diff --git a/adios_db/adios_db/__init__.py b/adios_db/adios_db/__init__.py index e741cdea..f418d09c 100644 --- a/adios_db/adios_db/__init__.py +++ b/adios_db/adios_db/__init__.py @@ -2,7 +2,7 @@ from logging import (basicConfig, getLogger, NullHandler, DEBUG, INFO, WARNING, ERROR, CRITICAL) -__version__ = "1.0.0.b1" +__version__ = "1.0.1" def initialize_console_log(level='debug'): diff --git a/adios_db/adios_db/data_sources/noaa_csv/reader.py b/adios_db/adios_db/data_sources/noaa_csv/reader.py index b97ded12..8ca2d132 100644 --- a/adios_db/adios_db/data_sources/noaa_csv/reader.py +++ b/adios_db/adios_db/data_sources/noaa_csv/reader.py @@ -34,7 +34,7 @@ def load_from_csv(self, infile): "ADIOS CSV file?\n" f"First line of file: {header}") - if data_model_version != ADIOS_DATA_MODEL_VERSION: + if data_model_version > ADIOS_DATA_MODEL_VERSION: raise ValueError("Version mismatch -- this file is: " f"{data_model_version}\n" "The code version is: " diff --git a/adios_db/adios_db/models/common/measurement.py b/adios_db/adios_db/models/common/measurement.py index 33640e07..1cb70862 100644 --- a/adios_db/adios_db/models/common/measurement.py +++ b/adios_db/adios_db/models/common/measurement.py @@ -14,7 +14,9 @@ from dataclasses import dataclass from math import isclose import copy +import warnings +import nucos from nucos import convert from ..common.utilities import dataclass_to_json @@ -124,6 +126,22 @@ def _make_float(value): pass return value + def validate(self): + + if self is None: # how can this happen?!?! -- but it does. + return [] + + msgs = [] + + if hasattr(nucos, 'is_supported_unit'): + if not nucos.is_supported_unit(self.unit_type, self.unit): + valid_units = nucos.get_supported_names(self.unit_type) + msgs.append(ERRORS["E045"].format(self.unit, self.unit_type, valid_units)) + else: + warnings.warn("nucos version >= 3.1.0 required for unit validation") + + return msgs + def py_json(self, sparse=True): """ unit_type is added here, as it's not a settable field @@ -215,9 +233,10 @@ def convert_to(self, new_unit): return self def validate(self): - msgs = [] if self is None: # how can this happen?!?! -- but it does. - return msgs + return [] + + msgs = super().validate() # only do this for C or K if (self.unit is not None) and (self.unit.upper() not in {'C', 'K'}): @@ -279,6 +298,11 @@ class Unitless(MeasurementBase): def convert_to(self, *args, **kwargs): raise TypeError("You can not convert a Unitless measurement") + def validate(self): + if (self is not None) and (self.unit is not None): + return [f"E045: Unitless measurements should have no unit. '{self.unit}' is not valid"] + return [] + class Dimensionless(MeasurementBase): """ @@ -405,6 +429,18 @@ def __eq__(self, other): return self.__dict__ == other.__dict__ + def validate(self): + """ + a kludge -- this should probably create the correct Measurement + when created instead + """ + if self is None: + return [] + if self.unit_type == "unitless": + return Unitless.validate(self) + return super().validate() + + class Density(MeasurementBase): unit_type = "density" @@ -424,6 +460,10 @@ class Pressure(MeasurementBase): class NeedleAdhesion(MeasurementBase): unit_type = "needleadhesion" + def validate(self): + if (self is not None) and (self.unit.strip().lower() != "g/m^2"): + return [f'E045: Needle Adhesion can only have units of: "g/m^2". "{self.unit}" is not valid'] + return [] class InterfacialTension(MeasurementBase): unit_type = "interfacialtension" @@ -431,3 +471,26 @@ class InterfacialTension(MeasurementBase): class AngularVelocity(MeasurementBase): unit_type = 'angularvelocity' + + +# def set_valid_units(cls): +# """ +# sets the valid units for a Measurement class + +# done by querying nucos +# """ +# print("setting units on:", cls) + +# cls.valid_units = nucos.get_all_valid_unit_names(cls.unit_type) + +# print("valid units are:", cls.valid_units) + + +# for name, obj in dict(vars()).items(): +# try: +# if issubclass(obj, MeasurementBase): +# print(name, "is a Measurement, with unit type:", obj.unit_type) +# set_valid_units(obj) +# except TypeError: +# pass + diff --git a/adios_db/adios_db/models/oil/oil.py b/adios_db/adios_db/models/oil/oil.py index 6f5ea6fe..aaaa51a5 100644 --- a/adios_db/adios_db/models/oil/oil.py +++ b/adios_db/adios_db/models/oil/oil.py @@ -22,7 +22,7 @@ from .version import Version from .review_status import ReviewStatus -ADIOS_DATA_MODEL_VERSION = Version(0, 11, 0) +ADIOS_DATA_MODEL_VERSION = Version(0, 12, 0) from .version_update import update_json # noqa: E402 diff --git a/adios_db/adios_db/models/oil/physical_properties.py b/adios_db/adios_db/models/oil/physical_properties.py index 72e90b99..1ba74a24 100644 --- a/adios_db/adios_db/models/oil/physical_properties.py +++ b/adios_db/adios_db/models/oil/physical_properties.py @@ -34,7 +34,8 @@ def validate(self): """ points_list = self data_str = self.__class__.__name__ - msgs = [] + msgs = super().validate() + # check for odd temperatures for pt in points_list: diff --git a/adios_db/adios_db/models/oil/properties.py b/adios_db/adios_db/models/oil/properties.py index 7d2d616b..62abc9b8 100644 --- a/adios_db/adios_db/models/oil/properties.py +++ b/adios_db/adios_db/models/oil/properties.py @@ -15,7 +15,7 @@ InterfacialTension, Pressure, AngularVelocity) - +from .physical_properties import DynamicViscosityList, KinematicViscosityList from ..common.validators import EnumValidator from .validation.errors import ERRORS @@ -71,6 +71,9 @@ class Emulsion: complex_viscosity: DynamicViscosity = None + kinematic_viscosities: KinematicViscosityList = field(default_factory=KinematicViscosityList) + dynamic_viscosities: DynamicViscosityList = field(default_factory=DynamicViscosityList) + method: str = None visual_stability: str = None diff --git a/adios_db/adios_db/models/oil/validation/errors.py b/adios_db/adios_db/models/oil/validation/errors.py index 99dbf54b..668f6fe3 100644 --- a/adios_db/adios_db/models/oil/validation/errors.py +++ b/adios_db/adios_db/models/oil/validation/errors.py @@ -16,8 +16,8 @@ "E041": "Value for {}: {} must be between 0 and 1", "E042": "Must have a value for {}", "E043": "API, {} does not match density at 60F. API should be: {:.1f}", - "E044": "Value: {} for {} is not valid", - + "E044": "Value: '{}' for '{}' is not valid", + "E045": "Unit: '{}' is not a valid unit for unit type: '{}'. Options are: {}", # E05* -- duplicates, etc "E050": "Duplicate {} in {}", diff --git a/adios_db/adios_db/models/oil/version_update.py b/adios_db/adios_db/models/oil/version_update.py index abecad0a..f567b1e4 100644 --- a/adios_db/adios_db/models/oil/version_update.py +++ b/adios_db/adios_db/models/oil/version_update.py @@ -20,14 +20,16 @@ def __call__(self, py_json): elif this_ver != self.ver_from: # can't update this return py_json else: # we can do the update - return self.update(py_json) - - -class update_0_10_0_to_0_10_0(Updater): - ver_from = Version(0, 10, 0) - ver_to = Version(0, 11, 0) + self._version_check(py_json) + py_json = self.update(py_json) + py_json['adios_data_model_version'] = str(self.ver_to) + return py_json def update(self, py_json): + # do-nothing updater for only additions. + return py_json + + def _version_check(self, py_json): # just in case this_ver = Version(py_json.get('adios_data_model_version')) @@ -36,6 +38,13 @@ def update(self, py_json): f"JSON version: {this_ver}, this updater " f"can update: {self.ver_from}") + +class update_0_10_0_to_0_11_0(Updater): + ver_from = Version(0, 10, 0) + ver_to = Version(0, 11, 0) + + def update(self, py_json): +# self._version_check(py_json) # change the name of the fraction_weathered attribute if 'sub_samples' in py_json: # very sparse records may not for ss in py_json['sub_samples']: @@ -46,15 +55,23 @@ def update(self, py_json): md['fraction_evaporated'] = md.get('fraction_weathered') md.pop('fraction_weathered', None) - py_json['adios_data_model_version'] = str(self.ver_to) - + # py_json['adios_data_model_version'] = str(self.ver_to) return py_json +class update_0_11_0_to_0_12_0(Updater): + """ + an updater for only additions + -- nothing to be done other than update the version + """ + ver_from = Version(0, 11, 0) + ver_to = Version(0, 12, 0) -# NOTE: updaters need to be in order -# not hard when there is only one :-) -UPDATERS = [update_0_10_0_to_0_10_0()] +# NOTE: updaters need to be in order +# this could be automated it if gets unwieldy +UPDATERS = [update_0_10_0_to_0_11_0(), + update_0_11_0_to_0_12_0(), + ] def update_json(py_json): """ diff --git a/adios_db/adios_db/test/data_for_testing/example_data/ExampleFullRecord.json b/adios_db/adios_db/test/data_for_testing/example_data/ExampleFullRecord.json index 2f901228..27f628ab 100644 --- a/adios_db/adios_db/test/data_for_testing/example_data/ExampleFullRecord.json +++ b/adios_db/adios_db/test/data_for_testing/example_data/ExampleFullRecord.json @@ -1,6 +1,6 @@ { "oil_id": "EC02234", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "Access West Blend Winter", "source_id": "2234", diff --git a/adios_db/adios_db/test/data_for_testing/example_data/ExampleSparseRecord.json b/adios_db/adios_db/test/data_for_testing/example_data/ExampleSparseRecord.json index 759f63de..0cda723e 100644 --- a/adios_db/adios_db/test/data_for_testing/example_data/ExampleSparseRecord.json +++ b/adios_db/adios_db/test/data_for_testing/example_data/ExampleSparseRecord.json @@ -1,114 +1,113 @@ { - "oil_id": "AD02390", - "adios_data_model_version": "0.11.0", - "metadata": { - "name": "WEST SAK (1999)", - "source_id": "AD02390", - "alternate_names": [ - "Alaska North Slope", - "ANS", - "Kuparuk" - ], - "location": "ALASKA", - "reference": { - "year": 1999, - "reference": "Jokuty, P., Whiticar, S., Wang, Z., Fingas, M., Fieldhouse, B., Lambert, P., Mullen, J. 1999. Properties of Crude Oils and Oil Products. Manuscript Report EE-165, Environmental Protection Service, Environment Canada, Ottawa, Ontario." + "oil_id": "AD02390", + "adios_data_model_version": "0.12.0", + "metadata": { + "name": "WEST SAK (1999)", + "source_id": "AD02390", + "alternate_names": [ + "ANS", + "Alaska North Slope", + "Kuparuk" + ], + "location": "ALASKA", + "reference": { + "year": 1999, + "reference": "Jokuty, P., Whiticar, S., Wang, Z., Fingas, M., Fieldhouse, B., Lambert, P., Mullen, J. 1999. Properties of Crude Oils and Oil Products. Manuscript Report EE-165, Environmental Protection Service, Environment Canada, Ottawa, Ontario." + }, + "product_type": "Crude Oil NOS", + "API": 22.4, + "comments": "The data in this record may have been compiled from multiple sources and reflect samples of varying age and composition.", + "labels": [ + "Crude Oil", + "Medium Crude" + ], + "model_completeness": 15, + "gnome_suitable": true }, - "product_type": "Crude Oil NOS", - "API": 22.4, - "comments": "The data in this record may have been compiled from multiple sources and reflect samples of varying age and composition.", - "labels": [ - "Medium Crude", - "Crude Oil" - ], - "model_completeness": 15, - "gnome_suitable": true - }, - "status": [], - "review_status": { - "status": "Not Reviewed" - }, - "sub_samples": [ - { - "metadata": { - "name": "Fresh Oil Sample", - "short_name": "Fresh Oil", - "fraction_evaporated": { - "value": 0, - "unit": "fraction", - "unit_type": "massfraction" - } - }, - "physical_properties": { - "densities": [ - { - "density": { - "value": 918.63, - "unit": "kg/m^3", - "unit_type": "density" + "sub_samples": [ + { + "metadata": { + "name": "Fresh Oil Sample", + "short_name": "Fresh Oil", + "fraction_evaporated": { + "value": 0.0, + "unit": "fraction", + "unit_type": "massfraction" + } }, - "ref_temp": { - "value": 288.16, - "unit": "K", - "unit_type": "temperature" + "physical_properties": { + "densities": [ + { + "density": { + "value": 918.63, + "unit": "kg/m^3", + "unit_type": "density" + }, + "ref_temp": { + "value": 288.16, + "unit": "K", + "unit_type": "temperature" + }, + "method": "Converted from API" + } + ], + "kinematic_viscosities": [ + { + "viscosity": { + "value": 9.6e-05, + "unit": "m^2/s", + "unit_type": "kinematicviscosity" + }, + "ref_temp": { + "value": 16.0, + "unit": "C", + "unit_type": "temperature" + } + } + ] }, - "method": "Converted from API" - } - ], - "kinematic_viscosities": [ - { - "viscosity": { - "value": 0.000096, - "unit": "m^2/s", - "unit_type": "kinematicviscosity" + "distillation_data": { + "type": "mass fraction" }, - "ref_temp": { - "value": 16, - "unit": "C", - "unit_type": "temperature" - } - } - ] - }, - "distillation_data": { - "type": "mass fraction" - }, - "bulk_composition": [ - { - "name": "sulfur", - "measurement": { - "value": 0.0182, - "unit": "fraction", - "unit_type": "massfraction" - } - }, - { - "name": "nickel", - "measurement": { - "value": 22, - "unit": "ppm", - "unit_type": "massfraction" - } - }, - { - "name": "vanadium", - "measurement": { - "value": 61, - "unit": "ppm", - "unit_type": "massfraction" - } - } - ], - "industry_properties": [ - { - "name": "Reid Vapor Pressure", - "measurement": { - "value": 0.19, - "unit": "bar", - "unit_type": "massfraction" - } + "bulk_composition": [ + { + "name": "sulfur", + "measurement": { + "value": 0.0182, + "unit": "fraction", + "unit_type": "massfraction" + } + }, + { + "name": "nickel", + "measurement": { + "value": 22.0, + "unit": "ppm", + "unit_type": "massfraction" + } + }, + { + "name": "vanadium", + "measurement": { + "value": 61.0, + "unit": "ppm", + "unit_type": "massfraction" + } + } + ], + "industry_properties": [ + { + "name": "Reid Vapor Pressure", + "measurement": { + "value": 0.19, + "unit": "bar", + "unit_type": "massfraction" + } + } + ] } - ] + ], + "review_status": { + "status": "Not Reviewed" } - ] } \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/example_data/RecordWithUnitErrors.json b/adios_db/adios_db/test/data_for_testing/example_data/RecordWithUnitErrors.json new file mode 100644 index 00000000..c2e01cb6 --- /dev/null +++ b/adios_db/adios_db/test/data_for_testing/example_data/RecordWithUnitErrors.json @@ -0,0 +1,9837 @@ +{ + "oil_id": "EC02234", + "adios_data_model_version": "0.12.0", + "metadata": { + "name": "Access West Blend Winter", + "source_id": "2234", + "location": "Alberta, Canada", + "reference": { + "year": 2020, + "reference": "Personal communication from Fatemeh Mirnaghi (ESTS), date: April 21, 2020." + }, + "sample_date": "2013-04-08", + "product_type": "Bitumen Blend", + "API": 20.93, + "comments": "Via CanmetEnergy, Natural Resources Canada", + "labels": [ + "Crude Oil", + "Heavy Crude" + ], + "model_completeness": 94, + "change_log": [ + { + "name": "Bozo the Clown", + "date": "2021-04-01", + "comment": "Any random old thing" + } + ] + }, + "sub_samples": [ + { + "metadata": { + "name": "Fresh Oil Sample", + "short_name": "Fresh Oil", + "sample_id": "2234.1.1 A", + "fraction_evaporated": { + "value": 0.0, + "unit": "fraction", + "unit_type": "massfraction" + } + }, + "physical_properties": { + "pour_point": { + "measurement": { + "unit": "Celcius", + "max_value": -25.0, + "unit_type": "temperature" + }, + "method": "ASTM D97" + }, + "flash_point": { + "measurement": { + "unit": "C", + "max_value": -5.0, + "unit_type": "temperature" + }, + "method": "ASTM D7094" + }, + "densities": [ + { + "density": { + "value": 0.93988, + "unit": "g/oz", + "standard_deviation": 0.0003377, + "replicates": 3, + "unit_type": "density" + }, + "ref_temp": { + "value": 0.0, + "unit": "C", + "unit_type": "temperature" + }, + "method": "ASTM D5002" + }, + { + "density": { + "value": 0.92526, + "unit": "g/mL", + "standard_deviation": 0.00050914, + "replicates": 3, + "unit_type": "density" + }, + "ref_temp": { + "value": 15.0, + "unit": "C", + "unit_type": "temperature" + }, + "method": "ASTM D5002" + } + ], + "dynamic_viscosities": [ + { + "viscosity": { + "value": 1300.0, + "unit": "mPa.s", + "standard_deviation": 24.44, + "replicates": 3, + "unit_type": "dynamicviscosity" + }, + "ref_temp": { + "value": 0.0, + "unit": "C", + "unit_type": "temperature" + }, + "method": "ESTS: 12.06/x.x/M" + }, + { + "viscosity": { + "value": 350.0, + "unit": "mPa.s", + "standard_deviation": 8.271, + "replicates": 3, + "unit_type": "dynamicviscosity" + }, + "ref_temp": { + "value": 15.0, + "unit": "C", + "unit_type": "temperature" + }, + "method": "ESTS: 12.06/x.x/M" + } + ], + "interfacial_tension_air": [ + { + "tension": { + "value": 30.197, + "unit": "mN/m", + "standard_deviation": 0.11372, + "replicates": 3, + "unit_type": "interfacialtension" + }, + "ref_temp": { + "value": 15.0, + "unit": "C", + "unit_type": "temperature" + }, + "method": "ESTS: 12.12/x.x/M" + }, + { + "tension": { + "value": 31.147, + "unit": "mN/m", + "standard_deviation": 0.15044, + "replicates": 3, + "unit_type": "interfacialtension" + }, + "ref_temp": { + "value": 0.0, + "unit": "C", + "unit_type": "temperature" + }, + "method": "ESTS: 12.12/x.x/M" + } + ], + "interfacial_tension_water": [ + { + "tension": { + "value": 24.237, + "unit": "mN/m", + "standard_deviation": 0.045092, + "replicates": 3, + "unit_type": "interfacialtension" + }, + "ref_temp": { + "value": 15.0, + "unit": "C", + "unit_type": "temperature" + }, + "method": "ESTS: 12.12/x.x/M" + }, + { + "tension": { + "value": 24.78, + "unit": "mN/m", + "standard_deviation": 0.13454, + "replicates": 3, + "unit_type": "interfacialtension" + }, + "ref_temp": { + "value": 0.0, + "unit": "C", + "unit_type": "temperature" + }, + "method": "ESTS: 12.12/x.x/M" + } + ], + "interfacial_tension_seawater": [ + { + "tension": { + "value": 23.827, + "unit": "mN/m", + "standard_deviation": 0.020817, + "replicates": 3, + "unit_type": "interfacialtension" + }, + "ref_temp": { + "value": 15.0, + "unit": "C", + "unit_type": "temperature" + }, + "method": "ESTS: 12.12/x.x/M" + }, + { + "tension": { + "value": 24.96, + "unit": "mN/m", + "standard_deviation": 0.24637, + "replicates": 3, + "unit_type": "interfacialtension" + }, + "ref_temp": { + "value": 0.0, + "unit": "C", + "unit_type": "temperature" + }, + "method": "ESTS: 12.12/x.x/M" + } + ] + }, + "environmental_behavior": { + "dispersibilities": [ + { + "dispersant": "Corexit 9500", + "effectiveness": { + "value": 10.399, + "unit": "%", + "standard_deviation": 1.8703, + "replicates": 6, + "unit_type": "massfraction" + }, + "method": "Swirling Flask Test (ASTM F2059)" + } + ], + "emulsions": [ + { + "age": { + "value": 0.0, + "unit": "day", + "unit_type": "time" + }, + "water_content": { + "value": 39.787, + "unit": "%", + "standard_deviation": 2.3, + "replicates": 9, + "unit_type": "massfraction" + }, + "ref_temp": { + "value": 15.0, + "unit": "C", + "unit_type": "temperature" + }, + "complex_modulus": { + "value": 45.0, + "unit": "Pa", + "standard_deviation": 7.0, + "replicates": 6, + "unit_type": "pressure" + }, + "storage_modulus": { + "value": 13.823, + "unit": "Pa", + "standard_deviation": 3.0, + "replicates": 6, + "unit_type": "pressure" + }, + "loss_modulus": { + "value": 42.0, + "unit": "Pa", + "standard_deviation": 6.0, + "replicates": 6, + "unit_type": "pressure" + }, + "tan_delta_v_e": { + "value": 3.135, + "standard_deviation": 0.4, + "replicates": 6, + "unit_type": "unitless" + }, + "complex_viscosity": { + "value": 7.0975, + "unit": "Pa.s", + "standard_deviation": 1.0, + "replicates": 6, + "unit_type": "dynamicviscosity" + }, + "method": "ESTS: 13.02/x.x/M", + "visual_stability": "Entrained" + }, + { + "age": { + "value": 7.0, + "unit": "day", + "unit_type": "time" + }, + "water_content": { + "value": 15.592, + "unit": "%", + "standard_deviation": 1.8, + "replicates": 9, + "unit_type": "massfraction" + }, + "ref_temp": { + "value": 15.0, + "unit": "C", + "unit_type": "temperature" + }, + "complex_modulus": { + "value": 31.0, + "unit": "Pa", + "standard_deviation": 7.0, + "replicates": 6, + "unit_type": "pressure" + }, + "storage_modulus": { + "value": 2.4437, + "unit": "Pa", + "standard_deviation": 0.96, + "replicates": 6, + "unit_type": "pressure" + }, + "loss_modulus": { + "value": 31.0, + "unit": "Pa", + "standard_deviation": 6.9, + "replicates": 6, + "unit_type": "pressure" + }, + "tan_delta_v_e": { + "value": 12.0, + "standard_deviation": 2.0, + "replicates": 5, + "unit_type": "unitless" + }, + "complex_viscosity": { + "value": 4.9798, + "unit": "Pa.s", + "standard_deviation": 1.1, + "replicates": 6, + "unit_type": "dynamicviscosity" + }, + "method": "ESTS: 13.02/x.x/M" + } + ], + "ests_evaporation_test": { + "a_for_ev_a_b_ln_t": 1.72, + "b_for_ev_a_b_ln_t": 0.045, + "method": "ESTS: 13.01/x.x/M" + } + }, + "SARA": { + "method": "ESTS: 12.11/1.0/M", + "saturates": { + "value": 38.0, + "unit": "%", + "unit_type": "massfraction" + }, + "aromatics": { + "value": 31.0, + "unit": "%", + "unit_type": "massfraction" + }, + "resins": { + "value": 16.0, + "unit": "%", + "unit_type": "massfraction" + }, + "asphaltenes": { + "value": 15.0, + "unit": "%", + "unit_type": "massfraction" + } + }, + "distillation_data": { + "type": "mass fraction", + "method": "ASTM D7169", + "end_point": { + "value": 522.0, + "unit": "C", + "unit_type": "temperature" + }, + "fraction_recovered": { + "value": 1.0, + "unit": "fraction", + "unit_type": "concentration" + }, + "cuts": [ + { + "fraction": { + "value": 5.0, + "unit": "%", + "unit_type": "concentration" + }, 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"measurement": { + "value": 234.6, + "unit": "\u00b5g/g", + "unit_type": "massfraction" + } + }, + { + "name": "14\u00df(H),17\u00df(H)-20-Methylcholestane (C28\u03b1\u00df\u00df)", + "groups": [ + "Biomarkers" + ], + "method": "ESTS: 5.03/x.x/M", + "measurement": { + "value": 191.25, + "unit": "\u00b5g/g", + "unit_type": "massfraction" + } + }, + { + "name": "14\u00df(H),17\u00df(H)-20-Ethylcholestane (C29\u03b1\u00df\u00df)", + "groups": [ + "Biomarkers" + ], + "method": "ESTS: 5.03/x.x/M", + "measurement": { + "value": 304.77, + "unit": "\u00b5g/g", + "unit_type": "massfraction" + } + } + ], + "bulk_composition": [ + { + "name": "Wax Content", + "method": "ESTS: 12.11/2.0/M", + "measurement": { + "value": 2.1, + "unit": "%", + "unit_type": "massfraction" + } + }, + { + "name": "Water Content", + "method": "ASTM E203", + "measurement": { + "unit": "%", + "max_value": 0.1, + "replicates": 3, + "unit_type": "massfraction" + } + }, + { + "name": "Sulfur Content", + "method": "ASTM D4294", + "measurement": { + "value": 4.8, + "unit": "%", + "unit_type": "massfraction" + } + }, + { + "name": "GC-TPH", + "method": "ESTS: 5.03/x.x/M", + "measurement": { + "value": 300.86, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "GC-TSH", + "method": "ESTS: 5.03/x.x/M", + "measurement": { + "value": 149.56, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "GC-TAH", + "method": "ESTS: 5.03/x.x/M", + "measurement": { + "value": 151.3, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "GC-TSH/GC-TPH", + "groups": [ + "Hydrocarbon Content Ratio" + ], + "method": "ESTS: 5.03/x.x/M", + "measurement": { + "value": 49.706, + "unit": "%", + "unit_type": "massfraction" + } + }, + { + "name": "GC-TAH/GC-TPH", + "groups": [ + "Hydrocarbon Content Ratio" + ], + "method": "ESTS: 5.03/x.x/M", + "measurement": { + "value": 50.294, + "unit": "%", + "unit_type": "massfraction" + } + }, + { + "name": "Resolved Peaks/TPH", + "groups": [ + "Hydrocarbon Content Ratio" + ], + "method": "ESTS: 5.03/x.x/M", + "measurement": { + "value": 6.1306, + "unit": "%", + "unit_type": "massfraction" + } + } + ], + "CCME": { + "F1": { + "value": 1.5985, + "unit": "mg/g", + "unit_type": "massfraction" + }, + "F2": { + "value": 14.829, + "unit": "mg/g", + "unit_type": "massfraction" + }, + "F3": { + "value": 248.2, + "unit": "mg/g", + "unit_type": "massfraction" + }, + "F4": { + "value": 36.232, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + "ESTS_hydrocarbon_fractions": { + "method": "Hollebone, Bruce (2020) Personal communication", + "saturates": [ + { + "name": "n-C8 to n-C10", + "measurement": { + "value": 1.73, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C10 to n-C12", + "measurement": { + "value": 0.5, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C12 to n-C16", + "measurement": { + "value": 7.93, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C16 to n-C20", + "measurement": { + "value": 34.77, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C20 to n-C24", + "measurement": { + "value": 29.69, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C24 to n-C28", + "measurement": { + "value": 23.0, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C28 to n-C34", + "measurement": { + "value": 33.36, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C34+", + "measurement": { + "value": 18.57, + "unit": "mg/g", + "unit_type": "massfraction" + } + } + ], + "aromatics": [ + { + "name": "n-C8 to n-C10", + "measurement": { + "value": 1.27, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C10 to n-C12", + "measurement": { + "value": 0.71, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C12 to n-C16", + "measurement": { + "value": 2.9, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C16 to n-C20", + "measurement": { + "value": 19.06, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C20 to n-C24", + "measurement": { + "value": 29.61, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C24 to n-C28", + "measurement": { + "value": 30.68, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C28 to n-C34", + "measurement": { + "value": 42.32, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C34+", + "measurement": { + "value": 24.75, + "unit": "mg/g", + "unit_type": "massfraction" + } + } + ], + "GC_TPH": [ + { + "name": "n-C8 to n-C10", + "measurement": { + "value": 1.88, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C10 to n-C12", + "measurement": { + "value": 1.11, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C12 to n-C16", + "measurement": { + "value": 11.35, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C16 to n-C20", + "measurement": { + "value": 54.53, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C20 to n-C24", + "measurement": { + "value": 60.92, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C24 to n-C28", + "measurement": { + "value": 55.03, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C28 to n-C34", + "measurement": { + "value": 73.02, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "n-C34+", + "measurement": { + "value": 43.01, + "unit": "mg/g", + "unit_type": "massfraction" + } + }, + { + "name": "TOTAL TPH (GC detected TPH + undetected TPH)", + "measurement": { + "value": 460.0, + "unit": "mg/g", + "unit_type": "massfraction" + } + } + ] + } + } + ], + "review_status": { + "status": "Not Reviewed" + } +} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97282.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97282.json deleted file mode 100644 index a9f78158..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97282.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce97282", - "name": "Crude" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97283.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97283.json deleted file mode 100644 index e6bf7bcf..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97283.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce97283", - "name": "Refined" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97284.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97284.json deleted file mode 100644 index 11466c02..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97284.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce97284", - "name": "Condensate" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97285.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97285.json deleted file mode 100644 index 9811f159..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97285.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce97285", - "name": "Light" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97286.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97286.json deleted file mode 100644 index 3e6426e8..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97286.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce97286", - "name": "Medium" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97287.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97287.json deleted file mode 100644 index f7274ab2..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97287.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce97287", - "name": "Intermediate" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97288.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97288.json deleted file mode 100644 index d21efcb4..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97288.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce97288", - "name": "Heavy" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97289.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97289.json deleted file mode 100644 index 100664d3..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97289.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce97289", - "name": "Gasoline" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728a.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728a.json deleted file mode 100644 index 6b145aab..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728a.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce9728a", - "name": "Kerosene" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728b.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728b.json deleted file mode 100644 index 7cb32a16..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728b.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce9728b", - "name": "Fuel Oil" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728c.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728c.json deleted file mode 100644 index 225d16cf..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728c.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce9728c", - "name": "Fuel Oil 1" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728d.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728d.json deleted file mode 100644 index 2627f806..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728d.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce9728d", - "name": "Fuel Oil 2" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728e.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728e.json deleted file mode 100644 index 5e7305b5..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728e.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce9728e", - "name": "Fuel Oil 6" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728f.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728f.json deleted file mode 100644 index a4ed77df..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce9728f.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce9728f", - "name": "HFO" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97290.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97290.json deleted file mode 100644 index 3d8ab311..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97290.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce97290", - "name": "Diesel" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97291.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97291.json deleted file mode 100644 index 2c52cf65..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97291.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce97291", - "name": "Heating Oil" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97292.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97292.json deleted file mode 100644 index b891be34..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97292.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce97292", - "name": "Bunker" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97293.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97293.json deleted file mode 100644 index 208efa33..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97293.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce97293", - "name": "Group V" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97294.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97294.json deleted file mode 100644 index a206587e..00000000 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/label/5f1e740e5f665c3a4ce97294.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "_id": "5f1e740e5f665c3a4ce97294", - "name": "Other" -} \ No newline at end of file diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00005.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00005.json index ae082679..89d7ebb1 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00005.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00005.json @@ -1,6 +1,6 @@ { "oil_id": "AD00005", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "ABSORPTION OIL", "source_id": "AD00005", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00009.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00009.json index 755059ee..ccee021a 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00009.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00009.json @@ -1,6 +1,6 @@ { "oil_id": "AD00009", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "ABU SAFAH", "source_id": "AD00009", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00010.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00010.json index bf0e425e..13705c9f 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00010.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00010.json @@ -1,6 +1,6 @@ { "oil_id": "AD00010", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "ABU SAFAH, ARAMCO", "source_id": "AD00010", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00017.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00017.json index 28152845..be63105a 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00017.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00017.json @@ -1,6 +1,6 @@ { "oil_id": "AD00017", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "ADGO", "source_id": "AD00017", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00020.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00020.json index 9d55fdbf..89c8cf14 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00020.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00020.json @@ -1,6 +1,6 @@ { "oil_id": "AD00020", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "ALASKA NORTH SLOPE", "source_id": "AD00020", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00024.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00024.json index 22e9d002..c9969dd1 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00024.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00024.json @@ -1,6 +1,6 @@ { "oil_id": "AD00024", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "ALBERTA (1992)", "source_id": "AD00024", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00025.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00025.json index 2dc20cc3..08febb31 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00025.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00025.json @@ -1,6 +1,6 @@ { "oil_id": "AD00025", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "ALBERTA SWEET MIXED BLEND", "source_id": "AD00025", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00038.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00038.json index 7a5b99ec..9c928b32 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00038.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00038.json @@ -1,6 +1,6 @@ { "oil_id": "AD00038", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "ARABIAN (1996)", "source_id": "AD00038", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00047.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00047.json index ca749078..f037b35a 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00047.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00047.json @@ -1,6 +1,6 @@ { "oil_id": "AD00047", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "ARABIAN HEAVY, AMOCO", "source_id": "AD00047", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00084.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00084.json index 9de7b9e6..28992efb 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00084.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00084.json @@ -1,6 +1,6 @@ { "oil_id": "AD00084", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "AUTOMOTIVE GASOLINE, EXXON", "source_id": "AD00084", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00125.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00125.json index 6021daf0..5337298b 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00125.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00125.json @@ -1,6 +1,6 @@ { "oil_id": "AD00125", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "BCF 24", "source_id": "AD00125", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00135.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00135.json index a7178ee8..b4c9f4bf 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00135.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00135.json @@ -1,6 +1,6 @@ { "oil_id": "AD00135", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "BELRIDGE HEAVY", "source_id": "AD00135", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00269.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00269.json index a109d1ff..fe25edf9 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00269.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD00269.json @@ -1,6 +1,6 @@ { "oil_id": "AD00269", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "COOK INLET, DRIFT RIVER TERMINAL", "source_id": "AD00269", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01500.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01500.json index afe142c6..72d7ccb5 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01500.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01500.json @@ -1,6 +1,6 @@ { "oil_id": "AD01500", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "JET A-1, MARITIME SAFETY AUTHORITY OF NEW ZEALAND", "source_id": "AD01500", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01598.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01598.json index 34a079ba..fc72a5f3 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01598.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01598.json @@ -1,6 +1,6 @@ { "oil_id": "AD01598", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "ASPHALT CHARGED STOCK", "source_id": "AD01598", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01853.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01853.json index 811cff70..5c44fcaa 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01853.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01853.json @@ -1,6 +1,6 @@ { "oil_id": "AD01853", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "AIRILE, BP", "source_id": "AD01853", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01901.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01901.json index 75181109..40be4cb5 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01901.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01901.json @@ -1,6 +1,6 @@ { "oil_id": "AD01901", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "SEPINGGAN-YAKIN, OIL & GAS", "source_id": "AD01901", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01987.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01987.json index 6e5fe43e..b400553c 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01987.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01987.json @@ -1,6 +1,6 @@ { "oil_id": "AD01987", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "ALASKA NORTH SLOPE (MIDDLE PIPELINE, 1999)", "source_id": "AD01987", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01998.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01998.json index 122116a3..be79dccf 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01998.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD01998.json @@ -1,6 +1,6 @@ { "oil_id": "AD01998", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "AMAULIGAK (1999)", "source_id": "AD01998", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD02068.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD02068.json index 1f73444e..867ef2a0 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD02068.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/AD/AD02068.json @@ -1,6 +1,6 @@ { "oil_id": "AD02068", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "COHASSET (1999)", "source_id": "AD02068", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC00506.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC00506.json index aa5fe7a9..4282d960 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC00506.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC00506.json @@ -1,6 +1,6 @@ { "oil_id": "EC00506", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "Alaminos Canyon Block 25", "source_id": "506", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC00540.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC00540.json index 63e3239e..20207af1 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC00540.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC00540.json @@ -1,6 +1,6 @@ { "oil_id": "EC00540", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "Bunker C - IFO-300 [1994]", "source_id": "540", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC00561.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC00561.json index 54520a6f..43d0501e 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC00561.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC00561.json @@ -1,6 +1,6 @@ { "oil_id": "EC00561", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "Cook Inlet [2003]", "source_id": "561", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC02234.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC02234.json index 75deb810..62449341 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC02234.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC02234.json @@ -1,6 +1,6 @@ { "oil_id": "EC02234", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "Access West Blend Winter", "source_id": "2234", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC02713.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC02713.json index 3e9d2ad6..90c47621 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC02713.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EC/EC02713.json @@ -1,6 +1,6 @@ { "oil_id": "EC02713", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "Alaska North Slope [2015]", "source_id": "2713", diff --git a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EX/EX00026.json b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EX/EX00026.json index 48ed34ba..8287831d 100644 --- a/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EX/EX00026.json +++ b/adios_db/adios_db/test/data_for_testing/noaa-oil-data/oil/EX/EX00026.json @@ -1,6 +1,6 @@ { "oil_id": "EX00026", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "HOOPS Blend", "source_id": "HOOPS16F", diff --git a/adios_db/adios_db/test/test_importing/example_data/ExampleOutput.json b/adios_db/adios_db/test/test_importing/example_data/ExampleOutput.json index 1e1892b7..fcc17209 100644 --- a/adios_db/adios_db/test/test_importing/example_data/ExampleOutput.json +++ b/adios_db/adios_db/test/test_importing/example_data/ExampleOutput.json @@ -1,6 +1,6 @@ { "oil_id": "EX00001", - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "name": "HOOPS Blend Example", "source_id": "HOOPS16F", diff --git a/adios_db/adios_db/test/test_models/test_common/test_measurement.py b/adios_db/adios_db/test/test_models/test_common/test_measurement.py index b992130e..7e7b90d4 100644 --- a/adios_db/adios_db/test/test_models/test_common/test_measurement.py +++ b/adios_db/adios_db/test/test_models/test_common/test_measurement.py @@ -5,7 +5,7 @@ import pytest -import nucos as uc +import nucos from adios_db.models.common.utilities import dataclass_to_json @@ -653,7 +653,7 @@ def test_convert_to(self): def test_convert_to_invalid(self): model = VolumeFraction(value=1.0, unit='mL/L') - with pytest.raises(uc.InvalidUnitError): + with pytest.raises(nucos.InvalidUnitError): model.convert_to('g/kg') assert model.value == 1.0 @@ -747,7 +747,7 @@ def test_convert_value_invalid(self): unit='fraction', unit_type="volumeFraction") - with pytest.raises(uc.InvalidUnitError): + with pytest.raises(nucos.InvalidUnitError): _model2 = model.converted_to('g/kg') def test_convert_conc_value_invalid(self): @@ -755,7 +755,7 @@ def test_convert_conc_value_invalid(self): unit='fraction', unit_type="Concentration") - with pytest.raises(uc.InvalidUnitError): + with pytest.raises(nucos.InvalidUnitError): _model2 = model.converted_to('g/kg') def test_integer_value(self): @@ -836,7 +836,7 @@ def test_convert_to(self): def test_convert_to_invalid(self): model = Concentration(value=50, unit='%') - with pytest.raises(uc.InvalidUnitError): + with pytest.raises(nucos.InvalidUnitError): model.convert_to('g/kg') assert model.value == 50 @@ -974,3 +974,57 @@ def test_convert_to(self): # assert math.isclose(model.value, 10.0, rel_tol=1e-05) assert model.value == 1.0 assert model.unit == 'N/m' + + +@pytest.mark.skipif(not hasattr(nucos, 'is_supported_unit'), reason='nucos too old for unit checking') +class TestUnitValidation: + """ + Tests for the validation of units matching the unit_type + """ + def test_good_unit(self): + """ + a good unit shouldn't create any warnings or errors + """ + len = Length(4, 'm') + msgs = len.validate() + + assert not msgs + + def test_bad_unit(self): + """ + an arbitrary bad unit + """ + len = Length(4, 'sploit') + msgs = len.validate() + + print(msgs) + assert msgs + assert "E045: Unit: 'sploit' is not a valid unit for unit type: 'length'" in msgs[0] + + def test_bad_unit_temp(self): + """ + Temperature has another validator -- make sure it hasn't overridden this one + """ + temp = Temperature(value=98.6, unit='Fred') + + msgs = temp.validate() + + print(msgs) + assert msgs + + def test_unitless_good(self): + meas = Unitless(value=1.2) + + msgs = meas.validate() + + assert not msgs + + def test_unitless_bad(self): + meas = Unitless(value=1.2, unit='nothing') + + msgs = meas.validate() + + assert msgs[0] == "E045: Unitless measurements should have no unit. 'nothing' is not valid" + + + diff --git a/adios_db/adios_db/test/test_models/test_oil/test_physical_properties.py b/adios_db/adios_db/test/test_models/test_oil/test_physical_properties.py index 26a3e983..c5d6ff24 100644 --- a/adios_db/adios_db/test/test_models/test_oil/test_physical_properties.py +++ b/adios_db/adios_db/test/test_models/test_oil/test_physical_properties.py @@ -138,12 +138,15 @@ def test_validate_bad_temp(self): msgs = DL.validate() - print(msgs) + for msg in msgs: + print(msg) - assert len(msgs) == 2 + assert len(msgs) == 4 for msg in msgs: - assert "E040:" in msg - assert "Density" in msg + assert ("E040:" in msg and "DensityList" in msg + or + "W010:" in msg and "Temperature" in msg + ) def test_validate_non_numeric_value(self): dp1 = DensityPoint(density=Density(value=900, unit='kg/m^3'), diff --git a/adios_db/adios_db/test/test_models/test_oil/test_properties.py b/adios_db/adios_db/test/test_models/test_oil/test_properties.py index 5561f386..8d5f1313 100644 --- a/adios_db/adios_db/test/test_models/test_oil/test_properties.py +++ b/adios_db/adios_db/test/test_models/test_oil/test_properties.py @@ -5,8 +5,18 @@ Dispersibility, DispersibilityList, Emulsion, - EmulsionList) -from adios_db.models.common.measurement import Temperature + EmulsionList, + ) + +from adios_db.models.oil.physical_properties import(DynamicViscosityPoint, + KinematicViscosityPoint, + ) +from adios_db.models.common.measurement import (Temperature, + AngularVelocity, + MassFraction, + DynamicViscosity, + KinematicViscosity, + ) class TestInterfacialTensionPoint: @@ -185,6 +195,47 @@ def test_from_partial_json(self): # this works, because py_json is sparse by default assert model.py_json() == json_obj + def test_from_partial_with_dynamic_viscosity(self): + """ + Should be able to load an incomplete object + """ + model = Emulsion() + model.dynamic_viscosities.append( + DynamicViscosityPoint(viscosity=DynamicViscosity(value=660000, unit='cP'), + ref_temp=Temperature(value=15, unit='C'), + shear_rate=AngularVelocity(1, '1/s'), + )) + model.water_content = MassFraction(value=80.0, unit='%') + + # the measurement classes will add unit_type, so we add it to more + # easily compare the output + json_obj = model.py_json() + print(json_obj) + + # completely arbitrary single value to check + assert json_obj['dynamic_viscosities'][0]['ref_temp']['value'] == 15 + assert Emulsion.from_py_json(json_obj) == model + + def test_from_partial_with_kinematic_viscosity(self): + """ + Should be able to load an incomplete object + """ + model = Emulsion() + model.kinematic_viscosities.append( + KinematicViscosityPoint(viscosity=KinematicViscosity(value=660000, unit='cSt'), + ref_temp=Temperature(value=15, unit='C'), + shear_rate=AngularVelocity(1, '1/s'), + )) + model.water_content = MassFraction(value=80.0, unit='%') + + # the measurement classes will add unit_type, so we add it to more + # easily compare the output + json_obj = model.py_json() + print(json_obj) + + # completely arbitrary single value to check + assert json_obj['kinematic_viscosities'][0]['ref_temp']['value'] == 15 + assert Emulsion.from_py_json(json_obj) == model class TestEmulsionList: # NOTE: this is redundant testing from above! diff --git a/adios_db/adios_db/test/test_models/test_oil/test_validation/test_validation.py b/adios_db/adios_db/test/test_models/test_oil/test_validation/test_validation.py index f4aa3d27..6c875e34 100644 --- a/adios_db/adios_db/test/test_models/test_oil/test_validation/test_validation.py +++ b/adios_db/adios_db/test/test_models/test_oil/test_validation/test_validation.py @@ -9,7 +9,7 @@ import math import pytest -import nucos as uc +import nucos from adios_db.computation import physical_properties from adios_db.models.oil.oil import Oil @@ -277,7 +277,7 @@ def test_API_density_match(minimal_oil): oil.sub_samples[0].physical_properties.densities.append(density) density_at_60F = physical_properties.Density(oil).at_temp(60, 'F') - API = uc.convert('kg/m^3', 'API', density_at_60F) + API = nucos.convert('kg/m^3', 'API', density_at_60F) print(density_at_60F) print(API) @@ -300,7 +300,7 @@ def test_API_density_missmatch(minimal_oil): oil.sub_samples[0].physical_properties.densities.append(density) density_at_60F = physical_properties.Density(oil).at_temp(60, 'F') - API = uc.convert('kg/m^3', 'API', density_at_60F) + API = nucos.convert('kg/m^3', 'API', density_at_60F) print(f"{density_at_60F=}") print(f"{API=}") @@ -427,6 +427,33 @@ def test_does_not_break_test_records(): nothing breaks """ for rec, _path in get_all_records(TEST_DATA_DIR): + print("Validating:", _path) _msgs = rec.validate() assert True + + +@pytest.mark.skipif(not hasattr(nucos, 'is_supported_unit'), reason='nucos too old for unit checking') +def test_bad_unit(): + """ + Making sure a bad unit trickles up through the validation + """ + record_file = (HERE.parent.parent.parent / "data_for_testing" / "example_data" / + "RecordWithUnitErrors.json") + + oil = Oil.from_file(record_file) + + msgs = oil.validate() + + expected_errors = ["E045: Unit: 'g/oz' is not a valid unit for unit type: 'density'", + "E045: Unit: 'Celcius' is not a valid unit for unit type: 'temperature'", + ] + + for err in expected_errors: + for msg in msgs: + if err in msg: + break + else: + assert False, f'"{err}" not in validation messages' + + diff --git a/adios_db/create_conda_env.py b/adios_db/create_conda_env.py new file mode 100755 index 00000000..4b27bca4 --- /dev/null +++ b/adios_db/create_conda_env.py @@ -0,0 +1,46 @@ +#!/usr/bin/env python + +import sys +import subprocess + +USAGE = """ +create_conda_env.py environment_name [run|test|all] + +create a conda environment for the adios_db project + +saves typing in all the requirements files + +default is "run" -- full dev environment + +"run" will only give you wnat you need to run the code without mongodb + +"test will give you want you need to run the tests (without mongo) + +"all" will install everything for running and testing with mongodb + +NOTE: currently hard-coded for Python 3.9 +""" + +if __name__ == "__main__": + try: + env_name = sys.argv[1] + except IndexError: + print(USAGE) + sys.exit(1) + argv = sys.argv[2:] + reqs = ["conda_requirements.txt"] + if "test" in argv or "all" in argv: + reqs.append("conda_requirements_test.txt") + if "all" in argv: + reqs.append("conda_requirements_optional.txt") + reqs.append("docs_requirements.txt") + + cmd = ["conda", "create", "-n", env_name, "python=3.9"] + for req in reqs: + cmd.extend(["--file", req]) + print("running\n", cmd) + subprocess.run(cmd) + + + + diff --git a/examples/AD-Example-Record.json b/examples/AD-Example-Record.json index a9c44497..17aa5156 100644 --- a/examples/AD-Example-Record.json +++ b/examples/AD-Example-Record.json @@ -1,5 +1,5 @@ { - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "API": 37.0, "comments": "This oil is a EPS standard oil for dispersant testing.", diff --git a/examples/EC-Example-Record.json b/examples/EC-Example-Record.json index 2ed75f03..9da2b150 100644 --- a/examples/EC-Example-Record.json +++ b/examples/EC-Example-Record.json @@ -1,5 +1,5 @@ { - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "API": 20.9, "comments": "Via CanmetEnergy, Natural Resources Canada", diff --git a/examples/EX-Example-Record.json b/examples/EX-Example-Record.json index e8ae7f3d..be4db3c6 100644 --- a/examples/EX-Example-Record.json +++ b/examples/EX-Example-Record.json @@ -1,5 +1,5 @@ { - "adios_data_model_version": "0.11.0", + "adios_data_model_version": "0.12.0", "metadata": { "API": 32.0, "location": "Guyana", diff --git a/mongo_files/just_to_keep_this_dir_in_git b/mongo_files/just_to_keep_this_dir_in_git new file mode 100644 index 00000000..e69de29b