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get_lca.py cannot find taxa.sqlite #9

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meijer-jeroen opened this issue Jan 10, 2022 · 0 comments
Open

get_lca.py cannot find taxa.sqlite #9

meijer-jeroen opened this issue Jan 10, 2022 · 0 comments

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@meijer-jeroen
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meijer-jeroen commented Jan 10, 2022

`$ cat logs/outbreak/get_lca.log

Traceback (most recent call last):

File "/home/jeroen/NOBINFBACKUP/outbreak/programs/phap/workflow/rules/../scripts/get_lca.py", line 151, in
ncbi = NCBITaxa(dbfile=args.db)

File "/home/jeroen/NOBINFBACKUP/outbreak/programs/phap/.snakemake/conda/938b87b5c0c2950d3032494a9e1aa10d/lib/python3.8/site-packages/ete3/ncbi_taxonomy/ncbiquery.py", line 115, in init
raise ValueError("Cannot open taxonomy database: %s" % self.dbfile)

ValueError: Cannot open taxonomy database: /home/jeroen/.etetoolkit/taxa.sqlite`

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