TranslateCirc error

[UNSWGiiGii]

Hi, I'm getting an error when running TranslateCirc

ILLUMINACLIP: Using 0 prefix pairs, 138 forward/reverse sequences, 0 forward only sequences, 0 reverse only sequences
Input Reads: 93462704 Surviving: 92983770 (99.49%) Dropped: 478934 (0.51%)
TrimmomaticSE: Completed successfully
sh: bowtie: command not found
sh: bowtie: command not found
sh: STAR: command not found
Error in system("rm -rf", tmp) : 'intern' must be TRUE or FALSE
In addition: Warning messages:
1: In system(gindex_command) : error in running command
2: In system(index_command) : error in running command
3: In system(rindex_command) : error in running command
4: In system(remove_command) : error in running command
5: In system(remove_liner_command) : error in running command
6: In system(map_command) : error in running command

In my modules loaded,
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")

BiocManager::install("GenomicAlignments", force = TRUE)

install.packages('Biostrings')
BiocManager::install('GenomicAlignments')
BiocManager::install('GenomicFeatures')
BiocManager::install('GenomicRanges', force = TRUE)
install.packages('RColorBrewer')
install.packages('circlize')
install.packages('dplyr')
install.packages('ggplot2')
install.packages('grid')
install.packages('gtable')
install.packages('stringr')
BiocManager::install('Rbowtie2', force = TRUE)

install.packages('usethis', force = TRUE)
install.packages('devtools')
library(devtools)
library(Rbowtie2)

install Rcirc

install_github('PSSUN/Rcirc')
library(Rcirc)

I'm following the manual from https://rcirc-doc.readthedocs.io/en/latest/Usage/Usage.html