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Bugfix/coupled crow #95

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JianKuang-Intelsat
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This PR addressed some bugs causing an error when running uncoupled case using feature/coupled-crow branch.

Moved the determination of "cpl" to defaults/settings from config/base.yaml

Please test on Hera and other supported platforms to see if both coupled and uncoupled case could be generated successfully.

One could create an uncoupled case by changing "cplflx" to "false" in the case file.

JessicaMeixner-NOAA and others added 30 commits February 28, 2020 14:43
making readme consistant with user.yaml.default
…i cplwav model_config block. Reinstating config.wave block in JGLOBAL_FORECAST. Pointing EXECwave to HOMEgfs/exec directory for WW3 util executables (changed link_fv3gfs.sh accordingly). Removing debug options from compile.sh line in build_fv3.sh.
move default value into defaults/
It's better if we have one place to manage default values
for configurable variables other than two

Default values only for reference.

Please throughly test to make sure it could reproduce.
         default field table change to match current selection
scripts update: CCPP and IPD works
add hard-coded variables into config.fcst (fcst.yaml)
ice variable istep0 bug fix
add FNMSKH conditional clause, coupled vs non-coupled
…ripts

Conflicts:
	workflow/platforms/_sandbox.yaml
@jiandewang
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(1) ocnpost failed, you need to define ncks in config.base
HERA: ncks=/apps/nco/4.9.1/intel/18.0.5.274/bin/ncks
ORION: ncks=/apps/intel-2020/nco-4.8.1/bin/ncks
(2) cron works on HERA, but not on ORION, once cold start finished, it will not launch warm start, even if I manually launch it. My log file is at: /work/noaa/marine/Jiande.Wang/CROW/wrk/COMROOT/test_3d/logs/2013040100

@JianKuang-Intelsat
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@jiandewang would you please test this PR once again on Orion?

@JessicaMeixner-NOAA
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I think for the ocean post to work, we need all the updates that are in my branch here: https://github.com/JessicaMeixner-NOAA/global-workflow/tree/s2s_prototype4

@jiandewang
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jiandewang commented Jul 15, 2020 via email

@JianKuang-Intelsat
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@JessicaMeixner-NOAA I will merge it in.

@JessicaMeixner-NOAA
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@JianKuang-NOAA that branch is not ready to be merged into the feature/coupled-crow branch yet

@jiandewang
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jiandewang commented Jul 15, 2020 via email

@JessicaMeixner-NOAA
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@JianKuang-NOAA I said that the branch was not ready to be merged into feature/coupled-crow, so why was it merged into this PR?

In addition - the comment I made about cplwav still needs to be addressed

@JianKuang-Intelsat
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@JessicaMeixner-NOAA Sorry I overlooked your previous comment. I will re-draft this PR.

lgannoaa pushed a commit to lgannoaa/global-workflow that referenced this pull request Feb 9, 2022
* Initial spack/cmake version

* updated for umbrella build

* tweak to findnetcdf

* added include directory

* updated cmake

* changed to https for cmake submodule

* updated cmake submodule

* updated install directory

* added build for libnceppost.a

* modifications for macOS clang/gfortran build

* updated for gnu build

* udpated cmake submodule

* Add RST file for UPP v4.0

* Modifying introduction

* merged develop in and separated library from executable in build

* Update CMakeLists.txt files to support GNU compilers

* applied patch from Dusan

* Add conf.py for upp documentation

* Add index.rst for upp documentation

* Add readthedocs config file

* Modify name of main rst doc in index for readthedocs build test

* Change master file to index

* Edits for UFS documentation to remove WRF and grib1 references

* Add a readthedocs config file

* Mods to config and index files for use in readthedocs

* Update submodule pointer for cmake

* Remove old GNU makefiles with problematic names (only differing in case from existing files)

* Add files for GRIB2 table of fields

* Update .gitmodules, add branch = ufs_release_1.0 for cmake

* Update .gitmodules for testing, code review and merging

* Update include/lib flags for sigio, sfcio, nemsio

* Add REQUIRED attribute to find_package calls in CMakeLists.txt

* Comment out LAPACK dependency in CMakeLists.txt

* Revert change to .gitmodules, update submodule pointer for cmake

* sorc/ncep_post.fd/CMakeLists.txt: change GFSIO_INC to GFSIO_INC4

* Add capacity of detecting scaning mode north2south vs south2north in gaussian grid from Dusan.

* Re-factor CMake

* Fix library linking

* small fix to kyles refactor

* Add capacity of detecting scaning mode north2south vs south2north in gaussian grid from Dusan.

* Fix typo in sorc/ncep_post.fd/CMakeLists.txt

* Fix how Intel compile options with spaces in them are handled

* Update branch name for cmake submodule, update submodule pointer

* Update submodule pointer for cmake

* Update .gitmodules and submodule pointer for cmake, bugfixes for CMakeLists.txt

* Update submodule pointer for cmake

* fixes problem linking ncep_post with gnu/openmpi

* Update submodule pointer for cmake

* Revert .gitmodules change

* Bugfix: comment out debug print statement that can lead to out-of-bounds access; update submodule pointer for cmake

* Update submodule pointer for cmake

* OpenMP bugfix, use lowercase in find_package(CRTM)

* Fix post crash on macOS: use allocatable array

* Update submodule pointer for cmake

* Add UFS UPP rst documentation

* Update submodule pointer for cmake

* Rename g2tmpl_d to g2tmpl (NOAA-EMC#89)

* Update submodule pointer for cmake

* cleanup post

Change-Id: Ie52af5ff79ac4122e79d7a46e89ee2077188b0a4

* we dont depend on C HDF5 library. remove.

Change-Id: I26aa7c0bf7ed2783de1a9967d961d0260dee8b54

* use transitive properties. apply OpenMP flags if OpenMP is found. Formatting using cmake-format

Change-Id: Ic08ce6bc85a7d949c779ec597241c8cb4c20db86

* add debug gnu flags. compile_definitions does not like the quotes around long long, remove

Change-Id: Iccd5bb496944f75a79500729051dd571303cb50f

* Update CMakeLists.txt

* Update submodule pointer for cmake

* Update submodule pointer for cmake

* Add LGPL license to repository

* EMC_post is a Fortran only project. blockIO.c is not used, so do not include in building

* Update submodule pointer for cmake

* Bug fix for unary operator in INITPOST_GFS_NEMS_MPIIO.f. (NOAA-EMC#92)

* Remove old unused makefiles

* CMakeLists.txt: install postxconfig-NT-GFS-F00.txt and postxconfig-NT-GFS.txt in share directory

* Update version

@fossell says post is at version 8.0.0

* Update submodule pointer for cmake

* Fix Out of Bound Exception in GFSPOST.F (NOAA-EMC#100)

* Fix out-of-bound error in tpause routine in GFSPOST.F

* Fix use of undefined variables.

* Feature/cleanup (NOAA-EMC#95)

* cleanup post

Change-Id: Ie52af5ff79ac4122e79d7a46e89ee2077188b0a4

* we dont depend on C HDF5 library. remove.

Change-Id: I26aa7c0bf7ed2783de1a9967d961d0260dee8b54

* use transitive properties. apply OpenMP flags if OpenMP is found. Formatting using cmake-format

Change-Id: Ic08ce6bc85a7d949c779ec597241c8cb4c20db86

* add debug gnu flags. compile_definitions does not like the quotes around long long, remove

Change-Id: Iccd5bb496944f75a79500729051dd571303cb50f

* Update CMakeLists.txt

* EMC_post is a Fortran only project. blockIO.c is not used, so do not include in building

* Update version

@fossell says post is at version 8.0.0

* Revert "Feature/cleanup (NOAA-EMC#95)"

This reverts commit 7e9797b355d2b86ea9e274534f86adc42e866b95.

* remove unused compile definitions and update cmake pointer

Change-Id: Ie47cf16ebc25928bf30bfd05d4f25678219571a6

* Fix ID index in WRF-CHEM SMOKE block, which currently causes failed build in debug mode

* remove unnecessary commented line

* NetCDF static fix (#1)

* CMakeLists.txt: add MODULE to find_package calls

* Cleanup of NetCDF in CMakeLists.txt

* update cmake submodule pointer

Change-Id: I763882fd6ecc4b8cc64a60eddabccfdb7046040d

* Add MODULE to find_package(NetCDF) call (NOAA-EMC#3)

* update cmake submodule pointer

Change-Id: I69015efa425658645567e9d9f22d5e51301c1a0b

* Change version from 8.0.0 to 1.0.0

* fix the install path of compiled Fortran module files

Co-authored-by: Mark A Potts <mark.potts@noaa.gov>
Co-authored-by: Dom Heinzeller <climbfuji@ymail.com>
Co-authored-by: Mark Potts <33099090+mark-a-potts@users.noreply.github.com>
Co-authored-by: Tracy <hertneky@ucar.edu>
Co-authored-by: Kate Fossell <fossell@ucar.edu>
Co-authored-by: Dusan Jovic <dusan.jovic@noaa.gov>
Co-authored-by: Wen Meng <wen.meng@noaa.gov>
Co-authored-by: Dom Heinzeller <dom.heinzeller@icloud.com>
Co-authored-by: Kyle Gerheiser <kgerheiser@icloud.com>
Co-authored-by: Mark Potts <mpotts@redlineperf.com>
Co-authored-by: Kyle Gerheiser <3209794+kgerheiser@users.noreply.github.com>
Co-authored-by: Dom Heinzeller <dom.heinzeller@noaa.gov>
Co-authored-by: Tracy <tracy.hertneky@noaa.gov>
Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com>
Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com>
Co-authored-by: Dusan Jovic <48258889+DusanJovic-NOAA@users.noreply.github.com>
TerrenceMcGuinness-NOAA added a commit that referenced this pull request Jun 8, 2023
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6 participants