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Trying to upgrade project v1.6 with 1.6.0-rc2 on W10, error installing artifact #40015

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jdadavid opened this issue Mar 14, 2021 · 5 comments
Closed

Trying to upgrade project v1.6 with 1.6.0-rc2 on W10, error installing artifact #40015

jdadavid opened this issue Mar 14, 2021 · 5 comments

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@jdadavid
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Just installed rc2 (I used rc1 prior), then doing ]up, getting artifact install error

(@v1.6) pkg> up
    Updating registry at `C:\Users\davidj\.julia\registries\General`
    Updating git-repo `https://github.com/JuliaRegistries/General.git`
┌ Warning: failed to extract archive downloaded from https://pkg.julialang.org/package/f50d1b31-88e8-58de-be2c-1cc445318
75f/1b7bf41258f6c5c9c31df8c1ba34c1fc88674957
└ @ Pkg.Operations C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Operations.jl:590
┌ Warning: failed to extract archive downloaded from https://api.github.com/repos/JuliaBinaryWrappers/Rmath_jll.jl/tarba
ll/1b7bf41258f6c5c9c31df8c1ba34c1fc88674957
└ @ Pkg.Operations C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Operations.jl:590
     Cloning [f50d1b31-88e8-58de-be2c-1cc44531875f] Rmath_jll from https://github.com/JuliaBinaryWrappers/Rmath_jll.jl.g
it
   Installed Rmath_jll ─ v0.2.2+2
  Downloaded artifact: Rmath
  Downloaded artifact: Rmath
ERROR: Unable to automatically install 'Rmath' from 'C:\Users\davidj\.julia\packages\Rmath_jll\lgYeQ\Artifacts.toml'
Stacktrace:
  [1] error(s::String)
    @ Base .\error.jl:33
  [2] ensure_artifact_installed(name::String, meta::Dict{String, Any}, artifacts_toml::String; platform::Base.BinaryPlat
forms.Platform, verbose::Bool, quiet_download::Bool)
    @ Pkg.Artifacts C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Artifacts.jl:436
  [3] ensure_all_artifacts_installed(artifacts_toml::String; platform::Base.BinaryPlatforms.Platform, pkg_uuid::Nothing,
 include_lazy::Bool, verbose::Bool, quiet_download::Bool)
    @ Pkg.Artifacts C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Artifacts.jl:501
  [4] download_artifacts(ctx::Pkg.Types.Context, pkg_roots::Vector{String}; platform::Base.BinaryPlatforms.Platform, ver
bose::Bool)
    @ Pkg.Operations C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Operations.jl:702
  [5] download_artifacts(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; platform::Base.BinaryPlatforms.Pla
tform, julia_version::VersionNumber, verbose::Bool)
    @ Pkg.Operations C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Operations.jl:680
  [6] download_artifacts
    @ C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Operations.jl:675 [inlined]
  [7] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel)
    @ Pkg.Operations C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\Operations.jl:1319
  [8] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.Pac
  [9] up
    @ C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\API.jl:230 [inlined]
 [10] up(pkgs::Vector{Pkg.Types.PackageSpec}; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tup
le{}}})
    @ Pkg.API C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\API.jl:73
 [11] up(pkgs::Vector{Pkg.Types.PackageSpec})
    @ Pkg.API C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\API.jl:72
 [12] do_cmd!(command::Pkg.REPLMode.Command, repl::REPL.LineEditREPL)
    @ Pkg.REPLMode C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\REPLMode\REPLMode.jl:408
 [13] do_cmd(repl::REPL.LineEditREPL, input::String; do_rethrow::Bool)
    @ Pkg.REPLMode C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\REPLMode\REPLMode.jl:386
 [14] do_cmd
    @ C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\REPLMode\REPLMode.jl:377 [inlined]
 [15] (::Pkg.REPLMode.var"#24#27"{REPL.LineEditREPL, REPL.LineEdit.Prompt})(s::REPL.LineEdit.MIState, buf::IOBuffer, ok:
:Bool)
    @ Pkg.REPLMode C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\REPLMode\REPLMode.jl:550
 [16] #invokelatest#2
    @ .\essentials.jl:708 [inlined]
 [17] invokelatest
    @ .\essentials.jl:706 [inlined]
 [18] run_interface(terminal::REPL.Terminals.TextTerminal, m::REPL.LineEdit.ModalInterface, s::REPL.LineEdit.MIState)
    @ REPL.LineEdit C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\REPL\src\LineEdit.jl:2441
 [19] run_frontend(repl::REPL.LineEditREPL, backend::REPL.REPLBackendRef)
    @ REPL C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\REPL\src\REPL.jl:1126
 [20] (::REPL.var"#44#49"{REPL.LineEditREPL, REPL.REPLBackendRef})()
    @ REPL .\task.jl:406


julia> versioninfo()
Julia Version 1.6.0-rc2
Commit 4b6b9fe4d7 (2021-03-11 07:05 UTC)
Platform Info:
  OS: Windows (x86_64-w64-mingw32)
  CPU: AMD Ryzen 5 3500U with Radeon Vega Mobile Gfx
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-11.0.1 (ORCJIT, znver1)
Environment:
  JULIA_EDITOR = "C:\Program Files\Notepad++\notepad++.exe"

julia>

Trying again with ]instantiate, same error.
Reverting to rc1, up works.
@KristofferC
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Dup of #40000. Did you install Julia as administrator?

@jdadavid
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No, as ordinary user

@KristofferC
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Can you try execute:

using Pkg
Pkg.add(url="https://github.com/giordano/DebugArtifacts.jl")
using DebugArtifacts
debug_artifact("Rmath")

@KristofferC
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KristofferC commented Mar 14, 2021 •
edited
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I did it myself, looks like a problem with julia symlink handling on windows

[ Info: Unpacking C:\Users\KRISTO~1\AppData\Local\Temp\jl_xI3BvI1yDw-download.gz into C:\Users\KRISTO~1\AppData\Local\Temp\jl_5uTkkm\unpacked...
ERROR: MethodError: no method matching !(::Int64)
Closest candidates are:
  !(::Bool) at bool.jl:33
  !(::Function) at operators.jl:969
  !(::Missing) at missing.jl:101
Stacktrace:
  [1] symlink(target::String, link::String; dir_target::Bool)
    @ Base.Filesystem .\file.jl:1042
  [2] symlink
    @ .\file.jl:1010 [inlined]
  [3] can_symlink(dir::String)
    @ Tar C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Tar\src\Tar.jl:25
  [4] #75
    @ C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Tar\src\Tar.jl:198 [inlined]
  [5] arg_mkdir(f::Tar.var"#75#78"{Base.Process, Base.DevNull, Tar.var"#1#2"}, arg::String)
    @ ArgTools C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\ArgTools\src\ArgTools.jl:163
  [6] #74
    @ C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Tar\src\Tar.jl:196 [inlined]
  [7] arg_read(f::Tar.var"#74#77"{Base.DevNull, Tar.var"#1#2", String}, arg::Base.Process)
    @ ArgTools C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\ArgTools\src\ArgTools.jl:61
  [8] extract(predicate::Function, tarball::Base.Process, dir::String; skeleton::Nothing, copy_symlinks::Nothing)
    @ Tar C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Tar\src\Tar.jl:195

@jdadavid
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I confirm symlink problem - note I am using Julia under cygwin, but result is similar under Windows/Powershell (only change is name of tempdir)

julia> debug_artifact("Rmath")
[ Info: Platform: Windows x86_64 {cxxstring_abi=cxx11, julia_version=1.6.0, libgfortran_version=5.0.0}
Julia Version 1.6.0-rc2
Commit 4b6b9fe4d7 (2021-03-11 07:05 UTC)
Platform Info:
  OS: Windows (x86_64-w64-mingw32)
  CPU: AMD Ryzen 5 3500U with Radeon Vega Mobile Gfx
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-11.0.1 (ORCJIT, znver1)
Environment:
  JULIA_EDITOR = "C:\Program Files\Notepad++\notepad++.exe"

[ Info: Downloading Artifacts.toml to C:\cygwin64\tmp\jl_dz5krX\Artifacts.toml...
[ Info: Extracting artifact info for platform x86_64-w64-mingw32-libgfortran5-cxx11-julia_version+1.6.0...
[ Info: Found meta object with git-tree-sha1 72e73d324066b2760195d47f2b659d818cd65c42, attempting download...
[ Info: No hash cache found
[ Info: Calculated hash 6662a51b784988cdb83a5f0fede944ad1530ae84ecb816baeaa27e808fdf4cac for file C:\cygwin64\tmp\jl_rUZ
MqXSChL-download.gz
[ Info: Unpacking C:\cygwin64\tmp\jl_rUZMqXSChL-download.gz into C:\cygwin64\tmp\jl_dz5krX\unpacked...
ERROR: IOError: unlink("C:\\cygwin64\\tmp\\jl_rUZMqXSChL-download.gz"): resource busy or locked (EBUSY)
Stacktrace:
  [1] uv_error
    @ .\libuv.jl:97 [inlined]
  [2] unlink(p::String)
    @ Base.Filesystem .\file.jl:934
  [3] rm(path::String; force::Bool, recursive::Bool)
    @ Base.Filesystem .\file.jl:272
  [4] rm
    @ .\file.jl:263 [inlined]
  [5] download_verify_unpack(url::String, hash::String, dest::String; tarball_path::Nothing, ignore_existence::Bool, for
ce::Bool, verbose::Bool, quiet_download::Bool)
    @ Pkg.PlatformEngines C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\PlatformEngines.jl:
514
  [6] (::DebugArtifacts.var"#3#4"{String, Base.BinaryPlatforms.Platform, String})(tmp_dir::String)
    @ DebugArtifacts ~\.julia\packages\DebugArtifacts\VcVh2\src\DebugArtifacts.jl:65
  [7] mktempdir(fn::DebugArtifacts.var"#3#4"{String, Base.BinaryPlatforms.Platform, String}, parent::String; prefix::Str
ing)
    @ Base.Filesystem .\file.jl:729
  [8] mktempdir
    @ .\file.jl:727 [inlined]
  [9] debug_artifact(artifact_name::String, platform::Base.BinaryPlatforms.Platform)
    @ DebugArtifacts ~\.julia\packages\DebugArtifacts\VcVh2\src\DebugArtifacts.jl:53
 [10] debug_artifact(artifact_name::String)
    @ DebugArtifacts ~\.julia\packages\DebugArtifacts\VcVh2\src\DebugArtifacts.jl:43
 [11] top-level scope
    @ REPL[4]:1

caused by: MethodError: no method matching !(::Int64)
Closest candidates are:
  !(::Bool) at bool.jl:33
  !(::Function) at operators.jl:969
  !(::Missing) at missing.jl:101
Stacktrace:
  [1] symlink(target::String, link::String; dir_target::Bool)
    @ Base.Filesystem .\file.jl:1042
  [2] symlink
    @ .\file.jl:1010 [inlined]
  [3] can_symlink(dir::String)
    @ Tar C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Tar\src\Tar.jl:25
  [4] #75
    @ C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Tar\src\Tar.jl:198 [inlined]
  [5] arg_mkdir(f::Tar.var"#75#78"{Base.Process, Base.DevNull, Tar.var"#1#2"}, arg::String)
    @ ArgTools C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\ArgTools\src\ArgTools.jl:163
  [6] #74
    @ C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Tar\src\Tar.jl:196 [inlined]
  [7] arg_read(f::Tar.var"#74#77"{Base.DevNull, Tar.var"#1#2", String}, arg::Base.Process)
    @ ArgTools C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\ArgTools\src\ArgTools.jl:61
  [8] extract(predicate::Function, tarball::Base.Process, dir::String; skeleton::Nothing, copy_symlinks::Nothing)
    @ Tar C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Tar\src\Tar.jl:195
  [9] #extract#80
    @ C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Tar\src\Tar.jl:217 [inlined]
 [10] (::Pkg.PlatformEngines.var"#24#26"{String})(io::Base.Process)
    @ Pkg.PlatformEngines C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\PlatformEngines.jl:
510
 [11] open(::Pkg.PlatformEngines.var"#24#26"{String}, ::Cmd; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, Nam
edTuple{(), Tuple{}}})
    @ Base .\process.jl:393
 [12] open
    @ .\process.jl:391 [inlined]
 [13] download_verify_unpack(url::String, hash::String, dest::String; tarball_path::Nothing, ignore_existence::Bool, for
ce::Bool, verbose::Bool, quiet_download::Bool)
    @ Pkg.PlatformEngines C:\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.6\Pkg\src\PlatformEngines.jl:
509
 [14] (::DebugArtifacts.var"#3#4"{String, Base.BinaryPlatforms.Platform, String})(tmp_dir::String)
    @ DebugArtifacts ~\.julia\packages\DebugArtifacts\VcVh2\src\DebugArtifacts.jl:65
 [15] mktempdir(fn::DebugArtifacts.var"#3#4"{String, Base.BinaryPlatforms.Platform, String}, parent::String; prefix::Str
ing)
    @ Base.Filesystem .\file.jl:729
 [16] mktempdir
    @ .\file.jl:727 [inlined]
 [17] debug_artifact(artifact_name::String, platform::Base.BinaryPlatforms.Platform)
    @ DebugArtifacts ~\.julia\packages\DebugArtifacts\VcVh2\src\DebugArtifacts.jl:53
 [18] debug_artifact(artifact_name::String)
    @ DebugArtifacts ~\.julia\packages\DebugArtifacts\VcVh2\src\DebugArtifacts.jl:43
 [19] top-level scope
    @ REPL[4]:1

julia>

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@KristofferC @jdadavid