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Workflow B: alternative query structures for B.1 three-hop #312

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karafecho opened this issue Sep 30, 2021 · 0 comments
Open

Workflow B: alternative query structures for B.1 three-hop #312

karafecho opened this issue Sep 30, 2021 · 0 comments
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@karafecho
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karafecho commented Sep 30, 2021

This issue is to consider alternative query structures for the three-hop B.1 query. Possibilites that were suggested during the Sept 2021 mini-relay session include:

  • Replace DiseaseOrPhenotypicFeature with Disease OR Phenotypic Feature
  • Replace Gene with Protein
  • Remove Gene node entirely
  • Replace biolink:related_to with biolink:treats or biolink:prevents

Suggestions were also made to continue work on the former B.5 and B.6 queries. For instance,

  • DILI - DiseaseOrPhenotypicFeature - [set of five genes associated with increased susceptibility to DILI]
  • Drugs associated with DILI - Gene - ChemicalEntity

Note that the B.5 and B.6 work would be for after the Dec demo.

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