From cb4a0acb242248846e2e5456c344e7a1b502d7ad Mon Sep 17 00:00:00 2001
From: kedhammar <alfred.kedhammar@scilifelab.se>
Date: Mon, 17 Jun 2024 15:39:28 +0200
Subject: [PATCH 1/2] fix mypy inclusivity

---
 .github/workflows/lint-code.yml | 2 +-
 VERSIONLOG.md                   | 4 ++++
 2 files changed, 5 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/lint-code.yml b/.github/workflows/lint-code.yml
index 0d67ba8b..55830a96 100644
--- a/.github/workflows/lint-code.yml
+++ b/.github/workflows/lint-code.yml
@@ -56,7 +56,7 @@ jobs:
         run: echo -e "y" | mypy --install-types **/*.py || exit 0
       - name: mypy --> Static type checking
         # Configured in pyprojet.toml
-        run: mypy **/*.py
+        run: mypy .
 
   # Use pipreqs to check for missing dependencies
   pipreqs-check:
diff --git a/VERSIONLOG.md b/VERSIONLOG.md
index 066a8bd3..c83129a9 100644
--- a/VERSIONLOG.md
+++ b/VERSIONLOG.md
@@ -1,5 +1,9 @@
 # TACA Version Log
 
+## 20240617.1
+
+Run mypy for entire repo regardless of depth.
+
 ## 20240527.1
 
 Use run-specific name to find Anglerfish samplesheet.

From d203a097fb0b1ada19c2981c3ed9cf3c1c6168bf Mon Sep 17 00:00:00 2001
From: kedhammar <alfred.kedhammar@scilifelab.se>
Date: Mon, 17 Jun 2024 15:42:16 +0200
Subject: [PATCH 2/2] propagate change to stubs install

---
 .github/workflows/lint-code.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/lint-code.yml b/.github/workflows/lint-code.yml
index 55830a96..d67c2eae 100644
--- a/.github/workflows/lint-code.yml
+++ b/.github/workflows/lint-code.yml
@@ -53,7 +53,7 @@ jobs:
           pip install mypy
       # Start by installing type stubs
       - name: mypy --> Install stubs
-        run: echo -e "y" | mypy --install-types **/*.py || exit 0
+        run: echo -e "y" | mypy --install-types . || exit 0
       - name: mypy --> Static type checking
         # Configured in pyprojet.toml
         run: mypy .