Initial implementation.

Author: CristianoLira

pom.xml

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+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+	<groupId>ImageJ</groupId>
+	<artifactId>ImageJ</artifactId>
+	<version>0.0.1-SNAPSHOT</version>
+	<build>
+		<plugins>
+			<plugin>
+				<artifactId>maven-compiler-plugin</artifactId>
+				<version>3.5.1</version>
+				<configuration>
+					<source>1.8</source>
+					<target>1.8</target>
+				</configuration>
+			</plugin>
+		</plugins>
+	</build>
+	<parent>
+		<groupId>org.scijava</groupId>
+		<artifactId>pom-scijava</artifactId>
+		<version>14.0.0</version>
+	</parent>
+
+	<repositories>
+		<!-- NB: for project parent -->
+		<repository>
+			<id>imagej.public</id>
+			<url>http://maven.imagej.net/content/groups/public</url>
+		</repository>
+	</repositories>
+
+	<dependencies>
+		<dependency>
+			<groupId>net.imagej</groupId>
+			<artifactId>imagej</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.mongodb</groupId>
+			<artifactId>mongo-java-driver</artifactId>
+			<version>3.4.2</version>
+		</dependency>
+		<dependency>
+			<groupId>net.imagej</groupId>
+			<artifactId>imagej-plugins-commands</artifactId>
+		</dependency>
+	</dependencies>
+</project>

src/main/java/ic/ufal/br/PDI/Main.java

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+package ic.ufal.br.PDI;
+
+import java.io.File;
+import java.io.IOException;
+import java.io.PrintWriter;
+import java.util.HashMap;
+import java.util.Map;
+
+import org.scijava.module.ModuleInfo;
+
+import net.imagej.Dataset;
+import net.imagej.ImageJ;
+import net.imglib2.IterableInterval;
+import net.imglib2.type.numeric.real.DoubleType;
+import net.imagej.plugins.commands.typechange.TypeChanger;
+
+public class Main {
+
+	public static void main(String[] args) throws IOException {
+		ImageJ ij = new ImageJ();
+		ModuleInfo module = ij.command().getCommand(TypeChanger.class);
+		
+		File file = ij.ui().chooseFile(null, "Open");
+		String fileName = file.getName();
+		
+		PrintWriter pw = new PrintWriter(new File("test.csv"));
+		StringBuilder sb = new StringBuilder();
+		sb.append("magnitude");
+		sb.append(",");
+		sb.append("label");
+		sb.append("\n");
+		
+		Dataset dataset = ij.scifio().datasetIO().open(file.getPath());
+		ij.ui().show(dataset);
+		Map<String, Object> input = new HashMap<String, Object>();
+		input.put("data", dataset);
+		input.put("typeName", "8-bit unsigned integer");
+		input.put("combineChannels", true);
+		ij.module().waitFor(ij.module().run(module, true, input));
+		
+		// ij.op().haralick, ij.op().zernike, ij.op().tamura, ij.op().stats estes são os descritores que possuem
+		// os atributos
+		DoubleType value = ij.op().zernike().magnitude((IterableInterval<DoubleType>)dataset.getImgPlus(), 0,0);
+		sb.append(value);
+		sb.append(",");
+		// maligno ou benigno
+		sb.append(fileName.substring(fileName.lastIndexOf(".") - 1, fileName.lastIndexOf(".")));
+		sb.append("\n");
+		
+		pw.write(sb.toString());
+        pw.close();
+		System.out.println(value);
+	}
+}