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* First draft to add chgresfcst to rocoto workflow * Issue #1: update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base * Commit changes from debugging addition of chgresfcst on hera * add checkout.sh to test on Dell * Adapting wavepostsbs for running on Hera * Issue #1 - Hotfix to update anaconda module contrib path on Hera * modified: checkout.sh to check out upp_gfsv16_relaese.v1.0.9 output cloud ceiling height and instant total cloud fraction. output instant cloud fraction at low/mid/high cloud layer. correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC". output radar reflectivity at 1/4 km above ground and model layer 1/2. output mixed layer CAPE/CIN. Remove simulated GOES-12 brightness temperature from gfs product. Add the bug fix of initializing DBZI from Ruiyu. * Update exwave_post_sbs.sh Removing obsolete nm variable entries * Issue #1 - update Externals.cfg to match updates to checkout.sh * Issue NOAA-EMC#85: add cfp option to chgresfcst; enable threads with chgresfcst * modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA * Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag * update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. * modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel * Issue NOAA-EMC#85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env * Issue NOAA-EMC#85: update DA checkout to point at release/gfsda.v16.0.0 * Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. * Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh * modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues NOAA-EMC#136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue NOAA-EMC#152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 * Update README.md Remove use/mention of manage_externals until checkout.sh is retired. * fix for exiting properly with error for wave prep/init scripts * Issue #1: HPSS archive and MOS script changes * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs * add ensemble resolution analysis to HPSS gdas tarball * allow variable range to be externally set in run_gfsmos_master scripts * modified: config.vrfy to point a different syndat directory on Hera export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com" export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat} * corrected a typo in hpssarch_gen.sh - echo "${dirname}${head}atma000.ensres${SUFFIX} " >>gdas.txt + echo "${dirname}${head}atma009.ensres${SUFFIX} " >>gdas.txt * modified: config.vrfy to add elif [ $machine = "HERA" ] ; then export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera" * Issue NOAA-EMC#94 - generalization updates to link script - change 'nco' mode to 'prod' mode - change 'emc' mode to 'dev' mode - update machine values to match target names * Issue NOAA-EMC#94 - commit initial version of new installation script * modified: jobs/JGLOBAL_FORECAST parm/config/config.wave scripts/exglobal_fcst_nemsfv3gfs.sh add WW3 break-point restart capability and clean up forecast script. * further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle as well * Issue #1: update sorc/checkout.sh to checkout verif_global_v1.9.0 * Issue #1: set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA" * Issue NOAA-EMC#94 - initial add of COMPONENTatmos variable to scripts * modified: checkout.sh to checkout model tag GFS.v16.0.9 1. WW3 update: write all restart files in a sub-directory restart_wave 2. Port production/GFS.v16 to Orion (NOAA-EMC#129) * Update FV3 submodule * Update NEMS submodule * Add 'ulimit -s unlimited' to Orion job card template * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS' * Update modulefiles/orion.intel/fv3 * Update regression test configuration on Orion (for gfs_v16) * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance) * Update NEMS submodule (point to NOAA-EMC/NEMS) * Issue NOAA-EMC#94 - convert variables into hard-coded values per feedback * Issue NOAA-EMC#94 - fix dependencies with in the path * Issue #1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh * modified: ../Externals.cfg and checkout.sh to check out UPP tag tag upp_gfsv16_release.v1.0.10 and model tag GFS.v16.0.10 Updated the algorithm used to compute CAPE and CIN in UPP. The computation is now bounded from the surface up to 1 hPa instead of the model top to avoid producing erroneous large CAPE and CIN values. * modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos * Revert "modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos" This reverts commit 4977271. * GitHub Issue#94 update gempak's ush scripts * Issue NOAA-EMC#94 - added and [wave] back in after feedback from Steven Earle, also renamed the wave scripts to match the correct convention * Issue NOAA-EMC#94 - updates to wave scripts based on NCO feedback * Issue NOAA-EMC#94 - remove COMPONENTatmos and COMPONENTwave, use COMIN[COMOUT]atmos[wave] instead * Issue NOAA-EMC#94 - revert RSTDIR_WAVE if-block compression to retain breakpoint restarting * Issue NOAA-EMC#94 - fix dirpath in ush/hpssarch_gen.sh * Issue NOAA-EMC#94 - component checkout updates to use forks and new UPP tag * Issue #1: add enkf member sfcf006.nc to enkf tarballs * Issue NOAA-EMC#94 - new GLDAS tag with atmos directory * Issue #1: refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env * Reverting link_fv3gfs.sh, will commit in different changeset * Issue NOAA-EMC#94 - updating GLDAS and EMC_post tags in Externals.cfg * Issue NOAA-EMC#94 - add to gempak scripts and cleanup based on PR feedback * Issue NOAA-EMC#94 - removing new install script, will introduce via another branch, needs more testing * Issue NOAA-EMC#94 - retire BASE_SVN * Issue NOAA-EMC#94 - add default to fhmax in vrfy.sh for when prior tasks disabled and set new path to restructured gfsmos * Issue NOAA-EMC#94 - reverting GSI and EMC_gfs_wafs checkouts back to authoritative repos ahead of their updating for new , will update EMC_gfs_wafs to new tag when available * Issue NOAA-EMC#94 - move UFS_UTILS link script step from build_ufs_utils.sh to link_fv3gfs.sh based on feedback from GEFS team * Issue NOAA-EMC#94 - small fix to updated UFS_UTILS part of link_fv3gfs.sh * Issue NOAA-EMC#94 - adding -o flag to checkout.sh for optional GTG checkout with EMC_post * Issue NOAA-EMC#94 - updates for FSU tracker * Issue NOAA-EMC#94 - fix AWIPS file dependency * Issue NOAA-EMC#94 - update WCOSS-Dell module versions to prod_util and EnvVars * Issue NOAA-EMC#94 - update CFP module version on WCOSS-Dell * Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal * Issue NOAA-EMC#94 - pull in two fixes for wave job setup in free-forecast mode * Issue NOAA-EMC#94 - fix to messed up shebang in setup_expt_fcstonly.py Co-authored-by: CoryMartin-NOAA <cory.r.martin@noaa.gov> Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov> Co-authored-by: henrique.alves <Henrique.Alves@noaa.gov> Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov> Co-authored-by: fanglin.yang <fanglin.yang@noaa.gov> Co-authored-by: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Co-authored-by: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov> Co-authored-by: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
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