From 18321827edddb5d7b1b63c70e2a3f9b6f9b38bff Mon Sep 17 00:00:00 2001 From: chuan-wang Date: Thu, 17 Jun 2021 20:07:16 +0200 Subject: [PATCH] Support addtional 10X index types --- VERSIONLOG.md | 3 +++ taca/illumina/HiSeqX_Runs.py | 2 +- 2 files changed, 4 insertions(+), 1 deletion(-) diff --git a/VERSIONLOG.md b/VERSIONLOG.md index cf6c6f1a..b3ec3686 100644 --- a/VERSIONLOG.md +++ b/VERSIONLOG.md @@ -1,5 +1,8 @@ # TACA Version Log +## 20210617.1 +Support addtional 10X index types + ## 20210604.1 Handle special case with index 2 only diff --git a/taca/illumina/HiSeqX_Runs.py b/taca/illumina/HiSeqX_Runs.py index 9cb37bda..521ea60a 100755 --- a/taca/illumina/HiSeqX_Runs.py +++ b/taca/illumina/HiSeqX_Runs.py @@ -13,7 +13,7 @@ TENX_GENO_PAT = re.compile('SI-GA-[A-H][1-9][0-2]?') TENX_ATAC_PAT = re.compile('SI-NA-[A-H][1-9][0-2]?') -TENX_ST_PAT = re.compile('SI-(?:TT|NT|NN)-[A-H][1-9][0-2]?') +TENX_ST_PAT = re.compile('SI-(?:TT|NT|NN|TN)-[A-H][1-9][0-2]?') SMARTSEQ_PAT = re.compile('SMARTSEQ[1-9]?-[1-9][0-9]?[A-P]') IDT_UMI_PAT = re.compile('([ATCG]{4,}N+$)')