <td>2.636918</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1000</th>\n",
       "      <td>7.867101</td>\n",
       "      <td>7.755140</td>\n",
       "      <td>7.381221</td>\n",
       "      <td>7.871384</td>\n",
       "      <td>8.104229</td>\n",
       "      <td>7.715304</td>\n",
       "      <td>7.842744</td>\n",
       "      <td>7.803582</td>\n",
       "      <td>7.888642</td>\n",
       "      <td>7.596009</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10000</th>\n",
       "      <td>3.438438</td>\n",
       "      <td>5.077843</td>\n",
       "      <td>3.473742</td>\n",
       "      <td>4.000868</td>\n",
       "      <td>3.532898</td>\n",
       "      <td>3.283049</td>\n",
       "      <td>3.199576</td>\n",
       "      <td>3.392803</td>\n",
       "      <td>3.506436</td>\n",
       "      <td>3.465728</td>\n",
       "      <td>...</td>\n",
       "      <td>3.407337</td>\n",
       "      <td>3.057845</td>\n",
       "      <td>3.551977</td>\n",
       "      <td>4.088258</td>\n",
       "      <td>3.490249</td>\n",
       "      <td>3.524224</td>\n",
       "      <td>3.809056</td>\n",
       "      <td>3.433827</td>\n",
       "      <td>3.650891</td>\n",
       "      <td>3.679745</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>100009676</th>\n",
       "      <td>1.891133</td>\n",
       "      <td>1.461110</td>\n",
       "      <td>1.518252</td>\n",
       "      <td>1.742045</td>\n",
       "      <td>1.502510</td>\n",
       "      <td>2.106307</td>\n",
       "      <td>1.589607</td>\n",
       "      <td>1.724612</td>\n",
       "      <td>1.727502</td>\n",
       "      <td>1.900150</td>\n",
       "      <td>...</td>\n",
       "      <td>2.385480</td>\n",
       "      <td>2.037207</td>\n",
       "      <td>2.299614</td>\n",
       "      <td>2.543034</td>\n",
       "      <td>2.728000</td>\n",
       "      <td>2.540135</td>\n",
       "      <td>2.590416</td>\n",
       "      <td>2.470051</td>\n",
       "      <td>2.605727</td>\n",
       "      <td>2.574401</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>5 rows × 2004 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "                GSM2233519  GSM2233520  GSM2233521  GSM2233522  GSM2233523  \\\n",
       "ENTREZ_GENE_ID                                                               \n",
       "10                1.543797    1.477789    1.673879    1.860400    1.893914   \n",
       "100               2.464945    2.890661    2.866258    2.152636    2.540259   \n",
       "1000              7.867101    7.755140    7.381221    7.871384    8.104229   \n",
       "10000             3.438438    5.077843    3.473742    4.000868    3.532898   \n",
       "100009676         1.891133    1.461110    1.518252    1.742045    1.502510   \n",
       "\n",
       "                GSM2233524  GSM2233525  GSM2233526  GSM2233527  GSM2233528  \\\n",
       "ENTREZ_GENE_ID                                                               \n",
       "10                1.547843    2.020133    1.720264    1.914527    1.428967   \n",
       "100               3.479115    2.432803    2.619858    2.721902    2.636918   \n",
       "1000              7.715304    7.842744    7.803582    7.888642    7.596009   \n",
       "10000             3.283049    3.199576    3.392803    3.506436    3.465728   \n",
       "100009676         2.106307    1.589607    1.724612    1.727502    1.900150   \n",
       "\n",
       "                   ...      GSM2235513  GSM2235514  GSM2235515  GSM2235516  \\\n",
       "ENTREZ_GENE_ID     ...                                                       \n",
       "10                 ...             NaN         NaN         NaN         NaN   \n",
       "100                ...             NaN         NaN         NaN         NaN   \n",
       "1000               ...             NaN         NaN         NaN         NaN   \n",
       "10000              ...        3.407337    3.057845    3.551977    4.088258   \n",
       "100009676          ...        2.385480    2.037207    2.299614    2.543034   \n",
       "\n",
       "                GSM2235517  GSM2235518  GSM2235519  GSM2235520  GSM2235521  \\\n",
       "ENTREZ_GENE_ID                                                               \n",
       "10                     NaN         NaN         NaN         NaN         NaN   \n",
       "100                    NaN         NaN         NaN         NaN         NaN   \n",
       "1000                   NaN         NaN         NaN         NaN         NaN   \n",
       "10000             3.490249    3.524224    3.809056    3.433827    3.650891   \n",
       "100009676         2.728000    2.540135    2.590416    2.470051    2.605727   \n",
       "\n",
       "                GSM2235522  \n",
       "ENTREZ_GENE_ID              \n",
       "10                     NaN  \n",
       "100                    NaN  \n",
       "1000                   NaN  \n",
       "10000             3.679745  \n",
       "100009676         2.574401  \n",
       "\n",
       "[5 rows x 2004 columns]"
      ]
     },
     "execution_count": 28,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "AD_sample_annotated.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 29,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "(17284, 2004)"
      ]
     },
     "execution_count": 29,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "AD_sample_annotated.shape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 30,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "AD_sample_annotated.fillna(1, inplace=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 31,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "AD_sample_annotated.to_csv('AD_data_GEO.csv')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 38,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "AD_label = gse.phenotype_data[[\"title\", \"source_name_ch1\" , \"characteristics_ch1.8.neuropathological category\", \"characteristics_ch1.3.race\", \"characteristics_ch1.11.sum of neurofibrillary tangles density in multiple brain regions\", \"characteristics_ch1.10.sum of cerad rating scores in multiple brain regions\"]]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 39,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "AD_label.to_csv('AD_data_label.csv')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 40,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "(2004, 6)"
      ]
     },
     "execution_count": 40,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "AD_label.shape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 36,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "(17284, 2004)"
      ]
     },
     "execution_count": 36,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "AD_sample_annotated.shape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  }
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