update jedi hashes in sorc/ using ush/submodules/update_develop.sh (#…

…1362)
NOAA-EMC · Nov 11, 2024 · bbb07ab · bbb07ab
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Showing 8 changed files with 8 additions and 8 deletions.
diff --git a/sorc/fv3-jedi b/sorc/fv3-jedi
diff --git a/sorc/ioda b/sorc/ioda
diff --git a/sorc/iodaconv b/sorc/iodaconv
diff --git a/sorc/oops b/sorc/oops
diff --git a/sorc/saber b/sorc/saber
diff --git a/sorc/soca b/sorc/soca
diff --git a/sorc/ufo b/sorc/ufo
diff --git a/sorc/vader b/sorc/vader
+2 −0		share/CMakeLists.txt
+32 −0		share/ioda/yaml/iodatest_odb_mtgirs.yaml
+0 −1		share/ioda/yaml/iodatest_odb_oceancolour.yaml
+20 −0		share/ioda/yaml/iodatest_odb_stationsnow.yaml
+18 −0		share/ioda/yaml/odb_radiance_name_map.yaml
+16 −0		share/ioda/yaml/validation/ObsSpace.yaml
+0 −1		src/CMakeLists.txt
+47 −10		src/ObsDataVector.h
+15 −2		src/ObsVector.cc
+3 −0		src/ObsVector.h
+39 −13		src/containers/FrameCols.cpp
+55 −16		src/containers/FrameCols.h
+1 −0		src/containers/FrameColsData.cpp
+53 −4		src/containers/FrameColsData.h
+69 −14		src/containers/FrameRows.cpp
+74 −6		src/containers/FrameRows.h
+7 −2		src/containers/FrameRowsData.cpp
+61 −12		src/containers/FrameRowsData.h
+25 −0		src/containers/FunctionsCols.cpp
+3 −0		src/containers/FunctionsCols.h
+0 −52		src/containers/FunctionsRows.cpp
+0 −32		src/containers/FunctionsRows.h
+8 −0		src/containers/IColsData.h
+40 −1		src/containers/IFrame.h
+9 −0		src/containers/IFrameData.h
+0 −35		src/containers/IRowsData.h
+19 −1		src/containers/IView.h
+23 −7		src/containers/ViewCols.cpp
+33 −4		src/containers/ViewCols.h
+21 −2		src/containers/ViewColsData.cpp
+34 −8		src/containers/ViewColsData.h
+66 −20		src/containers/ViewRows.cpp
+65 −5		src/containers/ViewRows.h
+27 −9		src/containers/ViewRowsData.cpp
+35 −12		src/containers/ViewRowsData.h
+15 −3		src/engines/ioda/src/ioda/Engines/ODC/DataFromSQL.cpp
+4 −0		src/engines/ioda/src/ioda/Engines/ODC/DataFromSQL.h
+2 −1		src/engines/ioda/src/ioda/Engines/ODC/ODC.cpp
+4 −0		src/mains/odfDemo/CMakeLists.txt
+239 −0		src/mains/odfDemo/odfViewTest.cpp
+2 −1		src/obsspace_mod.F90
+35 −9		test/CMakeLists.txt
+12 −0		test/ioda/ObsVector.h
+5 −3		CMakeLists.txt
+1 −0		src/compo/CMakeLists.txt
+20 −25		src/compo/airnow2ioda_nc.py
+3 −3		src/compo/gcas_nc2ioda.py
+5 −5		src/compo/icartt_nc2ioda.py
+299 −0		src/compo/pandora_2ioda.py
+2 −1		src/compo/tempo_nc2ioda.py
+15 −5		src/conventional/ionosonde_ascii2ioda.py
+1 −1		src/gsi_ncdiag/CMakeLists.txt
+1 −1		src/gsi_ncdiag/gsi_ncdiag.py
+3 −3		src/gsi_varbc/GsiAircraftBiasConverter.cc
+1 −0		src/hdf5/CMakeLists.txt
+93 −48		src/hdf5/cloudsat_netcdf_to_ioda.py
+15 −10		src/hdf5/osw_2ioda.py
+17 −13		src/hdf5/read_cloudsat.py
+145 −0		src/hdf5/read_dpr_gpm.py
+1 −1		src/pyiodaconv/CMakeLists.txt
+27 −0		test/CMakeLists.txt
+100 −0		test/testinput/Pandora57s1_BoulderCO_L2_rnvs3p1-8.txt
+ −		test/testinput/gpm_dpr_20240401-S105223-E122536.sample.hdf5
+3 −0		test/testoutput/20240401T105230_PT1M_dpr_gpm.nc
+3 −0		test/testoutput/Pandora57s1_BoulderCO_L2_rnvs3p1-8.nc
+3 −0		test/testoutput/acft_out.nc4
+2 −2		test/testoutput/airnow_2020081306.nc
+2 −2		test/testoutput/airnow_2020081306_epalist.nc
+1 −1		test/testoutput/ionosonde_edp_20201003T203000Z.nc4
+2 −2		test/testoutput/tempo_no2_stratosphere.nc
+2 −2		test/testoutput/tempo_no2_total.nc
+2 −2		test/testoutput/tempo_no2_troposphere.nc
+1 −1		test/testoutput/varbc/acft_out.nc4
+0 −59		l95/src/lorenz95/BackgroundCheck.cc
+3 −11		l95/src/lorenz95/CMakeLists.txt
+0 −20		l95/src/lorenz95/FinalCheck.cc
+0 −55		l95/src/lorenz95/FinalCheck.h
+1 −0		l95/src/lorenz95/L95Traits.h
+2 −0		l95/src/lorenz95/L95TraitsFwd.h
+69 −0		l95/src/lorenz95/ObsFilter.cc
+18 −14		l95/src/lorenz95/ObsFilter.h
+0 −20		l95/src/lorenz95/QCmanager.cc
+0 −56		l95/src/lorenz95/QCmanager.h
+0 −35		l95/test/CMakeLists.txt
+0 −69		l95/test/lorenz95/FilterStageCheck.cc
+0 −64		l95/test/lorenz95/FilterStageCheck.h
+1 −2		l95/test/testinput/3dvar_qc.yaml
+0 −49		l95/test/testinput/3dvar_qc_filter_ordering_post.yaml
+0 −49		l95/test/testinput/3dvar_qc_filter_ordering_pre.yaml
+0 −55		l95/test/testinput/3dvar_qc_filter_ordering_prepriorpost.yaml
+0 −49		l95/test/testinput/3dvar_qc_filter_ordering_prior.yaml
+0 −51		l95/test/testinput/3dvar_qc_iterations.yaml
+1 −2		l95/test/testinput/3dvar_qc_obserr.yaml
+5 −4		l95/test/testinput/4dvar_drplanczos.yaml
+1 −2		l95/test/testinput/letkf_qc.yaml
+2 −2		l95/test/testinput/makeobs4d.yaml
+2 −2		l95/test/testinput/makeobspert.yaml
+15 −15		l95/test/testoutput/4dvar_drplanczos.test
+2 −4		qg/model/CMakeLists.txt
+0 −14		qg/model/FinalCheck.cc
+0 −54		qg/model/FinalCheck.h
+30 −0		qg/model/ObsFilter.cc
+16 −15		qg/model/ObsFilter.h
+0 −14		qg/model/QCmanager.cc
+1 −0		qg/model/QgTraits.h
+2 −0		qg/model/QgTraitsFwd.h
+0 −8		qg/test/CMakeLists.txt
+2 −2		qg/test/testinput/4dvar_dripcg.yaml
+6 −6		qg/test/testinput/make_obs_4d_24h.yaml
+6 −6		qg/test/testinput/make_obs_4d_24h_5level_pert_heat.yaml
+0 −70		qg/test/testinput/make_obs_4d_24h_filter_ordering.yaml
+23 −23		qg/test/testoutput/4dvar_dripcg.test
+1 −8		src/CMakeLists.txt
+3 −4		src/oops/assimilation/CostJcDFI.h
+1 −1		src/oops/assimilation/CostJo.h
+1 −1		src/oops/assimilation/GETKFSolver.h
+1 −1		src/oops/assimilation/LocalEnsembleSolver.h
+0 −2		src/oops/base/GetValuePerts.h
+11 −8		src/oops/base/GetValueTLADs.h
+34 −14		src/oops/base/Increment.h
+0 −211		src/oops/base/ObsFilter.h
+0 −297		src/oops/base/ObsFilters.h
+57 −22		src/oops/base/Observer.h
+4 −0		src/oops/base/Observers.h
+26 −5		src/oops/base/ObserversTLAD.h
+0 −3		src/oops/base/PostBase.h
+0 −4		src/oops/base/PostTimer.cc
+1 −6		src/oops/base/PostTimer.h
+0 −34		src/oops/base/PostTimerParameters.h
+1 −1		src/oops/base/WeightedDiffTLAD.h
+0 −22		src/oops/base/instantiateObsFilterFactory.h
+1 −1		src/oops/base/variables_mod.F90
+0 −80		src/oops/generic/GeoVaLsWriter.h
+0 −287		src/oops/generic/ObsFilterBase.h
+0 −34		src/oops/generic/ObsFilterParametersBase.h
+5 −5		src/oops/generic/UnstructuredInterpolator.cc
+81 −0		src/oops/interface/ObsFilter.h
+0 −132		src/oops/interface/ObsFilterBase.h
+0 −2		src/oops/runs/ControlPert.h
+2 −2		src/oops/runs/ExternalDFI.h
+0 −2		src/oops/runs/HofX3D.h
+1 −3		src/oops/runs/HofX4D.h
+0 −2		src/oops/runs/LocalEnsembleDA.h
+0 −2		src/oops/runs/Variational.h
+2 −2		src/oops/util/FieldSetHelpers.cc
+1 −1		src/oops/util/abor1_ftn.F90
+2 −1		src/oops/util/datetime_mod.F90
+1 −1		src/oops/util/duration_mod.F90
+4 −4		src/test/base/PostTimer.h
+3 −3		src/test/generic/LocalInterpolator.h
+3 −3		src/test/interface/UnstructuredInterpolator.h
+0 −1		.gitattributes
+9 −4		src/soca/Fields/Fields.cc
+4 −7		src/soca/Fields/FieldsMetadata.cc
+3 −4		src/soca/Fields/FieldsMetadata.h
+85 −37		src/soca/Fields/soca_fields_metadata_mod.F90
+159 −17		src/soca/Fields/soca_fields_mod.F90
+2 −4		src/soca/Geometry/soca_geom.interface.F90
+10 −10		src/soca/Increment/soca_increment_mod.F90
+41 −45		src/soca/LinearVariableChange/Balance/soca_balance_mod.F90
+12 −5		src/soca/LinearVariableChange/BkgErr/soca_bkgerr_mod.F90
+18 −10		src/soca/LinearVariableChange/BkgErrGodas/soca_bkgerrgodas_mod.F90
+8 −8		src/soca/LinearVariableChange/util/soca_bkgerrutil_mod.F90
+12 −1		src/soca/ModelData/ModelData.h
+4 −4		src/soca/SaberBlocks/BkgErrFilt/BkgErrFilt.cc
+2 −2		src/soca/Utils/OceanSmoother.h
+6 −7		src/soca/VariableChange/Model2GeoVaLs/Model2GeoVaLs.F90
+15 −15		src/soca/VariableChange/Soca2Cice/soca_soca2cice_mod.F90
+3 −5		src/soca/VariableChange/VariableChange.cc
+8 −1		test/CMakeLists.txt
+2 −2		test/Data/36x17x25/restarts/cice.res.nc
+2 −2		test/Data/72x35x25/ice.bkgerror.nc
+2 −2		test/Data/72x35x25/restarts/cice.res.nc
+3 −0		test/Data/72x35x25/restarts/gdas.ice.t12z.inst.f006.nc
+2 −2		test/Data/72x35x25/restarts_ens/cice.res.ens.1.nc
+2 −2		test/Data/72x35x25/restarts_ens/cice.res.ens.2.nc
+2 −2		test/Data/72x35x25/restarts_ens/cice.res.ens.3.nc
+2 −2		test/Data/72x35x25/restarts_ens/cice.res.ens.4.nc
+108 −101		test/Data/fields_metadata.yml
+3 −3		test/executables/TestOceanSmoother.cc
+32 −7		test/testinput/3dhyb.yml
+39 −8		test/testinput/3dhyb_diffusion.yml
+31 −9		test/testinput/3dhybfgat_pseudo.yml
+34 −7		test/testinput/3dvar.yml
+34 −6		test/testinput/3dvar_lowres.yml
+179 −0		test/testinput/3dvar_moreice.yml
+22 −9		test/testinput/3dvar_nicas.yml
+23 −7		test/testinput/3dvarfgat_pseudo.yml
+17 −5		test/testinput/4denvar.yml
+22 −6		test/testinput/4dhybenvar.yml
+25 −7		test/testinput/4dvar_htlm.yml
+23 −7		test/testinput/4dvar_identity.yml
+16 −2		test/testinput/addincrement.yml
+19 −5		test/testinput/convertincrement.yml
+8 −1		test/testinput/convertstate.yml
+15 −8		test/testinput/convertstate_changevar.yml
+8 −2		test/testinput/convertstate_soca2cice.yml
+11 −2		test/testinput/diffstates.yml
+13 −3		test/testinput/dirac_diffusion.yml
+13 −3		test/testinput/dirac_diffusion_lowres.yml
+12 −6		test/testinput/dirac_soca_cor_nicas_scales.yml
+19 −7		test/testinput/dirac_soca_cov.yml
+19 −6		test/testinput/dirac_socahyb_cov.yml
+11 −1		test/testinput/ensmeanandvariance.yml
+31 −3		test/testinput/enspert.yml
+11 −3		test/testinput/ensrecenter.yml
+13 −1		test/testinput/forecast_identity.yml
+7 −1		test/testinput/forecast_pseudo.yml
+24 −15		test/testinput/gen_hybrid_linear_model_coeffs.yml
+8 −1		test/testinput/geometry_iterator_2d.yml
+18 −4		test/testinput/getvalues.yml
+35 −16		test/testinput/hofx_3d.yml
+7 −1		test/testinput/hofx_4d_pseudo.yml
+21 −3		test/testinput/hofx_oasim_3d.yml
+9 −1		test/testinput/hybridgain.yml
+14 −2		test/testinput/increment.yml
+10 −2		test/testinput/letkf.yml
+9 −1		test/testinput/letkf_split_observer.yml
+9 −1		test/testinput/letkf_split_solver.yml
+29 −20		test/testinput/linearization_error.yml
+12 −1		test/testinput/makeobs.yml
+7 −2		test/testinput/oceanSmoother.yml
+14 −18		test/testinput/parameters_bump_cor_nicas.yml
+15 −8		test/testinput/parameters_bump_cor_nicas_scales.yml
+2 −2		test/testinput/parameters_bump_cov.yml
+10 −9		test/testinput/parameters_bump_loc.yml
+7 −2		test/testinput/parameters_diffusion.yml
+6 −1		test/testinput/parameters_diffusion_lowres.yml
+16 −5		test/testinput/parametric_stddev.yml
+15 −8		test/testinput/setcorscales.yml
+25 −4		test/testinput/sqrtvertloc.yml
+17 −2		test/testinput/state.yml
+29 −0		test/testinput/state_moreice.yml
+13 −4		test/testinput/varchange_ana2model.yml
+20 −3		test/testinput/varchange_balance.yml
+12 −3		test/testinput/varchange_balance_TSSSH.yml
+20 −3		test/testinput/varchange_bkgerrgodas.yml
+13 −3		test/testinput/varchange_bkgerrsoca.yml
+13 −3		test/testinput/varchange_bkgerrsoca_stddev.yml
+56 −0		test/testref/3dvar_moreice.test
+3 −5		test/testref/convertincrement.test
+24 −24		test/testref/convertstate_soca2cice.test
+2 −4		test/testref/hofx_3d.test
+1 −1		tutorial/tutorial_tools.sh
+4 −4		src/CMakeLists.txt
+1 −4		src/OceanConversions/OceanConversions.interface.h
+1 −1		src/mo/control2analysis_varchange.cc
+12 −12		src/mo/eval_air_density.cc
+6 −6		src/mo/eval_air_pressure.cc
+4 −3		src/mo/eval_air_pressure_levels.cc
+20 −16		src/mo/eval_air_temperature.cc
+40 −36		src/mo/eval_dry_air_density.cc
+6 −6		src/mo/eval_hydrostatic_balance.cc
+13 −12		src/mo/eval_moisture_control.cc
+11 −7		src/mo/eval_moisture_incrementing_operator.cc
+9 −5		src/mo/eval_relative_humidity.cc
+6 −6		src/mo/eval_surface_pressure.cc
+9 −9		src/mo/eval_surface_temperature.cc
+14 −14		src/mo/eval_surface_wind.cc
+2 −1		src/mo/eval_total_relative_humidity.cc
+16 −12		src/mo/eval_virtual_potential_temperature.cc
+174 −16		src/mo/eval_water_vapor_mixing_ratio.cc
+39 −0		src/mo/eval_water_vapor_mixing_ratio.h
+7 −5		src/mo/model2geovals_varchange.cc
+4 −4		src/mo/model2geovals_varchange.h
+7 −7		src/vader/DefaultCookbook.h
+0 −4		src/vader/RecipeBase.h
+0 −10		src/vader/recipe.cc
+1 −4		src/vader/recipes/AirDensityLevelsMinusOne.h
+4 −2		src/vader/recipes/AirDensityLevelsMinusOne_A.cc
+4 −2		src/vader/recipes/AirDensityLevelsMinusOne_B.cc
+4 −5		src/vader/recipes/AirPotentialTemperature_A.cc
+2 −2		src/vader/recipes/AirPotentialTemperature_B.cc
+8 −6		src/vader/recipes/AirPressureAtInterface_A.cc
+2 −2		src/vader/recipes/AirPressureAtInterface_C.cc
+4 −2		src/vader/recipes/AirPressureExtendedUpByOne_A.cc
+2 −2		src/vader/recipes/AirTemperature.h
+2 −2		src/vader/recipes/AirTemperature_A.cc
+4 −3		src/vader/recipes/AirTemperature_B.cc
+10 −6		src/vader/recipes/AirVirtualTemperature_A.cc
+2 −5		src/vader/recipes/DryAirDensityLevelsMinusOne.h
+4 −2		src/vader/recipes/DryAirDensityLevelsMinusOne_A.cc
+1 −4		src/vader/recipes/EastwardWindAt10m.h
+8 −5		src/vader/recipes/EastwardWindAt10m_A.cc
+2 −5		src/vader/recipes/HydrostaticExnerLevels.h
+3 −3		src/vader/recipes/HydrostaticExnerLevels_A.cc
+1 −4		src/vader/recipes/NorthwardWindAt10m.h
+8 −5		src/vader/recipes/NorthwardWindAt10m_A.cc
+0 −3		src/vader/recipes/ParticulateMatter2p5_A.cc
+7 −6		src/vader/recipes/RelativeHumidity_A.cc
+2 −2		src/vader/recipes/SurfaceAirPressure_A.cc
+7 −3		src/vader/recipes/TotalRelativeHumidity_A.cc
+7 −3		src/vader/recipes/TotalWater_A.cc
+1 −4		src/vader/recipes/VirtualPotentialTemperature.h
+4 −3		src/vader/recipes/VirtualPotentialTemperature_A.cc
+5 −3		src/vader/recipes/VirtualPotentialTemperature_B.cc
+4 −4		src/vader/recipes/WaterVaporMixingRatioWrtMoistAirAndCondensedWater2m_A.cc
+1 −1		src/vader/recipes/WaterVaporMixingRatioWrtMoistAirAndCondensedWater_A.cc
+5 −5		src/vader/recipes/WindReductionFactorAt10m_A.cc
+0 −9		src/vader/vader.cc
+2 −2		test/testdata/aero6_gauss_state_F12.nc
+2 −2		test/testdata/air_density_levels_minus_one_A.nc
+2 −2		test/testdata/air_density_levels_minus_one_B.nc
+2 −2		test/testdata/dry_air_density_levels_minus_one_A.nc
+2 −2		test/testdata/gauss_state_F12.nc
+11 −0		test/testdata/rename_part4.sh
+2 −2		test/testdata/rrfs_sd_gauss_state_F12.nc
+2 −2		test/testdata/wind_at_10m_A.nc
+1 −1		test/testinput/vader_AirDensityLevelsMinusOne_A.yaml
+1 −1		test/testinput/vader_AirDensityLevelsMinusOne_B.yaml
+1 −1		test/testinput/vader_AirTemperature_A.yaml
+3 −3		test/testinput/vader_DryAirDensityLevelsMinusOne_A.yaml
+1 −1		test/testinput/vader_HydrostaticExnerLevels_A.yaml
+1 −1		test/testinput/vader_TotalWater_A.yaml
+1 −1		test/testinput/vader_VirtualPotentialTemperature_A.yaml
+1 −1		test/testinput/vader_VirtualPotentialTemperature_B.yaml
+2 −2		test/testinput/vader_WaterVaporMixingRatioWrtMoistAirAndCondensedWater2m_A.yaml
+1 −1		test/testinput/vader_WaterVaporMixingRatioWrtMoistAirAndCondensedWater_A.yaml
+1 −1		test/testinput/vader_uwind_at_10m_A.yaml
+1 −1		test/testinput/vader_vwind_at_10m_A.yaml