Incorporate multi-cycle concatination and separation of variables in post-BUFR observations

[AndrewEichmann-NOAA]

Description

• Implements modifications to concatinate IODA observation files converted from BUFR format from multiple cycles in a window to a single file for the current cycle
• Separates temperature from salinity observations in Argo floats so that they are delivered to obs under COMROOT as two separate IODA files

Tested with C48mx500_3DVarAOWCDA and C48mx500_hybAOWCDA on Hera with NOAA-EMC/jcb-gdas#78 and obs spaces enabled in OBS_LIST. Aside from passing test, files gdas.t00z.insitu_salt_profile_argo.2021032500.nc4 and gdas.t00z.insitu_temp_profile_argo.2021032500.nc4 are delivered to gdas.20210325/00/obs bearing plausible-looking values for salt and temperature respectively, and seem to be assimilated. No quantitative analysis has been performed on these obs.

Companion PRs

Not necessary for merging and passing ctests, but if new obs spaces get included the following is needed:
NOAA-EMC/jcb-gdas#78

Issues

Mostly resolves #1132

Automated CI tests to run in Global Workflow

• C48mx500_3DVarAOWCDA
• C48mx500_hybAOWCDA

[guillaumevernieres]

The obs spaces for insitu temp and salt are not setup correctly. I added links to simple examples from the soca repo for guidance.

[emcbot]

Automated GW-GDASApp Testing Results:
Machine: hera

Start: Fri Feb 21 20:12:59 UTC 2025 on hfe01
---------------------------------------------------
Build:                                 *SUCCESS*
Build: Completed at Fri Feb 21 20:58:03 UTC 2025
---------------------------------------------------
Tests: ctest -j12 -R gdasapp -E atm_jjob|C96C48_ufs_hybatmDA|C96C48_hybatmaerosnowDA|C96C48_hybatmDA
Tests:                                  *Failed*
Tests: Failed at Fri Feb 21 23:47:07 UTC 2025
Tests: 84% tests passed, 9 tests failed out of 56
	2044 - test_gdasapp_C48mx500_3DVarAOWCDA_gdas_marineanlinit_202103250000 (Failed)
	2045 - test_gdasapp_C48mx500_3DVarAOWCDA_gdas_marineanlvar_202103250000 (Failed)
	2046 - test_gdasapp_C48mx500_3DVarAOWCDA_gdas_marineanlchkpt_202103250000 (Failed)
	2047 - test_gdasapp_C48mx500_3DVarAOWCDA_gdas_marineanlfinal_202103250000 (Failed)
	2055 - test_gdasapp_C48mx500_hybAOWCDA_gdas_marineanlletkf_202103250000 (Failed)
	2056 - test_gdasapp_C48mx500_hybAOWCDA_gdas_marineanlinit_202103250000 (Failed)
	2057 - test_gdasapp_C48mx500_hybAOWCDA_gdas_marineanlvar_202103250000 (Failed)
	2059 - test_gdasapp_C48mx500_hybAOWCDA_gdas_marineanlchkpt_202103250000 (Failed)
	2060 - test_gdasapp_C48mx500_hybAOWCDA_gdas_marineanlfinal_202103250000 (Failed)
Tests: see output at /scratch1/NCEPDEV/da/role.jedipara/CI/GDASApp/workflow/PR/1504/global-workflow/sorc/gdas.cd/build/log.ctest

[AndrewEichmann-NOAA]

The last CI seems to have been started before the latest commits (particularly to obs_list)

[emcbot]

Automated GW-GDASApp Testing Results:
Machine: hera

Start: Mon Feb 24 15:45:02 UTC 2025 on hfe10
---------------------------------------------------
Build:                                 *SUCCESS*
Build: Completed at Mon Feb 24 16:29:13 UTC 2025
---------------------------------------------------
Tests: ctest -j12 -R gdasapp -E atm_jjob|C96C48_ufs_hybatmDA|C96C48_hybatmaerosnowDA|C96C48_hybatmDA
Tests:                                 *SUCCESS*
Tests: Completed at Mon Feb 24 17:04:28 UTC 2025
Tests: 100% tests passed, 0 tests failed out of 56

[apchoiCMD]

look good-

[AndrewEichmann-NOAA]

Does this need any more changes?

[apchoiCMD]

Does this need any more changes?

Let me quickly check one more time-

[guillaumevernieres]

Just 1 minor thing @AndrewEichmann-NOAA