update example batch script to run with slurm for Theia

NCAR · May 29, 2019 · 8adb1a7 · 8adb1a7
1 parent 6ea8677
commit 8adb1a7
Showing 1 changed file with 16 additions and 17 deletions.
diff --git a/scm/etc/gmtb_scm_run.py → scm/etc/gmtb_scm_slurm_example.py b/scm/etc/gmtb_scm_run.py → scm/etc/gmtb_scm_slurm_example.py
@@ -3,35 +3,34 @@
 from subprocess import Popen, PIPE
 import time
 
-proc = Popen('qsub', shell=True, stdin=PIPE, stdout=PIPE, stderr=PIPE, close_fds=True)
+proc = Popen('sbatch', shell=True, stdin=PIPE, stdout=PIPE, stderr=PIPE, close_fds=True)
 
 ### User-editable section -- See https://theiadocs.rdhpcs.noaa.gov/wikis/theiadocs/doku.php?id=running_and_monitoring_jobs for appropriate values ###
 job_name = "test_job"
 account = "gmtb"
-walltime = "0:20:00"
-processors = "procs=1"
+walltime = "20"
+processors = "1"
 queue = "batch"
-command = "./gmtb_scm twpice"
+command = "./run_gmtb_scm.py -c twpice"
 email_addr = "Grant.Firl@noaa.gov"
-email_occasion = "abe"
+email_occasion = "BEGIN,END,FAIL"
 serial_mem = "512M"
 working_dir = "../bin"
 ### End User-editable section ###
 
 
 job_string = """#!/bin/bash
-#PBS -N %s
-#PBS -A %s
-#PBS -l walltime=%s
-#PBS -l %s
-#PBS -o ./%s.out
-#PBS -e ./%s.err
-#PBS -q %s
-#PBS -M %s
-#PBS -m %s
-#PBS -l vmem=%s
-#PBS -d %s
-#PBS -V
+#SBATCH -J %s
+#SBATCH -A %s
+#SBATCH --time=%s
+#SBATCH -n %s
+#SBATCH -o ./%s.out
+#SBATCH -e ./%s.err
+#SBATCH -q %s
+#SBATCH --mail-user=%s
+#SBATCH --mail-type=%s
+#SBATCH --mem=%s
+#SBATCH -D%s
 %s""" % (job_name, account, walltime, processors, job_name, job_name, queue, email_addr, email_occasion, serial_mem, working_dir, command)
 
 # Send job_string to qsub