1.6.0-DEV-300e34cf74.log

################################################################################
# PkgEval set-up: 2020-10-30T06:09:05.193
#

Julia Version 1.6.0-DEV.1380
Commit 300e34cf74 (2020-10-30 02:28 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: AMD EPYC 7502 32-Core Processor
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-11.0.0 (ORCJIT, znver2)
Environment:
  JULIA_DEPOT_PATH = ::/usr/local/share/julia
  JULIA_MAX_NUM_PRECOMPILE_FILES = 9223372036854775807



################################################################################
# Installation: 2020-10-30T06:09:06.777
#

   Resolving package versions...
   Installed MbedTLS_jll ────────── v2.16.8+1
   Installed Distances ──────────── v0.10.0
   Installed ArgParse ───────────── v1.1.0
   Installed FastaIO ────────────── v1.0.0
   Installed PairwiseListMatrices ─ v0.8.0
   Installed XML2_jll ───────────── v2.9.10+3
   Installed JLLWrappers ────────── v1.1.3
   Installed GZip ───────────────── v0.5.1
   Installed AutoHashEquals ─────── v0.2.0
   Installed Clustering ─────────── v0.14.2
   Installed ProgressMeter ──────── v1.4.0
   Installed IniFile ────────────── v0.5.0
   Installed TextWrap ───────────── v1.0.1
   Installed Requires ───────────── v1.1.0
   Installed OrderedCollections ─── v1.3.1
   Installed SortingAlgorithms ──── v0.3.1
   Installed RecipesBase ────────── v1.1.0
   Installed CodecZlib ──────────── v0.7.0
   Installed DataStructures ─────── v0.17.20
   Installed LightXML ───────────── v0.9.0
   Installed MIToS ──────────────── v2.5.0
   Installed Zlib_jll ───────────── v1.2.11+18
   Installed MbedTLS ────────────── v1.0.3
   Installed InvertedIndices ────── v1.0.0
   Installed DataAPI ────────────── v1.3.0
   Installed NearestNeighbors ───── v0.4.7
   Installed TranscodingStreams ─── v0.9.5
   Installed HTTP ───────────────── v0.8.19
   Installed Combinatorics ──────── v1.0.2
   Installed Missings ───────────── v0.4.4
   Installed Formatting ─────────── v0.4.1
   Installed NamedArrays ────────── v0.9.4
   Installed StaticArrays ───────── v0.12.5
   Installed Libiconv_jll ───────── v1.16.0+7
   Installed StatsBase ──────────── v0.33.2
Updating `~/.julia/environments/v1.6/Project.toml`
  [51bafb47] + MIToS v2.5.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
  [c7e460c6] + ArgParse v1.1.0
  [15f4f7f2] + AutoHashEquals v0.2.0
  [aaaa29a8] + Clustering v0.14.2
  [944b1d66] + CodecZlib v0.7.0
  [861a8166] + Combinatorics v1.0.2
  [9a962f9c] + DataAPI v1.3.0
  [864edb3b] + DataStructures v0.17.20
  [b4f34e82] + Distances v0.10.0
  [a0c94c4b] + FastaIO v1.0.0
  [59287772] + Formatting v0.4.1
  [92fee26a] + GZip v0.5.1
  [cd3eb016] + HTTP v0.8.19
  [83e8ac13] + IniFile v0.5.0
  [41ab1584] + InvertedIndices v1.0.0
  [692b3bcd] + JLLWrappers v1.1.3
  [9c8b4983] + LightXML v0.9.0
  [51bafb47] + MIToS v2.5.0
  [739be429] + MbedTLS v1.0.3
  [e1d29d7a] + Missings v0.4.4
  [86f7a689] + NamedArrays v0.9.4
  [b8a86587] + NearestNeighbors v0.4.7
  [bac558e1] + OrderedCollections v1.3.1
  [f9da4da7] + PairwiseListMatrices v0.8.0
  [92933f4c] + ProgressMeter v1.4.0
  [3cdcf5f2] + RecipesBase v1.1.0
  [ae029012] + Requires v1.1.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [90137ffa] + StaticArrays v0.12.5
  [2913bbd2] + StatsBase v0.33.2
  [b718987f] + TextWrap v1.0.1
  [3bb67fe8] + TranscodingStreams v0.9.5
  [94ce4f54] + Libiconv_jll v1.16.0+7
  [c8ffd9c3] + MbedTLS_jll v2.16.8+1
  [02c8fc9c] + XML2_jll v2.9.10+3
  [83775a58] + Zlib_jll v1.2.11+18
  [0dad84c5] + ArgTools
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8bb1440f] + DelimitedFiles
  [8ba89e20] + Distributed
  [f43a241f] + Downloads
  [b77e0a4c] + InteractiveUtils
  [b27032c2] + LibCURL
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [44cfe95a] + Pkg
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA
  [9e88b42a] + Serialization
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays
  [10745b16] + Statistics
  [fa267f1f] + TOML
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [deac9b47] + LibCURL_jll
  [14a3606d] + MozillaCACerts_jll


################################################################################
# Testing: 2020-10-30T06:09:12.473
#


     Testing MIToS
Status `/tmp/jl_T5j9F3/Project.toml`
  [c7e460c6] ArgParse v1.1.0
  [15f4f7f2] AutoHashEquals v0.2.0
  [aaaa29a8] Clustering v0.14.2
  [944b1d66] CodecZlib v0.7.0
  [864edb3b] DataStructures v0.17.20
  [a0c94c4b] FastaIO v1.0.0
  [59287772] Formatting v0.4.1
  [cd3eb016] HTTP v0.8.19
  [9c8b4983] LightXML v0.9.0
  [51bafb47] MIToS v2.5.0
  [86f7a689] NamedArrays v0.9.4
  [f9da4da7] PairwiseListMatrices v0.8.0
  [92933f4c] ProgressMeter v1.4.0
  [f535d66d] ROCAnalysis v0.3.1
  [3cdcf5f2] RecipesBase v1.1.0
  [ae029012] Requires v1.1.0
  [90137ffa] StaticArrays v0.12.5
  [2913bbd2] StatsBase v0.33.2
  [3bb67fe8] TranscodingStreams v0.9.5
  [ade2ca70] Dates
  [8bb1440f] DelimitedFiles
  [8ba89e20] Distributed
  [37e2e46d] LinearAlgebra
  [44cfe95a] Pkg
  [9a3f8284] Random
  [9e88b42a] Serialization
  [10745b16] Statistics
  [8dfed614] Test
Status `/tmp/jl_T5j9F3/Manifest.toml`
  [c7e460c6] ArgParse v1.1.0
  [15f4f7f2] AutoHashEquals v0.2.0
  [336ed68f] CSV v0.7.7
  [324d7699] CategoricalArrays v0.8.3
  [aaaa29a8] Clustering v0.14.2
  [944b1d66] CodecZlib v0.7.0
  [861a8166] Combinatorics v1.0.2
  [34da2185] Compat v3.23.0
  [9a962f9c] DataAPI v1.3.0
  [a93c6f00] DataFrames v0.21.8
  [864edb3b] DataStructures v0.17.20
  [e2d170a0] DataValueInterfaces v1.0.0
  [b4f34e82] Distances v0.10.0
  [a0c94c4b] FastaIO v1.0.0
  [59287772] Formatting v0.4.1
  [92fee26a] GZip v0.5.1
  [cd3eb016] HTTP v0.8.19
  [83e8ac13] IniFile v0.5.0
  [41ab1584] InvertedIndices v1.0.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.1.3
  [682c06a0] JSON v0.21.1
  [9c8b4983] LightXML v0.9.0
  [51bafb47] MIToS v2.5.0
  [739be429] MbedTLS v1.0.3
  [e1d29d7a] Missings v0.4.4
  [86f7a689] NamedArrays v0.9.4
  [b8a86587] NearestNeighbors v0.4.7
  [bac558e1] OrderedCollections v1.3.1
  [f9da4da7] PairwiseListMatrices v0.8.0
  [69de0a69] Parsers v1.0.11
  [2dfb63ee] PooledArrays v0.5.3
  [92933f4c] ProgressMeter v1.4.0
  [f535d66d] ROCAnalysis v0.3.1
  [3cdcf5f2] RecipesBase v1.1.0
  [189a3867] Reexport v0.2.0
  [ae029012] Requires v1.1.0
  [91c51154] SentinelArrays v1.2.16
  [a2af1166] SortingAlgorithms v0.3.1
  [276daf66] SpecialFunctions v0.10.3
  [90137ffa] StaticArrays v0.12.5
  [2913bbd2] StatsBase v0.33.2
  [856f2bd8] StructTypes v1.1.0
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v1.1.0
  [b718987f] TextWrap v1.0.1
  [3bb67fe8] TranscodingStreams v0.9.5
  [e66e0078] CompilerSupportLibraries_jll v0.3.4+0
  [94ce4f54] Libiconv_jll v1.16.0+7
  [c8ffd9c3] MbedTLS_jll v2.16.8+1
  [efe28fd5] OpenSpecFun_jll v0.5.3+4
  [02c8fc9c] XML2_jll v2.9.10+3
  [83775a58] Zlib_jll v1.2.11+18
  [0dad84c5] ArgTools
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8bb1440f] DelimitedFiles
  [8ba89e20] Distributed
  [f43a241f] Downloads
  [9fa8497b] Future
  [b77e0a4c] InteractiveUtils
  [b27032c2] LibCURL
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [44cfe95a] Pkg
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA
  [9e88b42a] Serialization
  [1a1011a3] SharedArrays
  [6462fe0b] Sockets
  [2f01184e] SparseArrays
  [10745b16] Statistics
  [fa267f1f] TOML
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [deac9b47] LibCURL_jll
  [14a3606d] MozillaCACerts_jll
     Testing Running tests...
ERROR: LoadError: LoadError: syntax: invalid assignment location "PairwiseListMatrices.t" around /home/pkgeval/.julia/packages/PairwiseListMatrices/cfFkP/src/pairwiselistmatrix.jl:1040
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/PairwiseListMatrices/cfFkP/src/pairwiselistmatrix.jl:1005
  [2] include(mod::Module, _path::String)
    @ Base ./Base.jl:389
  [3] include(x::String)
    @ PairwiseListMatrices ~/.julia/packages/PairwiseListMatrices/cfFkP/src/PairwiseListMatrices.jl:10
  [4] top-level scope
    @ ~/.julia/packages/PairwiseListMatrices/cfFkP/src/PairwiseListMatrices.jl:40
  [5] include
    @ ./Base.jl:389 [inlined]
  [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base ./loading.jl:1201
  [7] top-level scope
    @ none:1
  [8] eval
    @ ./boot.jl:360 [inlined]
  [9] eval(x::Expr)
    @ Base.MainInclude ./client.jl:446
 [10] top-level scope
    @ none:1
in expression starting at /home/pkgeval/.julia/packages/PairwiseListMatrices/cfFkP/src/pairwiselistmatrix.jl:1005
in expression starting at /home/pkgeval/.julia/packages/PairwiseListMatrices/cfFkP/src/PairwiseListMatrices.jl:3
ERROR: LoadError: LoadError: Failed to precompile PairwiseListMatrices [f9da4da7-9382-5435-b973-175f5d8dfb32] to /home/pkgeval/.julia/compiled/v1.6/PairwiseListMatrices/jl_YMtjUH.
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.PipeEndpoint, internal_stdout::Base.PipeEndpoint)
    @ Base ./loading.jl:1348
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1294
  [4] _require(pkg::Base.PkgId)
    @ Base ./loading.jl:1009
  [5] require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:902
  [6] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:889
  [7] include(mod::Module, _path::String)
    @ Base ./Base.jl:389
  [8] include(x::String)
    @ MIToS ~/.julia/packages/MIToS/IWuWP/src/MIToS.jl:1
  [9] top-level scope
    @ ~/.julia/packages/MIToS/IWuWP/src/MIToS.jl:6
 [10] include
    @ ./Base.jl:389 [inlined]
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base ./loading.jl:1201
 [12] top-level scope
    @ none:1
 [13] eval
    @ ./boot.jl:360 [inlined]
 [14] eval(x::Expr)
    @ Base.MainInclude ./client.jl:446
 [15] top-level scope
    @ none:1
in expression starting at /home/pkgeval/.julia/packages/MIToS/IWuWP/src/MSA/MSA.jl:1
in expression starting at /home/pkgeval/.julia/packages/MIToS/IWuWP/src/MIToS.jl:1
ERROR: LoadError: Failed to precompile MIToS [51bafb47-8a16-5ded-8b04-24ef4eede0b5] to /home/pkgeval/.julia/compiled/v1.6/MIToS/jl_uUhHny.
Stacktrace:
 [1] error(s::String)
   @ Base ./error.jl:33
 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.PipeEndpoint, internal_stdout::Base.PipeEndpoint)
   @ Base ./loading.jl:1348
 [3] compilecache(pkg::Base.PkgId, path::String)
   @ Base ./loading.jl:1294
 [4] _require(pkg::Base.PkgId)
   @ Base ./loading.jl:1009
 [5] require(uuidkey::Base.PkgId)
   @ Base ./loading.jl:902
 [6] require(into::Module, mod::Symbol)
   @ Base ./loading.jl:889
 [7] include(fname::String)
   @ Base.MainInclude ./client.jl:444
 [8] top-level scope
   @ none:6
in expression starting at /home/pkgeval/.julia/packages/MIToS/IWuWP/test/runtests.jl:3

PkgEval failed: Package MIToS errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
    @ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1651
  [3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:334
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
    @ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:321
  [5] #test#62
    @ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:71 [inlined]
  [6] test
    @ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:70 [inlined]
  [7] #test#61
    @ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
  [8] test
    @ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
  [9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67
 [10] test(pkg::String)
    @ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67
 [11] top-level scope
    @ none:44
 [12] eval
    @ ./boot.jl:360 [inlined]
 [13] eval(x::Expr)
    @ Base.MainInclude ./client.jl:446
 [14] top-level scope
    @ none:1
 [15] eval(m::Module, e::Any)
    @ Core ./boot.jl:360
 [16] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:261
 [17] _start()
    @ Base ./client.jl:485


################################################################################
# PkgEval teardown: 2020-10-30T06:09:52.870
CPU usage: 46.16s (41.08s user, 5.22s kernel)

Network usage:
- eth0: 15.230 MiB received, 218.366 KiB sent

Raw statistics: {"blkio_stats":{"io_queue_recursive":[{"major":8,"value":0,"op":"Read","minor":0},{"major":8,"value":0,"op":"Write","minor":0},{"major":8,"value":0,"op":"Sync","minor":0},{"major":8,"value":0,"op":"Async","minor":0},{"major":8,"value":0,"op":"Total","minor":0}],"io_serviced_recursive":[{"major":8,"value":0,"op":"Read","minor":0},{"major":8,"value":8,"op":"Write","minor":0},{"major":8,"value":0,"op":"Sync","minor":0},{"major":8,"value":8,"op":"Async","minor":0},{"major":8,"value":8,"op":"Total","minor":0}],"io_time_recursive":[{"major":8,"value":5041914,"op":"","minor":0}],"sectors_recursive":[{"major":8,"value":64,"op":"","minor":0}],"io_service_bytes_recursive":[{"major":8,"value":0,"op":"Read","minor":0},{"major":8,"value":32768,"op":"Write","minor":0},{"major":8,"value":0,"op":"Sync","minor":0},{"major":8,"value":32768,"op":"Async","minor":0},{"major":8,"value":32768,"op":"Total","minor":0}],"io_wait_time_recursive":[{"major":8,"value":0,"op":"Read","minor":0},{"major":8,"value":28128631,"op":"Write","minor":0},{"major":8,"value":0,"op":"Sync","minor":0},{"major":8,"value":28128631,"op":"Async","minor":0},{"major":8,"value":28128631,"op":"Total","minor":0}],"io_merged_recursive":[{"major":8,"value":0,"op":"Read","minor":0},{"major":8,"value":0,"op":"Write","minor":0},{"major":8,"value":0,"op":"Sync","minor":0},{"major":8,"value":0,"op":"Async","minor":0},{"major":8,"value":0,"op":"Total","minor":0}],"io_service_time_recursive":[{"major":8,"value":0,"op":"Read","minor":0},{"major":8,"value":182310,"op":"Write","minor":0},{"major":8,"value":0,"op":"Sync","minor":0},{"major":8,"value":182310,"op":"Async","minor":0},{"major":8,"value":182310,"op":"Total","minor":0}]},"memory_stats":{"usage":348561408,"max_usage":983744512,"stats":{"hierarchical_memory_limit":9223372036854771712,"pgmajfault":7,"total_rss":236924928,"inactive_file":143360,"inactive_anon":103399424,"total_pgfault":1385971,"total_cache":103616512,"total_rss_huge":0,"total_active_anon":236826624,"total_pgmajfault":7,"pgpgin":1002136,"rss_huge":0,"mapped_file":159744,"total_inactive_file":143360,"dirty":0,"total_unevictable":0,"total_dirty":0,"writeback":0,"pgpgout":918996,"hierarchical_memsw_limit":0,"cache":103616512,"active_file":172032,"pgfault":1385971,"total_mapped_file":159744,"total_pgpgout":918996,"total_writeback":0,"rss":236924928,"unevictable":0,"total_inactive_anon":103399424,"total_pgpgin":1002136,"active_anon":236826624,"total_active_file":172032},"limit":540972998656},"name":"/MIToS-SFW178kP","networks":{"eth0":{"rx_bytes":15969505,"rx_packets":2450,"tx_packets":2123,"tx_bytes":223607,"tx_dropped":0,"rx_dropped":1,"tx_errors":0,"rx_errors":0}},"id":"45b4de48b0d21d5529203a630fdfc3472b143ca49be8e95bb068aec2f2d00efd","preread":"0001-01-01T00:00:00Z","storage_stats":{},"precpu_stats":{"throttling_data":{"throttled_periods":0,"throttled_time":0,"periods":0},"cpu_usage":{"usage_in_usermode":0,"usage_in_kernelmode":0,"total_usage":0}},"pids_stats":{"current":38},"num_procs":0,"cpu_stats":{"throttling_data":{"throttled_periods":0,"throttled_time":0,"periods":0},"system_cpu_usage":113634203610000000,"online_cpus":128,"cpu_usage":{"usage_in_usermode":41080000000,"usage_in_kernelmode":5220000000,"total_usage":46164100773,"percpu_usage":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,46164100773,0,0,0,0]}},"read":"2020-10-30T06:09:53.534093184Z"}