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Issues: KwanLab/Autometa
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Create nextflow process to hmmpress marker hmms
enhancement
New feature or request
good first issue
Good for newcomers
nextflow
Nextflow related issues/code
#171
opened Jun 3, 2021 by
chasemc
Refining bins using the coverage of individual genes across samples
enhancement
New feature or request
Drivers of diversity in soil
enhancement
New feature or request
#14
opened Mar 5, 2020 by
evanroyrees
Aim 3: Study the construction of diverse communities in soil
4 tasks
Confidence value for taxon assignment
enhancement
New feature or request
#48
opened Apr 15, 2020 by
evanroyrees
Autometa Logo
documentation
Improvements or additions to documentation
stretch
wonderful for the community, yet may not be top priority
#75
opened May 7, 2020 by
evanroyrees
CI/CD: Automated testing with pytest and mocks
enhancement
New feature or request
stretch
wonderful for the community, yet may not be top priority
Enable binning of eukaryotic genomes
enhancement
New feature or request
#95
opened Jun 18, 2020 by
jason-c-kwan
API for loading or fetching data for development, benchmarking and testing
enhancement
New feature or request
good first issue
Good for newcomers
python
Python related issues/code
#110
opened Sep 23, 2020 by
evanroyrees
Use of metrics like gene density and kmer content for taxon assignments
enhancement
New feature or request
#115
opened Nov 18, 2020 by
tderond
> Consider adding at least minimum versions for the Conda install libraries
enhancement
New feature or request
#135
opened Mar 18, 2021 by
chasemc
Small test datasets to sanity check/attempt to break code
enhancement
New feature or request
good first issue
Good for newcomers
#152
opened Apr 27, 2021 by
chasemc
1 of 3 tasks
Add nextfow test profile
enhancement
New feature or request
nextflow
Nextflow related issues/code
#162
opened May 21, 2021 by
chasemc
Incorporating divergence and database structure into taxonomic inference
enhancement
New feature or request
Add a profile for deepthought that everyone in lab can use
enhancement
New feature or request
good first issue
Good for newcomers
nextflow
Nextflow related issues/code
#167
opened May 24, 2021 by
chasemc
Animations in methods documentation
documentation
Improvements or additions to documentation
enhancement
New feature or request
stretch
wonderful for the community, yet may not be top priority
#172
opened Jun 7, 2021 by
evanroyrees
3 of 40 tasks
Split input fasta file, smartly
enhancement
New feature or request
good first issue
Good for newcomers
#193
opened Oct 18, 2021 by
chasemc
Pipeline fails if number of splits is greater than number of input contigs
enhancement
New feature or request
good first issue
Good for newcomers
nextflow
Nextflow related issues/code
#205
opened Dec 16, 2021 by
chasemc
Add Jupyter notebook examples / autometa code snippets
documentation
Improvements or additions to documentation
good first issue
Good for newcomers
#214
opened Jan 7, 2022 by
evanroyrees
5 tasks
Notes on how to upgrade to current nf-core standards
enhancement
New feature or request
nextflow
Nextflow related issues/code
stretch
wonderful for the community, yet may not be top priority
#226
opened Jan 25, 2022 by
chasemc
Migrate documentation from reStructuredText to MyST Markdown
documentation
Improvements or additions to documentation
good first issue
Good for newcomers
#240
opened Feb 18, 2022 by
evanroyrees
🐛🪲 Prevent edge case where MAG completeness is incorrectly computed
bug
Something isn't working
#255
opened Apr 5, 2022 by
evanroyrees
Add threads for for bowtie2-build
enhancement
New feature or request
good first issue
Good for newcomers
nextflow
Nextflow related issues/code
#263
opened Apr 18, 2022 by
chasemc
🐌 ➡️ 🐎 Optimize DBSCAN clustering method for genome binning
enhancement
New feature or request
stretch
wonderful for the community, yet may not be top priority
#287
opened Aug 7, 2022 by
evanroyrees
Running the test profile fails, unable to find docker image
bug
Something isn't working
#291
opened Sep 6, 2022 by
chasemc
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Updated in the last three days: updated:>2025-02-22.