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Registry.xml
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<?xml version="1.0"?>
<registry model="mpas" core="init_atmosphere" core_abbrev="init_atm" version="8.0.1">
<!-- **************************************************************************************** -->
<!-- ************************************** Dimensions ************************************** -->
<!-- **************************************************************************************** -->
<dims>
<dim name="nCells"
description="The number of Voronoi cells in the primal mesh"/>
<dim name="nEdges"
description="The number of cell faces (edges) in the primal and dual meshes"/>
<dim name="maxEdges"
description="The largest number of neighbors that a primal mesh cell may have"/>
<dim name="maxEdges2"
description="Twice the value of maxEdges"/>
<dim name="nVertices"
description="The number of Delaunay triangles in the dual mesh, equivalent to the number of cell corners in the primal mesh"/>
<dim name="TWO" definition="2"
description="A constant value of 2"/>
<dim name="THREE" definition="3"
description="A constant value of 3"/>
<dim name="vertexDegree"
description="The number of edges or cells that meet at vertices"/>
<dim name="FIFTEEN" definition="15"
description="A constant value of 15"/>
<dim name="TWENTYONE" definition="21"
description="A constant value of 21"/>
<dim name="R3" definition="3"
description="The dimensionality of vectors in $\Re^3$"/>
<dim name="nVertLevels" definition="namelist:config_nvertlevels"
description="The number of atmospheric layers"/>
<dim name="nSoilLevels" definition="namelist:config_nsoillevels"
description="The number of soil layers used by the land-surface scheme"/>
<dim name="nFGLevels" definition="namelist:config_nfglevels"
description="The number of first-guess atmospheric layers"/>
<dim name="nFGSoilLevels" definition="namelist:config_nfgsoillevels"
description="The number of first-guess soil layers"/>
<dim name="nVertLevelsP1" definition="nVertLevels+1"
description="The number of atmospheric levels, always one more than the number of layers"/>
<dim name="nMonths" definition="namelist:config_months"
description="The number of months in a year"/>
</dims>
<!-- **************************************************************************************** -->
<!-- ************************************** Namelists *************************************** -->
<!-- **************************************************************************************** -->
<nml_record name="nhyd_model" in_defaults="true">
<nml_option name="config_init_case" type="integer" default_value="7"
units="-"
description="Type of initial conditions to create: \newline
1 = Jablonowski & Williamson barolinic wave (no initial perturbation), \newline
2 = Jablonowski & Williamson barolinic wave (with initial perturbation), \newline
3 = Jablonowski & Williamson barolinic wave (with normal-mode perturbation), \newline
4 = squall line, \newline
5 = super-cell, \newline
6 = mountain wave, \newline
7 = real-data initial conditions from, e.g., GFS, \newline
8 = surface field (SST, sea-ice) update file for use with real-data simulations \newline
9 = lateral boundary conditions update file for use with real-data simulations \newline
13 = CAM-MPAS 3-d grid with specified topography and zeta levels"
possible_values="1 -- 9"/>
<nml_option name="config_calendar_type" type="character" default_value="gregorian" in_defaults="false"
units="-"
description="Simulation calendar type"
possible_values="`gregorian',`gregorian_noleap'"/>
<nml_option name="config_start_time" type="character" default_value="2010-10-23_00:00:00"
units="-"
description="Time to begin processing first-guess data (cases 7, 8, and 9 only)"
possible_values="`YYYY-MM-DD_hh:mm:ss'"/>
<nml_option name="config_stop_time" type="character" default_value="2010-10-23_00:00:00"
units="-"
description="Time to end processing first-guess data (cases 8 and 9 only)"
possible_values="`YYYY-MM-DD_hh:mm:ss'"/>
<nml_option name="config_theta_adv_order" type="integer" default_value="3"
units="-"
description="Horizontal advection order for theta"
possible_values="2, 3, or 4"/>
<nml_option name="config_coef_3rd_order" type="real" default_value="0.25"
units="-"
description="Upwinding coefficient in the 3rd order advection scheme"
possible_values="0 $\leq$ config_coef_3rd_order $\leq$ 1"/>
<nml_option name="config_num_halos" type="integer" default_value="2" in_defaults="false"
units="-"
description="Number of halo layers for fields"
possible_values="Integer values, typically 2 or 3; DO NOT CHANGE"/>
<nml_option name="config_interface_projection" type="character" default_value="linear_interpolation"
units="-"
description="projecting layer values to the interface, linear vertical interpolation or integral"
possible_values="'linear_interpolation' or 'layer_integral' (layer average value)"/>
</nml_record>
<nml_record name="dimensions" in_defaults="true">
<nml_option name="config_nvertlevels" type="integer" default_value="55"
units="-"
description="The number of vertical levels to be used in the model"
possible_values="Positive integer values"/>
<nml_option name="config_nsoillevels" type="integer" default_value="4"
units="-"
description="The number of vertical soil levels needed by LSM in the model (case 7 only)"
possible_values="Positive integer values"/>
<nml_option name="config_nfglevels" type="integer" default_value="38"
units="-"
description="The number of atmospheric levels (including surface and sea-level) in the first-guess dataset (cases 7 and 9 only)"
possible_values="Positive integer values"/>
<nml_option name="config_nfgsoillevels" type="integer" default_value="4"
units="-"
description="The number of vertical soil levels in the first-guess dataset (case 7 only)"
possible_values="Positive integer values"/>
<nml_option name="config_months" type="integer" default_value="12" in_defaults="false"
units="-"
description="The number of months in a year"
possible_values="Positive integer values"/>
</nml_record>
<nml_record name="data_sources" in_defaults="true">
<nml_option name="config_geog_data_path" type="character" default_value="/glade/work/wrfhelp/WPS_GEOG/"
units="-"
description="Path to the WPS static data files (case 7 only)"
possible_values="Any valid path"/>
<nml_option name="config_met_prefix" type="character" default_value="CFSR"
units="-"
description="Filename prefix of ungrib intermediate file to use for initial conditions (cases 7 and 9 only)"
possible_values="Any alpha-numeric string"/>
<nml_option name="config_sfc_prefix" type="character" default_value="SST"
units="-"
description="Filename prefix of ungrib intermediate file to use for SST and sea-ice (cases 7 and 8 only)"
possible_values="Any alpha-numeric string"/>
<nml_option name="config_fg_interval" type="integer" default_value="86400"
units="-"
description="Interval between intermediate files (cases 8 and 9 only)"
possible_values="[DDD_]hh:mm:ss"/>
<nml_option name="config_landuse_data" type="character" default_value="MODIFIED_IGBP_MODIS_NOAH"
units="-"
description="The land use classification to use (case 7 only)"
possible_values="`USGS' or `MODIFIED_IGBP_MODIS_NOAH'"/>
<nml_option name="config_topo_data" type="character" default_value="GMTED2010"
units="-"
description="The topography dataset to use for the model terrain and for GWDO static fields (case 7 only)"
possible_values="`GTOPO30' or `GMTED2010'"/>
<nml_option name="config_vegfrac_data" type="character" default_value="MODIS"
units="-"
description="The climatological monthly vegetation fraction dataset to use (case 7 only)"
possible_values="`MODIS' or `NCEP'"/>
<nml_option name="config_albedo_data" type="character" default_value="MODIS"
units="-"
description="The climatological monthly albedo dataset to use (case 7 only)"
possible_values="`MODIS' or `NCEP'"/>
<nml_option name="config_maxsnowalbedo_data" type="character" default_value="MODIS"
units="-"
description="The maximum snow albedo dataset to use (case 7 only)"
possible_values="`MODIS' or `NCEP'"/>
<nml_option name="config_supersample_factor" type="integer" default_value="3"
units="-"
description="The supersampling factor to be used for MODIS maximum snow albedo and monthly albedo datasets (case 7 only)"
possible_values="Positive integer values"/>
<nml_option name="config_use_spechumd" type="logical" default_value="false"
units="-"
description="Whether to use specific-humidity as the first-guess moisture variable. If this option is False, relative humidity will be used."
possible_values="true or false"/>
</nml_record>
<nml_record name="vertical_grid" in_defaults="true">
<nml_option name="config_ztop" type="real" default_value="30000.0"
units="m"
description="Model top height"
possible_values="Positive real values"/>
<nml_option name="config_nsmterrain" type="integer" default_value="1"
units="-"
description="Number of smoothing passes to apply to the interpolated terrain field"
possible_values="Non-negative integer values"/>
<nml_option name="config_smooth_surfaces" type="logical" default_value="true"
units="-"
description="Whether to smooth zeta surfaces"
possible_values="true or false"/>
<nml_option name="config_dzmin" type="real" default_value="0.3"
units="-"
description="Minimum thickness of layers as a fraction of nominal thickness"
possible_values="Real values in the interval (0,1)"/>
<nml_option name="config_nsm" type="integer" default_value="30"
units="-"
description="Maximum number of smoothing passes for coordinate surfaces"
possible_values="Positive integer values"/>
<nml_option name="config_tc_vertical_grid" type="logical" default_value="true"
units="-"
description="Whether to use the vertical layer profile that was developed for use in real-time TC experiments"
possible_values="true or false"/>
<nml_option name="config_specified_zeta_levels" type="character" default_value="" in_defaults="false"
units="-"
description="The name of a text file containing a list of vertical coordinate (zeta) values in increasing order at layer interfaces."
possible_values="Any valid filename"/>
<nml_option name="config_blend_bdy_terrain" type="logical" default_value="false"
units="-"
description="Whether to blend terrain along domain boundaries with first-guess terrain. Only useful for limited-area domains."
possible_values="true or false"/>
</nml_record>
<nml_record name="interpolation_control" in_defaults="true">
<nml_option name="config_extrap_airtemp" type="character" default_value="lapse-rate"
units="-"
description="Method of extrapolation of air temperature above/below first-guess levels."
possible_values="`constant' (last valid value), `linear' (linear extrapolation based on last two values), `lapse-rate' (0.0065 K/m from last valid value)"/>
</nml_record>
<nml_record name="preproc_stages" in_defaults="true">
<nml_option name="config_static_interp" type="logical" default_value="true"
units="-"
description="Whether to interpolate WPS static data (case 7 only)"
possible_values="true or false"/>
<nml_option name="config_native_gwd_static" type="logical" default_value="true"
units="-"
description="Whether to recompute subgrid-scale orography statistics directly on the native MPAS mesh (case 7 only)"
possible_values="true or false"/>
<nml_option name="config_gwd_cell_scaling" type="real" default_value="1.0" in_defaults="false"
units="-"
description="Scaling factor for the effective grid cell diameter used in computation of GWD static fields"
possible_values="Positive real values"/>
<nml_option name="config_vertical_grid" type="logical" default_value="true"
units="-"
description="Whether to generate vertical grid"
possible_values="true or false"/>
<nml_option name="config_met_interp" type="logical" default_value="true"
units="-"
description="Whether to interpolate first-guess fields from intermediate file"
possible_values="true or false"/>
<nml_option name="config_input_sst" type="logical" default_value="false"
units="-"
description="Whether to re-compute SST and sea-ice fields from surface input data set; should be set to .true. when running case 8"
possible_values="true or false"/>
<nml_option name="config_frac_seaice" type="logical" default_value="true"
units="-"
description="Whether to switch sea-ice threshold from 0.5 to 0.02"
possible_values="true or false"/>
</nml_record>
<nml_record name="physics" in_defaults="false">
<nml_option name="config_tsk_seaice_threshold" type="real" default_value="100." units="K"
description="surface temperature threshold below which water points are set to seaice points"
possible_values="Positive real values"/>
</nml_record>
<nml_record name="io" in_defaults="true">
<nml_option name="config_pio_num_iotasks" type="integer" default_value="0"
units="-"
description="Number of tasks to perform file I/O"
possible_values="Integer valued, 0 $\leq$ config_pio_num_iotasks $\leq$ \# MPI tasks, 0 indicates all tasks perform I/O"/>
<nml_option name="config_pio_stride" type="integer" default_value="1"
units="-"
description="Stride between file I/O tasks"
possible_values="Integer valued, $\leq$ (\# MPI tasks) / config_pio_num_iotasks"/>
</nml_record>
<nml_record name="decomposition" in_defaults="true">
<nml_option name="config_block_decomp_file_prefix" type="character" default_value="x1.40962.graph.info.part."
units="-"
description="Prefix of graph decomposition file, to be suffixed with the MPI task count"
possible_values="Any valid filename"/>
<nml_option name="config_number_of_blocks" type="integer" default_value="0" in_defaults="false"
units="-"
description="Number of blocks to assign to each MPI task"
possible_values="Positive integer values"/>
<nml_option name="config_explicit_proc_decomp" type="logical" default_value="false" in_defaults="false"
units="-"
description="Whether to use an explicit mapping of blocks to MPI tasks"
possible_values=".true. or .false."/>
<nml_option name="config_proc_decomp_file_prefix" type="character" default_value="graph.info.part." in_defaults="false"
units="-"
description="Prefix of block mapping file"
possible_values="Any valid filename"/>
</nml_record>
<!-- **************************************************************************************** -->
<!-- ************************************** Packages ************************************** -->
<!-- **************************************************************************************** -->
<packages>
<package name="initial_conds" description="Used by test cases that produce initial conditions."/>
<package name="sfc_update" description="Used by test cases that produce surface updates."/>
<package name="lbcs" description="Active when lateral boundary conditions are interpolated and written."/>
<package name="gwd_stage_in" description="Active only if GWD static fields are be generated and other static fields are not being generated"/>
<package name="gwd_stage_out" description="Active only if GWD static fields are be generated and other static fields are not being generated"/>
<package name="vertical_stage_in" description="Active only if a vertical grid is being generated"/>
<package name="vertical_stage_out" description="Active only if a vertical grid is being generated"/>
<package name="met_stage_in" description="Active only if meteorological fields are being interpolated"/>
<package name="met_stage_out" description="Active only if meteorological fields are being interpolated"/>
<package name="first_guess_field" description="3-d atmospheric or land-surface fields on first-guess levels"/>
</packages>
<!-- **************************************************************************************** -->
<!-- *************************************** Streams **************************************** -->
<!-- **************************************************************************************** -->
<streams>
<stream name="input"
type="input"
filename_template="x1.40962.grid.nc"
input_interval="initial_only"
immutable="true">
<var name="latCell"/>
<var name="lonCell"/>
<var name="xCell"/>
<var name="yCell"/>
<var name="zCell"/>
<var name="indexToCellID"/>
<var name="latEdge"/>
<var name="lonEdge"/>
<var name="xEdge"/>
<var name="yEdge"/>
<var name="zEdge"/>
<var name="indexToEdgeID"/>
<var name="latVertex"/>
<var name="lonVertex"/>
<var name="xVertex"/>
<var name="yVertex"/>
<var name="zVertex"/>
<var name="indexToVertexID"/>
<var name="cellsOnEdge"/>
<var name="nEdgesOnCell"/>
<var name="nEdgesOnEdge"/>
<var name="edgesOnCell"/>
<var name="edgesOnEdge"/>
<var name="weightsOnEdge"/>
<var name="dvEdge"/>
<var name="dcEdge"/>
<var name="angleEdge"/>
<var name="areaCell"/>
<var name="areaTriangle"/>
<var name="cellsOnCell"/>
<var name="verticesOnCell"/>
<var name="verticesOnEdge"/>
<var name="edgesOnVertex"/>
<var name="cellsOnVertex"/>
<var name="kiteAreasOnVertex"/>
<var name="meshDensity"/>
<var name="nominalMinDc"/>
<var name="bdyMaskCell"/>
<var name="bdyMaskEdge"/>
<var name="bdyMaskVertex"/>
<var name="edgeNormalVectors" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="localVerticalUnitVectors" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="cellTangentPlane" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="fEdge" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="fVertex" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="ter" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="landmask" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="mminlu" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="isice_lu" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="iswater_lu" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="ivgtyp" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="isltyp" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="snoalb" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="soiltemp" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="greenfrac" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="shdmin" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="shdmax" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="albedo12m" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="var2d" packages="vertical_stage_in;met_stage_in"/>
<var name="con" packages="vertical_stage_in;met_stage_in"/>
<var name="oa1" packages="vertical_stage_in;met_stage_in"/>
<var name="oa2" packages="vertical_stage_in;met_stage_in"/>
<var name="oa3" packages="vertical_stage_in;met_stage_in"/>
<var name="oa4" packages="vertical_stage_in;met_stage_in"/>
<var name="ol1" packages="vertical_stage_in;met_stage_in"/>
<var name="ol2" packages="vertical_stage_in;met_stage_in"/>
<var name="ol3" packages="vertical_stage_in;met_stage_in"/>
<var name="ol4" packages="vertical_stage_in;met_stage_in"/>
<var name="deriv_two" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="defc_a" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="defc_b" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="cell_gradient_coef_x" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="cell_gradient_coef_y" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="coeffs_reconstruct" packages="gwd_stage_in;vertical_stage_in;met_stage_in"/>
<var name="cf1" packages="met_stage_in"/>
<var name="cf2" packages="met_stage_in"/>
<var name="cf3" packages="met_stage_in"/>
<var name="zgrid" packages="met_stage_in"/>
<var name="rdzw" packages="met_stage_in"/>
<var name="dzu" packages="met_stage_in"/>
<var name="rdzu" packages="met_stage_in"/>
<var name="fzm" packages="met_stage_in"/>
<var name="fzp" packages="met_stage_in"/>
<var name="zxu" packages="met_stage_in"/>
<var name="zz" packages="met_stage_in"/>
<var name="zb" packages="met_stage_in"/>
<var name="zb3" packages="met_stage_in"/>
<var name="dss" packages="met_stage_in"/>
</stream>
<stream name="output"
type="output"
filename_template="x1.40962.init.nc"
output_interval="initial_only"
packages="initial_conds"
immutable="true">
<var name="initial_time" packages="met_stage_out"/>
<var name="xtime"/>
<var name="latCell"/>
<var name="lonCell"/>
<var name="xCell"/>
<var name="yCell"/>
<var name="zCell"/>
<var name="indexToCellID"/>
<var name="latEdge"/>
<var name="lonEdge"/>
<var name="xEdge"/>
<var name="yEdge"/>
<var name="zEdge"/>
<var name="indexToEdgeID"/>
<var name="latVertex"/>
<var name="lonVertex"/>
<var name="xVertex"/>
<var name="yVertex"/>
<var name="zVertex"/>
<var name="indexToVertexID"/>
<var name="cellsOnEdge"/>
<var name="nEdgesOnCell"/>
<var name="nEdgesOnEdge"/>
<var name="edgesOnCell"/>
<var name="edgesOnEdge"/>
<var name="weightsOnEdge"/>
<var name="dvEdge"/>
<var name="dcEdge"/>
<var name="angleEdge"/>
<var name="areaCell"/>
<var name="areaTriangle"/>
<var name="cellsOnCell"/>
<var name="verticesOnCell"/>
<var name="verticesOnEdge"/>
<var name="edgesOnVertex"/>
<var name="cellsOnVertex"/>
<var name="kiteAreasOnVertex"/>
<var name="meshDensity"/>
<var name="nominalMinDc"/>
<var name="bdyMaskCell"/>
<var name="bdyMaskEdge"/>
<var name="bdyMaskVertex"/>
<var name="edgeNormalVectors"/>
<var name="localVerticalUnitVectors"/>
<var name="cellTangentPlane"/>
<var name="fEdge"/>
<var name="fVertex"/>
<var name="ter"/>
<var name="landmask"/>
<var name="mminlu"/>
<var name="isice_lu"/>
<var name="iswater_lu"/>
<var name="ivgtyp"/>
<var name="isltyp"/>
<var name="snoalb"/>
<var name="soiltemp"/>
<var name="greenfrac"/>
<var name="shdmin"/>
<var name="shdmax"/>
<var name="albedo12m"/>
<var name="var2d" packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="con" packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="oa1" packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="oa2" packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="oa3" packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="oa4" packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="ol1" packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="ol2" packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="ol3" packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="ol4" packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="deriv_two"/>
<var name="defc_a"/>
<var name="defc_b"/>
<var name="cell_gradient_coef_x"/>
<var name="cell_gradient_coef_y"/>
<var name="coeffs_reconstruct"/>
<var name="cf1" packages="vertical_stage_out;met_stage_out"/>
<var name="cf2" packages="vertical_stage_out;met_stage_out"/>
<var name="cf3" packages="vertical_stage_out;met_stage_out"/>
<var name="zgrid" packages="vertical_stage_out;met_stage_out"/>
<var name="rdzw" packages="vertical_stage_out;met_stage_out"/>
<var name="dzu" packages="vertical_stage_out;met_stage_out"/>
<var name="rdzu" packages="vertical_stage_out;met_stage_out"/>
<var name="fzm" packages="vertical_stage_out;met_stage_out"/>
<var name="fzp" packages="vertical_stage_out;met_stage_out"/>
<var name="zxu" packages="vertical_stage_out;met_stage_out"/>
<var name="zz" packages="vertical_stage_out;met_stage_out"/>
<var name="zb" packages="vertical_stage_out;met_stage_out"/>
<var name="zb3" packages="vertical_stage_out;met_stage_out"/>
<var name="dss" packages="vertical_stage_out;met_stage_out"/>
<var name="u_init" packages="met_stage_out"/>
<var name="v_init" packages="met_stage_out"/>
<var name="t_init" packages="met_stage_out"/>
<var name="qv_init" packages="met_stage_out"/>
<var_array name="scalars" packages="met_stage_out"/>
<var name="u" packages="met_stage_out"/>
<var name="w" packages="met_stage_out"/>
<var name="dz" packages="met_stage_out"/>
<var name="dzs" packages="met_stage_out"/>
<var name="zs" packages="met_stage_out"/>
<var name="sh2o" packages="met_stage_out"/>
<var name="smois" packages="met_stage_out"/>
<var name="tslb" packages="met_stage_out"/>
<var name="tmn" packages="met_stage_out"/>
<var name="skintemp" packages="met_stage_out"/>
<var name="sst" packages="met_stage_out"/>
<var name="snow" packages="met_stage_out"/>
<var name="snowc" packages="met_stage_out"/>
<var name="snowh" packages="met_stage_out"/>
<var name="xice" packages="met_stage_out"/>
<var name="seaice" packages="met_stage_out"/>
<var name="vegfra" packages="met_stage_out"/>
<var name="sfc_albbck" packages="met_stage_out"/>
<var name="xland" packages="met_stage_out"/>
<var name="rho" packages="met_stage_out"/>
<var name="theta" packages="met_stage_out"/>
<var name="relhum" packages="met_stage_out"/>
<var name="rho_base" packages="met_stage_out"/>
<var name="theta_base" packages="met_stage_out"/>
<var name="surface_pressure" packages="met_stage_out"/>
<var name="precipw" packages="met_stage_out"/>
<var name="h_oml_initial" packages="met_stage_out"/>
<var name="u10" packages="met_stage_out"/>
<var name="v10" packages="met_stage_out"/>
<var name="q2" packages="met_stage_out"/>
<var name="rh2" packages="met_stage_out"/>
<var name="t2m" packages="met_stage_out"/>
</stream>
<stream name="surface"
type="output"
filename_template="x1.40962.sfc_update.nc"
output_interval="86400"
filename_interval="none"
packages="sfc_update"
immutable="true">
<var name="xtime"/>
<var name="sst"/>
<var name="xice"/>
</stream>
<stream name="lbc"
type="output"
filename_template="lbc.$Y-$M-$D_$h.$m.$s.nc"
output_interval="3:00:00"
filename_interval="output_interval"
packages="lbcs"
immutable="true">
<var name="xtime"/>
<var_struct name="lbc_state"/>
</stream>
</streams>
<!-- **************************************************************************************** -->
<!-- ************************************** Variables *************************************** -->
<!-- **************************************************************************************** -->
<var_struct name="mesh" time_levs="1">
<var name="latCell" type="real" dimensions="nCells" units="rad"
description="Latitude of cells"/>
<var name="lonCell" type="real" dimensions="nCells" units="rad"
description="Longitude of cells"/>
<var name="xCell" type="real" dimensions="nCells" units="m"
description="Cartesian x-coordinate of cells"/>
<var name="yCell" type="real" dimensions="nCells" units="m"
description="Cartesian y-coordinate of cells"/>
<var name="zCell" type="real" dimensions="nCells" units="m"
description="Cartesian z-coordinate of cells"/>
<var name="indexToCellID" type="integer" dimensions="nCells" units="-"
description="Mapping from local array index to global cell ID"/>
<var name="latEdge" type="real" dimensions="nEdges" units="rad"
description="Latitude of edges"/>
<var name="lonEdge" type="real" dimensions="nEdges" units="rad"
description="Longitude of edges"/>
<var name="xEdge" type="real" dimensions="nEdges" units="m"
description="Cartesian x-coordinate of edges"/>
<var name="yEdge" type="real" dimensions="nEdges" units="m"
description="Cartesian y-coordinate of edges"/>
<var name="zEdge" type="real" dimensions="nEdges" units="m"
description="Cartesian z-coordinate of edges"/>
<var name="indexToEdgeID" type="integer" dimensions="nEdges" units="-"
description="Mapping from local array index to global edge ID"/>
<var name="latVertex" type="real" dimensions="nVertices" units="rad"
description="Latitude of vertices"/>
<var name="lonVertex" type="real" dimensions="nVertices" units="rad"
description="Longitude of vertices"/>
<var name="xVertex" type="real" dimensions="nVertices" units="m"
description="Cartesian x-coordinate of vertices"/>
<var name="yVertex" type="real" dimensions="nVertices" units="m"
description="Cartesian y-coordinate of vertices"/>
<var name="zVertex" type="real" dimensions="nVertices" units="m"
description="Cartesian z-coordinate of vertices"/>
<var name="indexToVertexID" type="integer" dimensions="nVertices" units="-"
description="Mapping from local array index to global vertex ID"/>
<var name="cellsOnEdge" type="integer" dimensions="TWO nEdges" units="-"
description="IDs of cells divided by an edge"/>
<var name="nEdgesOnCell" type="integer" dimensions="nCells" units="-"
description="Number of edges forming the boundary of a cell"/>
<var name="nEdgesOnEdge" type="integer" dimensions="nEdges" units="-"
description="Number of edges involved in reconstruction of tangential velocity for an edge"/>
<var name="edgesOnCell" type="integer" dimensions="maxEdges nCells" units="-"
description="IDs of edges forming the boundary of a cell"/>
<var name="edgesOnEdge" type="integer" dimensions="maxEdges2 nEdges" units="-"
description="IDs of edges involved in reconstruction of tangential velocity for an edge"/>
<var name="weightsOnEdge" type="real" dimensions="maxEdges2 nEdges" units="-"
description="Weights used in reconstruction of tangential velocity for an edge"/>
<var name="dvEdge" type="real" dimensions="nEdges" units="-"
description="Spherical distance between vertex endpoints of an edge"/>
<var name="dcEdge" type="real" dimensions="nEdges" units="m"
description="Spherical distance between cells separated by an edge"/>
<var name="angleEdge" type="real" dimensions="nEdges" units="rad"
description="Angle between local north and the positive tangential direction of an edge"/>
<var name="areaCell" type="real" dimensions="nCells" units="m^2"
description="Spherical area of a Voronoi cell"/>
<var name="areaTriangle" type="real" dimensions="nVertices" units="m^2"
description="Spherical area of a Delaunay triangle"/>
<var name="edgeNormalVectors" type="real" dimensions="R3 nEdges" units="unitless"
description="Cartesian components of the vector normal to an edge and tangential to the surface of the sphere"/>
<var name="localVerticalUnitVectors" type="real" dimensions="R3 nCells" units="unitless"
description="Cartesian components of the vector pointing in the local vertical direction for a cell"/>
<var name="cellTangentPlane" type="real" dimensions="R3 TWO nCells" units="unitless"
description="Components of a pair of vectors defining the tangent plane at a cell"/>
<var name="cellsOnCell" type="integer" dimensions="maxEdges nCells" units="-"
description="IDs of cells neighboring a cell"/>
<var name="verticesOnCell" type="integer" dimensions="maxEdges nCells" units="-"
description="IDs of vertices (corner points) of a cell"/>
<var name="verticesOnEdge" type="integer" dimensions="TWO nEdges" units="-"
description="IDs of the two vertex endpoints of an edge"/>
<var name="edgesOnVertex" type="integer" dimensions="vertexDegree nVertices" units="-"
description="IDs of the edges that meet at a vertex"/>
<var name="cellsOnVertex" type="integer" dimensions="vertexDegree nVertices" units="-"
description="IDs of the cells that meet at a vertex"/>
<var name="kiteAreasOnVertex" type="real" dimensions="vertexDegree nVertices" units="m^2"
description="Intersection areas between primal (Voronoi) and dual (triangular) mesh cells"/>
<var name="fEdge" type="real" dimensions="nEdges" units="unitless"
description="Coriolis parameter at an edge"/>
<var name="fVertex" type="real" dimensions="nVertices" units="unitless"
description="Coriolis parameter at a vertex"/>
<var name="meshDensity" type="real" dimensions="nCells" units="unitless"
description="Mesh density function (used when generating the mesh) evaluated at a cell"/>
<var name="nominalMinDc" type="real" dimensions="" units="m"
description="Nominal minimum dcEdge value where meshDensity == 1.0"/>
<!-- coefficients for vertical extrapolation to the surface -->
<var name="cf1" type="real" dimensions="" units="unitless"
description="Surface interpolation weight for level k=1 value"/>
<var name="cf2" type="real" dimensions="" units="unitless"
description="Surface interpolation weight for level k=2 value"/>
<var name="cf3" type="real" dimensions="" units="unitless"
description="Surface interpolation weight for level k=3 value"/>
<!-- static terrestrial fields -->
<var name="ter" type="real" dimensions="nCells" units="m"
description="terrain height"/>
<var name="PHIS" type="real" dimensions="nCells" units="m^2 s^{-2}"
description="CAM Surface geopotential"/>
<var name="landmask" type="integer" dimensions="nCells" units="unitless"
description="land-ocean mask (1=land ; 0=ocean)"/>
<var name="ivgtyp" name_in_code="lu_index" type="integer" dimensions="nCells" units="unitless"
description="dominant vegetation category"/>
<var name="mminlu" type="text" dimensions="" units="unitless"
description="land use classification"/>
<var name="isltyp" name_in_code="soilcat_top" type="integer" dimensions="nCells" units="unitless"
description="dominate soil category"/>
<var name="snoalb" type="real" dimensions="nCells" units="unitless"
description="annual maximum snow albedo"/>
<var name="soiltemp" type="real" dimensions="nCells" units="K"
description="annual mean deep soil temperature"/>
<var name="greenfrac" type="real" dimensions="nMonths nCells" units="unitless"
description="monthly-mean climatological greeness fraction"/>
<var name="shdmin" type="real" dimensions="nCells" units="unitless"
description="minimum fractional coverage of annual green vegetation fraction"/>
<var name="shdmax" type="real" dimensions="nCells" units="unitless"
description="maximum fractional coverage of annual green vegetation fraction"/>
<var name="albedo12m" type="real" dimensions="nMonths nCells" units="unitless"
description="monthly-mean climatological surface albedo"/>
<var name="isice_lu" type="integer" dimensions="" units="unitless" default_value="24"
description="Index category for snow/ice"/>
<var name="iswater_lu" type="integer" dimensions="" units="unitless" default_value="16"
description="Index category for water"/>
<!-- GWDO fields -->
<var name="var2d" type="real" dimensions="nCells" units="m"
description="standard deviation of subgrid-scale orography"
packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="con" type="real" dimensions="nCells" units="unitless"
description="orographic convexity"
packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="oa1" type="real" dimensions="nCells" units="unitless"
description="asymmetry of subgrid-scale orography for westerly flow"
packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="oa2" type="real" dimensions="nCells" units="unitless"
description="asymmetry of subgrid-scale orography for southerly flow"
packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="oa3" type="real" dimensions="nCells" units="unitless"
description="asymmetry of subgrid-scale orography for south-westerly flow"
packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="oa4" type="real" dimensions="nCells" units="unitless"
description="asymmetry of subgrid-scale orography for north-westerly flow"
packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="ol1" type="real" dimensions="nCells" units="unitless"
description="effective orographic length for westerly flow"
packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="ol2" type="real" dimensions="nCells" units="unitless"
description="effective orographic length for southerly flow"
packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="ol3" type="real" dimensions="nCells" units="unitles"
description="effective orographic length for south-westerly flow"
packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<var name="ol4" type="real" dimensions="nCells" units="unitless"
description="effective orographic length for north-westerly flow"
packages="gwd_stage_out;vertical_stage_out;met_stage_out"/>
<!-- description of the vertical grid structure -->
<var name="hx" type="real" dimensions="nVertLevelsP1 nCells" units="m"
description="terrain influence in vertical coordinate, $h_s(x,y,\zeta)$ in Klemp (MWR 2011)"
packages="vertical_stage_out;met_stage_out"/>
<var name="zgrid" type="real" dimensions="nVertLevelsP1 nCells" units="m MSL"
description="Geometric height of layer interfaces"
packages="vertical_stage_out;met_stage_out"/>
<var name="rdzw" type="real" dimensions="nVertLevels" units="unitless"
description="Reciprocal dzw"
packages="vertical_stage_out;met_stage_out"/>
<var name="dzu" type="real" dimensions="nVertLevels" units="unitless"
description="d(zeta) at w levels"
packages="vertical_stage_out;met_stage_out"/>
<var name="rdzu" type="real" dimensions="nVertLevels" units="unitless"
description="Reciprocal dzu"
packages="vertical_stage_out;met_stage_out"/>
<var name="fzm" type="real" dimensions="nVertLevels" units="unitless"
description="Weight for linear interpolation to w(k) point for u(k) level variable"
packages="vertical_stage_out;met_stage_out"/>
<var name="fzp" type="real" dimensions="nVertLevels" units="unitless"
description="Weight for linear interpolation to w(k) point for u(k-1) level variable"
packages="vertical_stage_out;met_stage_out"/>
<var name="zxu" type="real" dimensions="nVertLevels nEdges" units="unitless"
description="dz/dx on horizontal coordinate surfaces at u levels"
packages="vertical_stage_out;met_stage_out"/>
<var name="zz" type="real" dimensions="nVertLevels nCells" units="unitless"
description="d(zeta)/dz, vertical metric term"
packages="vertical_stage_out;met_stage_out"/>
<var name="zb" type="real" dimensions="nVertLevelsP1 TWO nEdges" units="unitless"
description="Coefficients for contribution from u to omega diagnosis, edge-oriented"
packages="vertical_stage_out;met_stage_out"/>
<var name="zb3" type="real" dimensions="nVertLevelsP1 TWO nEdges" units="unitless"
description="Coefficients for 3rd-order correction to contribution from u to omega diagnosis, edge-oriented"
packages="vertical_stage_out;met_stage_out"/>
<!-- W-Rayleigh damping coefficient -->
<var name="dss" type="real" dimensions="nVertLevels nCells" units="unitless"
description="w-damping coefficient"
packages="vertical_stage_out;met_stage_out"/>
<var name="u_init" type="real" dimensions="nVertLevels" units="m s^{-1}"
description="u reference profile"
packages="met_stage_out"/>
<var name="v_init" type="real" dimensions="nVertLevels" units="m s^{-1}"
description="v reference profile"
packages="met_stage_out"/>
<var name="t_init" type="real" dimensions="nVertLevels nCells" units="K"
description="theta reference profile"
packages="met_stage_out"/>
<var name="qv_init" type="real" dimensions="nVertLevels" units="kg kg^{-1}"
description="qv reference profile"
packages="met_stage_out"/>
<!-- variables needed for advection -->
<var name="deriv_two" type="real" dimensions="FIFTEEN TWO nEdges" units="unitless"
description="weights for cell-centered second derivative, normal to edge, for transport scheme"/>
<var name="advCells" type="integer" dimensions="TWENTYONE nCells" units="-"
description="cells used in least squares fit of polynomial for advection"/>
<!-- deformation calculation weights -->
<var name="defc_a" type="real" dimensions="maxEdges nCells" units="unitless"
description="Coefficients for computing the off-diagonal components of the horizontal deformation"/>
<var name="defc_b" type="real" dimensions="maxEdges nCells" units="unitless"
description="Coefficients for computing the diagonal components of the horizontal deformation"/>
<var name="cell_gradient_coef_x" type="real" dimensions="maxEdges nCells" units="m^-1"
description="Coefficients for computing the x (zonal) derivative of a cell-centered variable"/>
<var name="cell_gradient_coef_y" type="real" dimensions="maxEdges nCells" units="m^-1"
description="Coefficients for computing the y (meridional) derivative of a cell-centered variable"/>
<!-- arrays required for reconstruction of velocity field -->
<var name="coeffs_reconstruct" type="real" dimensions="R3 maxEdges nCells" units="unitless"
description="Coefficients to reconstruct velocity vectors at cell centers"/>
<var name="bdyMaskCell" type="integer" dimensions="nCells" default_value="0" units="-"
description="Indicator of whether a cell is an interior cell, a relaxation-zone cell, or a specified-zone cell"/>
<var name="bdyMaskEdge" type="integer" dimensions="nEdges" default_value="0" units="-"
description="Indicator of whether an edge is an interior edge, a relaxation-zone edge, or a specified-zone edge"/>
<var name="bdyMaskVertex" type="integer" dimensions="nVertices" default_value="0" units="-"
description="Indicator of whether an vertex is an interior vertex, a relaxation-zone vertex, or a specified-zone vertex"/>
</var_struct>
<var_struct name="state" time_levs="1">
<var name="initial_time" type="text" dimensions="" units="YYYY-MM-DD_hh:mm:ss"
description="Model initialization time"/>
<var name="xtime" type="text" dimensions="Time" units="YYYY-MM-DD_hh:mm:ss"
description="Model valid time"/>
<var name="u" type="real" dimensions="nVertLevels nEdges Time" units="m s^{-1}"
description="Horizontal normal velocity at edges"
packages="met_stage_out"/>
<var name="w" type="real" dimensions="nVertLevelsP1 nCells Time" units="m s^{-1}"
description="Vertical velocity at vertical cell faces"
packages="met_stage_out"/>
<var name="rho_zz" type="real" dimensions="nVertLevels nCells Time" units="kg m^{-3}"
description="Dry air density divided by d(zeta)/dz"
packages="met_stage_out"/>
<var name="theta_m" type="real" dimensions="nVertLevels nCells Time" units="K"
description="Moist potential temperature: theta*(1+q_v*R_v/R_d)"
packages="met_stage_out"/>
<var_array name="scalars" type="real" dimensions="nVertLevels nCells Time" packages="met_stage_out">
<var name="qv" array_group="moist" units="kg kg^{-1}"
description="Water vapor mixing ratio"/>
<var name="qc" array_group="moist" units="kg kg^{-1}"
description="Cloud water mixing ratio"/>
<var name="qr" array_group="moist" units="kg kg^{-1}"
description="Rain water mixing ratio"/>
</var_array>
<!-- Climatology for ocean mixed-layer depth -->
<var name="h_oml_initial" type="real" dimensions="nCells Time" units="m"
description="Initial depth of ocean mix layer"
packages="met_stage_out"/>
</var_struct>
<var_struct name="lbc_state" time_levs="1">
<var name="lbc_u" type="real" dimensions="nVertLevels nEdges Time" packages="lbcs"
units="m s^{-1}"
description="Horizontal normal velocity on domain lateral boundary edges"/>
<var name="lbc_w" type="real" dimensions="nVertLevelsP1 nCells Time" packages="lbcs"
units="m s^{-1}"
description="Vertical velocity on domain lateral boundary vertical cell faces"/>
<var name="lbc_rho" type="real" dimensions="nVertLevels nCells Time" packages="lbcs"
units="kg m^{-3}"
description="Dry air density on lateral boundary cells"/>
<var name="lbc_theta" type="real" dimensions="nVertLevels nCells Time" packages="lbcs"
units="K"
description="Potential temperature on lateral boundary cells"/>
<var_array name="lbc_scalars" type="real" dimensions="nVertLevels nCells Time" packages="lbcs">
<var name="lbc_qv" array_group="moist" units="kg kg^{-1}"
description="Water vapor mixing ratio on lateral boundary cells"/>
<var name="lbc_qc" array_group="moist" units="kg kg^{-1}"
description="Cloud water mixing ratio on lateral boundary cells"/>
<var name="lbc_qr" array_group="moist" units="kg kg^{-1}"