| When | What | Who | Where |
|---|---|---|---|
| 09:00-10:00 | Lecture: Overview different single-cell platforms and assays | Susan Kloet | Ae-4.06 |
| 10:00-10:30 | coffee break | Ae-4.06 | |
| 10:30-12:00 | Lecture: Droplet-based scRNA-seq, 10x Genomics | Susan Kloet & Miao Chien | Ae-4.06 |
| 12:00-13:00 | lunch | Ae-4.06 | |
| 13:00-14:00 | Lecture: Plate-based scRNA-seq | Miao Chien | Ae-3.21 |
| 14:00-15:00 | Lecture: Experimental design & sample preparation | Susan Kloet | Ae-3.21 |
| 15:00-15:30 | coffee break | Ae-3.21 | |
| 15:30-17:00 | Lecture and Lab: Preprocessing: from reads to a count matrix | Roberta Menafra | Ae-3.21 |
| When | What | Who | Where |
|---|---|---|---|
| 09:00-10:00 | Lecture: Quality control and normalization | Ahmed Mahfouz | Ae-4.06 |
| 10:00-10:30 | coffee break | Ae-4.06 | |
| 10:30-12:00 | Lab: Quality control and normalization, (Rmd file) | Ahmed Mahfouz | Ae-4.06 |
| 12:00-13:00 | lunch | Ae-4.06 | |
| 13:00-14:00 | Lecture: Clustering | Marcel Reinders | Ae-4.06 |
| 14:00-15:00 | Lab: Clustering, (Rmd file) | Marcel Reinders | Ae-4.06 |
| 15:00-15:30 | coffee break | Ae-4.06 | |
| 15:30-17:00 | Lecture & Lab: Mass Cytometry | Natasja de Vries | Ae-4.06 |
| When | What | Who | Where |
|---|---|---|---|
| 09:00-10:00 | Lecture: Dimensionality reduction | Thomas Höllt | Ae-3.21 |
| 10:00-10:30 | coffee break | Ae-3.21 | |
| 10:30-12:00 | Lab: Dimensionality reduction, (Rmd file) | Thomas Höllt | Ae-3.21 |
| 12:00-13:00 | lunch | Ae-3.21 | |
| 13:00-14:00 | Lecture: Data integration | Ahmed Mahfouz | Ae-4.06 |
| 14:00-15:00 | Lab: Data integration, (Rmd file) | Ahmed Mahfouz | Ae-4.06 |
| 15:00-15:30 | coffee break | Ae-4.06 | |
| 15:30-17:00 | Lecture: Spatial transcriptomics | Susanne van den Brink | Ae-4.06 |
| When | What | Who | Where |
|---|---|---|---|
| 09:00-10:00 | Lecture: Trajectory inference | Mohammed Charrout | Ae-3.21 |
| 10:00-10:30 | coffee break | Ae-3.21 | |
| 10:30-12:00 | Lab: Trajectory inference | Mohammed Charrout | Ae-4.06 |
| 12:00-13:00 | lunch | Ae-4.06 | |
| 13:00-14:30 | Lecture: Single cell multi-omics | Miao Chien | Ae-4.06 |
| 14:30-15:00 | coffee break | Ae-4.06 | |
| 15:00-16:30 | Lecture: TCR/BCR sequencing | Indu Khatri & Erik van den Akker | Ae-4.06 |
| When | What | Who | Where |
|---|---|---|---|
| 09:00-09:45 | Exploring human pancreatic β-cell identity change using single-cell RNA sequencing | Nathalie Groen (LUMC) | Ae-4.06 |
| 09:45-10:30 | CRISPR/Cas9-based lineage tracing in zebrafish: a glimpse on development and regeneration | Anna Alemany (Hubrecht Institute) | Ae-4.06 |
| 10:30-11:00 | coffee break | Ae-4.06 | |
| 11:00-11:45 | Single cell sequencing to decipher the human germline | Susana Chuva de Sousa (LUMC) | Ae-4.06 |
| 11:45-12:30 | Using single-cell RNA-sequencing data to gain a personalized disease understanding | Monique van der wijst (UMCG) | Ae-4.06 |