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sessionInfo.txt
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R version 4.2.0 (2022-04-22 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19044)
Matrix products: default
locale:
[1] LC_COLLATE=English_Denmark.utf8 LC_CTYPE=English_Denmark.utf8 LC_MONETARY=English_Denmark.utf8
[4] LC_NUMERIC=C LC_TIME=English_Denmark.utf8
attached base packages:
[1] parallel splines stats4 grid stats graphics grDevices utils datasets methods base
other attached packages:
[1] RVAideMemoire_0.9-83 indicspecies_1.7.13 pals_1.7 ggalluvial_0.12.5
[5] shinydashboard_0.7.2 shiny_1.7.2 ANCOMBC_1.6.2 plot3D_1.4
[9] dartR_2.7.2 dartR.data_1.0.2 adegenet_2.1.8 ade4_1.7-19
[13] Publish_2020.12.23 remotes_2.4.2 labdsv_2.0-1 SIAMCAT_2.0.0
[17] mlr3_0.13.4 riskRegression_2022.03.22 pec_2022.05.04 cmprsk_2.2-11
[21] mets_1.2.9 lava_1.6.10 timereg_2.0.2 prodlim_2019.11.13
[25] randomcoloR_1.1.0.1 autoimage_2.2.3 plotrix_3.8-2 reghelper_1.1.1
[29] openxlsx_4.2.5 readxl_1.4.0 pracma_2.3.8 foreign_0.8-82
[33] haven_2.5.0 gtools_3.9.3 GPArotation_2022.4-1 arules_1.7-3
[37] pastecs_1.3.21 car_3.1-1 carData_3.0-5 psych_2.2.5
[41] ltm_1.2-0 polycor_0.8-1 msm_1.6.9 pROC_1.18.0
[45] rms_6.3-0 SparseM_1.81 Hmisc_4.7-1 Formula_1.2-4
[49] ROCR_1.0-11 umap_0.2.8.0 corrplot_0.92 ggfortify_0.4.14
[53] FactoMineR_2.4 factoextra_1.0.7 glmnet_4.1-4 cluster_2.1.4
[57] digest_0.6.29 circlize_0.4.15 igraph_1.3.2 xtable_1.8-4
[61] OTUtable_1.1.2 iNEXT_2.0.20 meta_5.5-0 mgcv_1.8-40
[65] lmerTest_3.1-3 lme4_1.1-30 Matrix_1.4-1 gdata_2.18.0.1
[69] metamicrobiomeR_1.2 gamlss_5.4-3 gamlss.dist_6.0-3 gamlss.data_6.0-2
[73] knitr_1.40 patchwork_1.1.1 propr_4.2.6 zCompositions_1.4.0-1
[77] truncnorm_1.0-8 NADA_1.6-1.1 survival_3.3-1 MASS_7.3-58.1
[81] ggsignif_0.6.3 devtools_2.4.3 usethis_2.1.6 data.table_1.14.2
[85] viridisLite_0.4.0 scales_1.2.0 compositions_2.0-4 nlme_3.1-157
[89] DESeq2_1.36.0 SummarizedExperiment_1.26.1 Biobase_2.56.0 MatrixGenerics_1.8.1
[93] matrixStats_0.62.0 GenomicRanges_1.48.0 GenomeInfoDb_1.32.2 IRanges_2.30.0
[97] S4Vectors_0.34.0 BiocGenerics_0.42.0 pheatmap_1.0.12 gplots_3.1.3
[101] forcats_0.5.1 stringr_1.4.0 dplyr_1.0.9 purrr_0.3.4
[105] readr_2.1.2 tidyr_1.2.0 tibble_3.1.7 tidyverse_1.3.2
[109] gridExtra_2.3 RColorBrewer_1.1-3 reshape2_1.4.4 plotly_4.10.0
[113] ggpubr_0.4.0 ggthemes_4.2.4 ggsci_2.9 ggrepel_0.9.1
[117] ggplot2_3.3.6 vegan_2.6-2 lattice_0.20-45 permute_0.9-7
[121] phyloseq_1.40.0
loaded via a namespace (and not attached):
[1] terra_1.6-17 tcltk_4.2.0 vctrs_0.4.1 expm_0.999-6 V8_4.2.0
[6] beanplot_1.3.1 mmod_1.3.3 blob_1.2.3 later_1.3.0 nloptr_2.0.3
[11] DBI_1.1.3 R.utils_2.12.0 gdsfmt_1.34.0 jpeg_0.1-9 zlibbioc_1.42.0
[16] MatrixModels_0.5-0 htmlwidgets_1.5.4 mvtnorm_1.1-3 GlobalOptions_0.1.2 future_1.26.1
[21] leaps_3.1 misc3d_0.9-1 DEoptimR_1.0-11 Rcpp_1.0.9 KernSmooth_2.23-20
[26] DT_0.26 promises_1.2.0.1 DelayedArray_0.22.0 pkgload_1.3.0 RSpectra_0.16-1
[31] fs_1.5.2 mnormt_2.1.0 png_0.1-7 polspline_1.1.20 pkgconfig_2.0.3
[36] gridBase_0.4-7 StAMPP_1.6.3 iterators_1.0.14 minqa_1.2.4 lgr_0.4.3
[41] reticulate_1.25 spam_2.9-0 xfun_0.31 zoo_1.8-10 tidyselect_1.2.0
[46] bbotk_0.5.3 pkgbuild_1.3.1 rlang_1.0.6 glue_1.6.2 palmerpenguins_0.1.0
[51] modelr_0.1.8 fields_14.0 labeling_0.4.2 GGally_2.1.2 httpuv_1.6.6
[56] class_7.3-20 biomformat_1.24.0 TH.data_1.1-1 annotate_1.74.0 jsonlite_1.8.0
[61] XVector_0.36.0 bit_4.0.4 mime_0.12 Exact_3.1 stringi_1.7.8
[66] processx_3.7.0 gsl_2.1-7.1 rbibutils_2.2.8 Rdpack_2.3.1 rgdal_1.5-32
[71] gap_1.3-1 quadprog_1.5-8 bitops_1.0-7 cli_3.3.0 rhdf5filters_1.8.0
[76] maps_3.4.0 RSQLite_2.2.15 mlr3misc_0.10.0 SNPRelate_1.32.1 energy_1.7-10
[81] rstudioapi_0.13 microbiome_1.18.0 locfit_1.5-9.6 gap.datasets_0.0.5 listenv_0.8.0
[86] pegas_1.1 LiblineaR_2.10-12 paradox_0.9.0 R.oo_1.25.0 dbplyr_2.2.1
[91] sessioninfo_1.2.2 lifecycle_1.0.3 mlr3learners_0.5.3 munsell_0.5.0 cellranger_1.1.0
[96] R.methodsS3_1.8.2 mapproj_1.2.8 caTools_1.18.2 codetools_0.2-18 htmlTable_2.4.1
[101] admisc_0.29 flashClust_1.01-2 googlesheets4_1.0.0 directlabels_2021.1.13 scatterplot3d_0.3-41
[106] abind_1.4-5 farver_2.1.1 parallelly_1.32.0 askpass_1.1 CompQuadForm_1.4.3
[111] PopGenReport_3.0.7 dichromat_2.0-0.1 genetics_1.3.8.1.3 seqinr_4.2-23 future.apply_1.9.0
[116] ellipsis_0.3.2 prettyunits_1.1.1 lubridate_1.8.0 googledrive_2.0.0 reprex_2.0.1
[121] multtest_2.52.0 gdistance_1.6 gargle_1.2.0 htmltools_0.5.2 utf8_1.2.2
[126] XML_3.99-0.10 e1071_1.7-11 withr_2.5.0 BiocParallel_1.30.3 bit64_4.0.5
[131] rngtools_1.5.2 doRNG_1.8.2 rootSolve_1.8.2.3 infotheo_1.2.0.1 multcomp_1.4-20
[136] foreach_1.5.2 robustbase_0.95-0 Biostrings_2.64.0 combinat_0.0-8 raster_3.6-3
[141] memoise_2.0.1 geneplotter_1.74.0 tzdb_0.3.0 callr_3.7.1 lmom_2.9
[146] ps_1.7.1 curl_4.3.2 metafor_3.4-0 fansi_1.0.3 checkmate_2.1.0
[151] cachem_1.0.6 mlr3tuning_0.13.1 interp_1.1-2 deldir_1.0-6 tensorA_0.36.2
[156] rstatix_0.7.0 tools_4.2.0 sandwich_3.0-2 magrittr_2.0.3 proxy_0.4-27
[161] RCurl_1.98-1.7 ape_5.6-2 bayesm_3.1-4 xml2_1.3.3 httr_1.4.3
[166] assertthat_0.2.1 boot_1.3-28 globals_0.15.1 metadat_1.2-0 R6_2.5.1
[171] Rhdf5lib_1.18.2 nnet_7.3-18 progress_1.2.2 genefilter_1.78.0 KEGGREST_1.36.3
[176] shape_1.4.6 rhdf5_2.40.0 colorspace_2.0-3 generics_0.1.3 base64enc_0.1-3
[181] pillar_1.8.0 sp_1.5-0 calibrate_1.7.7 uuid_1.1-0 GenomeInfoDbData_1.2.8
[186] plyr_1.8.7 dotCall64_1.0-1 gtable_0.3.0 rvest_1.0.2 zip_2.2.0
[191] RgoogleMaps_1.4.5.3 latticeExtra_0.6-30 fastmap_1.1.0 doParallel_1.0.17 PRROC_1.3.1
[196] quantreg_5.93 AnnotationDbi_1.58.0 broom_1.0.0 openssl_2.0.2 backports_1.4.1
[201] gld_2.6.5 hms_1.1.1 Rtsne_0.16 dismo_1.3-9 numDeriv_2016.8-1.1
[206] mathjaxr_1.6-0 DescTools_0.99.45 lazyeval_0.2.2 crayon_1.5.1 viridis_0.6.2
[211] reshape_0.8.9 rpart_4.1.16 compiler_4.2.0