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Issues list

Create nextflow process to hmmpress marker hmms enhancement New feature or request good first issue Good for newcomers nextflow Nextflow related issues/code
#171 opened Jun 3, 2021 by chasemc
Confidence value for taxon assignment enhancement New feature or request
#48 opened Apr 15, 2020 by evanroyrees
Autometa Logo documentation Improvements or additions to documentation stretch wonderful for the community, yet may not be top priority
#75 opened May 7, 2020 by evanroyrees
CI/CD: Automated testing with pytest and mocks enhancement New feature or request stretch wonderful for the community, yet may not be top priority
#86 opened Jun 3, 2020 by evanroyrees
19 of 36 tasks
Aim 0: Release 2.0
Enable binning of eukaryotic genomes enhancement New feature or request
#95 opened Jun 18, 2020 by jason-c-kwan
API for loading or fetching data for development, benchmarking and testing enhancement New feature or request good first issue Good for newcomers python Python related issues/code
#110 opened Sep 23, 2020 by evanroyrees
Small test datasets to sanity check/attempt to break code enhancement New feature or request good first issue Good for newcomers
#152 opened Apr 27, 2021 by chasemc
1 of 3 tasks
Add nextfow test profile enhancement New feature or request nextflow Nextflow related issues/code
#162 opened May 21, 2021 by chasemc
Add a profile for deepthought that everyone in lab can use enhancement New feature or request good first issue Good for newcomers nextflow Nextflow related issues/code
#167 opened May 24, 2021 by chasemc
Animations in methods documentation documentation Improvements or additions to documentation enhancement New feature or request stretch wonderful for the community, yet may not be top priority
#172 opened Jun 7, 2021 by evanroyrees
3 of 40 tasks
Split input fasta file, smartly enhancement New feature or request good first issue Good for newcomers
#193 opened Oct 18, 2021 by chasemc
Pipeline fails if number of splits is greater than number of input contigs enhancement New feature or request good first issue Good for newcomers nextflow Nextflow related issues/code
#205 opened Dec 16, 2021 by chasemc
Add Jupyter notebook examples / autometa code snippets documentation Improvements or additions to documentation good first issue Good for newcomers
#214 opened Jan 7, 2022 by evanroyrees
5 tasks
Notes on how to upgrade to current nf-core standards enhancement New feature or request nextflow Nextflow related issues/code stretch wonderful for the community, yet may not be top priority
#226 opened Jan 25, 2022 by chasemc
Migrate documentation from reStructuredText to MyST Markdown documentation Improvements or additions to documentation good first issue Good for newcomers
#240 opened Feb 18, 2022 by evanroyrees
Add threads for for bowtie2-build enhancement New feature or request good first issue Good for newcomers nextflow Nextflow related issues/code
#263 opened Apr 18, 2022 by chasemc
🐌 ➡️ 🐎 Optimize DBSCAN clustering method for genome binning enhancement New feature or request stretch wonderful for the community, yet may not be top priority
#287 opened Aug 7, 2022 by evanroyrees
Running the test profile fails, unable to find docker image bug Something isn't working
#291 opened Sep 6, 2022 by chasemc
PCA behavior
#367 opened Nov 12, 2024 by chasemc
ProTip! Updated in the last three days: updated:>2025-02-22.