NAMESPACE

# Generated by roxygen2: do not edit by hand

export(clean_sequences)
export(compare_groups)
export(compare_substances)
export(download_homd_data)
export(load_data)
export(parse_megan)
export(plot_species_substance)
export(run_blast)
export(species_table)
export(visualize_taxonomy)
import(rBLAST)
importFrom(Biostrings,readDNAStringSet)
importFrom(ExperimentHub,ExperimentHub)
importFrom(SummarizedExperiment,assay)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,theme_minimal)
importFrom(httr,GET)
importFrom(httr,POST)
importFrom(httr,content)
importFrom(httr,status_code)
importFrom(jsonlite,fromJSON)
importFrom(magrittr,"%>%")
importFrom(phyloseq,otu_table)
importFrom(phyloseq,phyloseq)
importFrom(phyloseq,sample_data)
importFrom(phyloseq,tax_table)
importFrom(plotly,ggplotly)
importFrom(readr,read_csv)
importFrom(readxl,read_excel)
importFrom(rentrez,entrez_search)
importFrom(rentrez,entrez_summary)
importFrom(reshape2,acast)
importFrom(stats,TukeyHSD)
importFrom(stats,aov)
importFrom(stats,t.test)
importFrom(tidyr,replace_na)
importFrom(vegan,adonis2)
importFrom(vegan,vegdist)
importFrom(xml2,read_xml)
importFrom(xml2,xml_find_all)
importFrom(xml2,xml_text)